RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 RAD51AP2Q09MP3 1159 aa8.7□□□□□ -1.02
SCFD1-208ENST00000553278 ALG1LQ6GMV1 187 aa8.7□□□□□ -1.02
SCFD1-208ENST00000553278 METTL16Q86W50 562 aaKnown RBP8.7□□□□□ -1.02
SCFD1-208ENST00000553278 SLC9A9Q8IVB4 645 aa8.7□□□□□ -1.02
SCFD1-208ENST00000553278 TANGO6Q9C0B7 1094 aa8.7□□□□□ -1.02
SCFD1-208ENST00000553278 TGIF2Q9GZN2 237 aa8.7□□□□□ -1.02
SCFD1-208ENST00000553278 CCSER2Q9H7U1 834 aa8.7□□□□□ -1.02
SCFD1-208ENST00000553278 A6NJY4 79 aa8.69□□□□□ -1.02
SCFD1-208ENST00000553278 GPR182O15218 404 aa8.69□□□□□ -1.02
SCFD1-208ENST00000553278 BRD2P25440 801 aaKnown RBP8.69□□□□□ -1.02
SCFD1-208ENST00000553278 WNT7BP56706 349 aa8.69□□□□□ -1.02
SCFD1-208ENST00000553278 ARID5BQ14865 1188 aa8.69□□□□□ -1.02
SCFD1-208ENST00000553278 KCTD12Q96CX2 325 aaKnown RBP8.69□□□□□ -1.02
SCFD1-208ENST00000553278 MYO19Q96H55 970 aa8.69□□□□□ -1.02
SCFD1-208ENST00000553278 TMPRSS4Q9NRS4 437 aa8.69□□□□□ -1.02
SCFD1-208ENST00000553278 IGHA2P01877 340 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 ZNF76P36508 570 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 USP5P45974 858 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 SMTNP53814 917 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 FANCCQ00597 558 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 TRIM32Q13049 653 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 TBCELQ5QJ74 424 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 SLC43A3Q8NBI5 491 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 NIF3L1Q9GZT8 377 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 WWC3Q9ULE0 1092 aa8.68□□□□□ -1.02
SCFD1-208ENST00000553278 FSHRP23945 695 aa8.67□□□□□ -1.02
SCFD1-208ENST00000553278 MYT1Q01538 1121 aa8.67□□□□□ -1.02
SCFD1-208ENST00000553278 GNL2Q13823 731 aaKnown RBP8.67□□□□□ -1.02
SCFD1-208ENST00000553278 MTFR1Q15390 333 aa8.67□□□□□ -1.02
SCFD1-208ENST00000553278 ENOX2Q16206 610 aaKnown RBP8.67□□□□□ -1.02
SCFD1-208ENST00000553278 QTRT2Q9H974 415 aaKnown RBP8.67□□□□□ -1.02
SCFD1-208ENST00000553278 PNMA6FA0A0J9YX94 578 aa8.66□□□□□ -1.02
SCFD1-208ENST00000553278 ZNF784Q8NCA9 323 aaPredicted RBP8.66□□□□□ -1.02
SCFD1-208ENST00000553278 EHBP1Q8NDI1 1231 aa8.66□□□□□ -1.02
SCFD1-208ENST00000553278 NKX2-3Q8TAU0 364 aa8.66□□□□□ -1.02
SCFD1-208ENST00000553278 CDK15Q96Q40 435 aa8.66□□□□□ -1.02
SCFD1-208ENST00000553278 TINF2Q9BSI4 451 aa8.66□□□□□ -1.02
SCFD1-208ENST00000553278 CAPN10Q9HC96 672 aa8.66□□□□□ -1.02
SCFD1-208ENST00000553278 NLRP2Q9NX02 1062 aa8.66□□□□□ -1.02
SCFD1-208ENST00000553278 MZF1P28698 734 aaPredicted RBP8.65□□□□□ -1.02
SCFD1-208ENST00000553278 DPH6Q7L8W6 267 aa8.65□□□□□ -1.02
SCFD1-208ENST00000553278 GJD3Q8N144 294 aa8.65□□□□□ -1.02
SCFD1-208ENST00000553278 RNF19AQ9NV58 838 aa8.65□□□□□ -1.02
SCFD1-208ENST00000553278 LRFN2Q9ULH4 789 aa8.65□□□□□ -1.02
SCFD1-208ENST00000553278 POLIQ9UNA4 740 aa8.65□□□□□ -1.02
SCFD1-208ENST00000553278 CADPSQ9ULU8 1353 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 CDK2AP1O14519 115 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 ZBTB39O15060 712 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 PCSK2P16519 638 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 ATP2B1P20020 1258 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 GNA15P30679 374 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 ATCAYQ86WG3 371 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 NBPF15Q8N660 670 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 FBF1Q8TES7 1133 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 FRMD6Q96NE9 622 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 IRX2Q9BZI1 471 aaPredicted RBP8.64□□□□□ -1.03
