RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TIMELESSQ9UNS1 1208 aa17.63■□□□□ 0.41
USP28-212ENST00000544750 ANKRD31Q8N7Z5 1873 aa17.63■□□□□ 0.41
USP28-212ENST00000544750 RASSF7Q02833 373 aa17.62■□□□□ 0.41
USP28-212ENST00000544750 USPL1Q5W0Q7 1092 aa17.62■□□□□ 0.41
USP28-212ENST00000544750 SMC1BQ8NDV3 1235 aa17.62■□□□□ 0.41
USP28-212ENST00000544750 PCGF6Q9BYE7 350 aa17.62■□□□□ 0.41
USP28-212ENST00000544750 PANK3Q9H999 370 aa17.62■□□□□ 0.41
USP28-212ENST00000544750 FER1L6Q2WGJ9 1857 aa17.61■□□□□ 0.41
USP28-212ENST00000544750 NFIXQ14938 502 aa17.61■□□□□ 0.41
USP28-212ENST00000544750 SULT6B1Q6IMI4 303 aa17.61■□□□□ 0.41
USP28-212ENST00000544750 ZPR1O75312 459 aa17.6■□□□□ 0.41
USP28-212ENST00000544750 CYP19A1P11511 503 aaPredicted RBP17.6■□□□□ 0.41
USP28-212ENST00000544750 IL13P35225 146 aa17.6■□□□□ 0.41
USP28-212ENST00000544750 POLR3GLQ9BT43 218 aa17.6■□□□□ 0.41
USP28-212ENST00000544750 BCL2L12Q9HB09 334 aa17.6■□□□□ 0.41
USP28-212ENST00000544750 NARFQ9UHQ1 456 aa17.6■□□□□ 0.41
USP28-212ENST00000544750 COL15A1P39059 1388 aa17.59■□□□□ 0.41
USP28-212ENST00000544750 GLTPD2A6NH11 291 aa17.59■□□□□ 0.41
USP28-212ENST00000544750 LMNB1P20700 586 aa17.59■□□□□ 0.41
USP28-212ENST00000544750 SLC52A2Q9HAB3 445 aa17.59■□□□□ 0.41
USP28-212ENST00000544750 LGR6Q9HBX8 967 aa17.59■□□□□ 0.41
USP28-212ENST00000544750 AKAP4Q5JQC9 854 aa17.58■□□□□ 0.4
USP28-212ENST00000544750 ZBTB1Q9Y2K1 713 aa17.58■□□□□ 0.4
USP28-212ENST00000544750 VEGFAP15692 232 aaPredicted RBP17.57■□□□□ 0.4
USP28-212ENST00000544750 COL11A2P13942 1736 aaPredicted RBP17.57■□□□□ 0.4
USP28-212ENST00000544750 CARMIL3Q8ND23 1372 aa17.56■□□□□ 0.4
USP28-212ENST00000544750 POTECB2RU33 542 aa17.56■□□□□ 0.4
USP28-212ENST00000544750 NFKBIEO00221 500 aa17.56■□□□□ 0.4
USP28-212ENST00000544750 SERPINB2P05120 415 aa17.56■□□□□ 0.4
USP28-212ENST00000544750 SLC39A6Q13433 755 aa17.56■□□□□ 0.4
USP28-212ENST00000544750 MORC1Q86VD1 984 aa17.56■□□□□ 0.4
USP28-212ENST00000544750 RNMTO43148 476 aaKnown RBP17.55■□□□□ 0.4
USP28-212ENST00000544750 TNS4Q8IZW8 715 aa17.55■□□□□ 0.4
USP28-212ENST00000544750 TTLL6Q8N841 843 aa17.55■□□□□ 0.4
USP28-212ENST00000544750 SCN7AQ01118 1682 aa17.55■□□□□ 0.4
USP28-212ENST00000544750 CACNA1SQ13698 1873 aa17.54■□□□□ 0.4
USP28-212ENST00000544750 SIPA1L3O60292 1781 aaPredicted RBP17.54■□□□□ 0.4
USP28-212ENST00000544750 VSIG10Q8N0Z9 540 aa17.54■□□□□ 0.4
USP28-212ENST00000544750 ARFGEF2Q9Y6D5 1785 aa17.53■□□□□ 0.4
USP28-212ENST00000544750 HSPA1AP0DMV8 641 aaKnown RBP17.52■□□□□ 0.4
USP28-212ENST00000544750 HSPA1BP0DMV9 641 aaKnown RBP17.52■□□□□ 0.4
USP28-212ENST00000544750 HSPA5P11021 654 aaKnown RBP17.52■□□□□ 0.4
USP28-212ENST00000544750 C2CD5Q86YS7 1000 aa17.52■□□□□ 0.4
USP28-212ENST00000544750 SLX4Q8IY92 1834 aa17.51■□□□□ 0.39
USP28-212ENST00000544750 CAPN15O75808 1086 aa17.51■□□□□ 0.39
USP28-212ENST00000544750 EIF5P55010 431 aaKnown RBP17.51■□□□□ 0.39
USP28-212ENST00000544750 EIF4G2P78344 907 aaKnown RBP eCLIP17.51■□□□□ 0.39
USP28-212ENST00000544750 H0YIN7 160 aa17.5■□□□□ 0.39
USP28-212ENST00000544750 CLSPNQ9HAW4 1339 aa17.49■□□□□ 0.39
USP28-212ENST00000544750 MTHFSDQ2M296 383 aaKnown RBP17.49■□□□□ 0.39
USP28-212ENST00000544750 AMER1Q5JTC6 1135 aaPredicted RBP17.49■□□□□ 0.39
USP28-212ENST00000544750 BCORQ6W2J9 1755 aa17.48■□□□□ 0.39
USP28-212ENST00000544750 HMOX1P09601 288 aa17.48■□□□□ 0.39
USP28-212ENST00000544750 CANXP27824 592 aaKnown RBP17.48■□□□□ 0.39
USP28-212ENST00000544750 TBC1D9BQ66K14 1250 aa17.47■□□□□ 0.39
USP28-212ENST00000544750 KNSTRNQ9Y448 316 aa17.47■□□□□ 0.39
USP28-212ENST00000544750 SCN4AP35499 1836 aa17.47■□□□□ 0.39
USP28-212ENST00000544750 LTBP3Q9NS15 1303 aa17.47■□□□□ 0.39
USP28-212ENST00000544750 DPY19L2Q6NUT2 758 aa17.46■□□□□ 0.39
USP28-212ENST00000544750 BICDL1Q6ZP65 573 aa17.46■□□□□ 0.39
USP28-212ENST00000544750 BRIP1Q9BX63 1249 aa17.46■□□□□ 0.39
USP28-212ENST00000544750 PDZRN3Q9UPQ7 1066 aa17.46■□□□□ 0.39
USP28-212ENST00000544750 PRR5LQ6MZQ0 368 aa17.45■□□□□ 0.38
USP28-212ENST00000544750 A0A087WZG4 1122 aa17.44■□□□□ 0.38
USP28-212ENST00000544750 C21orf2O43822 256 aa17.44■□□□□ 0.38
USP28-212ENST00000544750 PDE6BP35913 854 aa17.44■□□□□ 0.38
USP28-212ENST00000544750 ZNF496Q96IT1 587 aaPredicted RBP17.44■□□□□ 0.38
USP28-212ENST00000544750 HEG1Q9ULI3 1381 aa17.43■□□□□ 0.38
USP28-212ENST00000544750 STARD3NLO95772 234 aa17.43■□□□□ 0.38
USP28-212ENST00000544750 POTEIP0CG38 1075 aa17.43■□□□□ 0.38
USP28-212ENST00000544750 POTEJP0CG39 1038 aa17.43■□□□□ 0.38
USP28-212ENST00000544750 ERFEQ4G0M1 354 aa17.43■□□□□ 0.38
USP28-212ENST00000544750 ZNF622Q969S3 477 aaKnown RBP eCLIP17.43■□□□□ 0.38
USP28-212ENST00000544750 CREBZFQ9NS37 354 aa17.43■□□□□ 0.38
USP28-212ENST00000544750 CHADLQ6NUI6 762 aa17.42■□□□□ 0.38
USP28-212ENST00000544750 CCDC24Q8N4L8 307 aa17.42■□□□□ 0.38
USP28-212ENST00000544750 COL3A1P02461 1466 aaPredicted RBP17.42■□□□□ 0.38
USP28-212ENST00000544750 IL6STP40189 918 aaPredicted RBP17.41■□□□□ 0.38
USP28-212ENST00000544750 ZNF790Q6PG37 636 aa17.41■□□□□ 0.38
USP28-212ENST00000544750 TTC5Q8N0Z6 440 aa17.41■□□□□ 0.38
USP28-212ENST00000544750 IL17REQ8NFR9 667 aa17.41■□□□□ 0.38
USP28-212ENST00000544750 ZNF219Q9P2Y4 722 aaPredicted RBP17.41■□□□□ 0.38
USP28-212ENST00000544750 TBC1D2BQ9UPU7 963 aa17.41■□□□□ 0.38