SCFD1-208ENST00000553278 PRKAG2Q9UGJ0 569 aa8.64□□□□□ -1.03
SCFD1-208ENST00000553278 SERTM1A2A2V5 107 aa8.63□□□□□ -1.03
SCFD1-208ENST00000553278 PPM1GO15355 546 aaPredicted RBP8.63□□□□□ -1.03
SCFD1-208ENST00000553278 NCLP19338 710 aaKnown RBP8.63□□□□□ -1.03
SCFD1-208ENST00000553278 SKOR1P84550 965 aa8.63□□□□□ -1.03
SCFD1-208ENST00000553278 DNM1Q05193 864 aaKnown RBP8.63□□□□□ -1.03
SCFD1-208ENST00000553278 CCDC116Q8IYX3 515 aa8.63□□□□□ -1.03
SCFD1-208ENST00000553278 XAGE2Q96GT9 111 aa8.63□□□□□ -1.03
SCFD1-208ENST00000553278 NGLY1Q96IV0 654 aa8.63□□□□□ -1.03
SCFD1-208ENST00000553278 SETDB2Q96T68 719 aa8.63□□□□□ -1.03
SCFD1-208ENST00000553278 LILRA1O75019 489 aa8.62□□□□□ -1.03
SCFD1-208ENST00000553278 RGS20O76081 388 aa8.62□□□□□ -1.03
SCFD1-208ENST00000553278 NEFLP07196 543 aa8.62□□□□□ -1.03
SCFD1-208ENST00000553278 PTPN5P54829 565 aa8.62□□□□□ -1.03
SCFD1-208ENST00000553278 TLR1Q15399 786 aa8.62□□□□□ -1.03
SCFD1-208ENST00000553278 C11orf91Q3C1V1 193 aa8.62□□□□□ -1.03
SCFD1-208ENST00000553278 EDEM1Q92611 657 aa8.62□□□□□ -1.03
SCFD1-208ENST00000553278 RAB6BQ9NRW1 208 aa8.62□□□□□ -1.03
SCFD1-208ENST00000553278 CUEDC1Q9NWM3 386 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-208ENST00000553278 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-208ENST00000553278 PPEF1O14829 653 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-208ENST00000553278 PDGFAP04085 211 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 GRM5P41594 1212 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 ZAP70P43403 619 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 HIRAP54198 1017 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-208ENST00000553278 RTN1Q16799 776 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 PPP1R26Q5T8A7 1209 aaPredicted RBP8.61□□□□□ -1.03
SCFD1-208ENST00000553278 POTEAQ6S8J7 498 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 MPNDQ8N594 471 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 TTC16Q8NEE8 873 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 ARMC5Q96C12 935 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 CRELD1Q96HD1 420 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 CSRNP1Q96S65 589 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 DNAJC2Q99543 621 aaKnown RBP8.61□□□□□ -1.03
SCFD1-208ENST00000553278 ACBD3Q9H3P7 528 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 ARHGEF10LQ9HCE6 1279 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 PGPEP1Q9NXJ5 209 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 ZNF232Q9UNY5 417 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 AK5Q9Y6K8 562 aa8.61□□□□□ -1.03
SCFD1-208ENST00000553278 TEAD4Q15561 434 aa8.6□□□□□ -1.03
SCFD1-208ENST00000553278 NOP9Q86U38 636 aaKnown RBP8.6□□□□□ -1.03
SCFD1-208ENST00000553278 EMILIN1Q9Y6C2 1016 aa8.6□□□□□ -1.03
SCFD1-208ENST00000553278 EML1O00423 815 aa8.59□□□□□ -1.03
SCFD1-208ENST00000553278 ADH1CP00326 375 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms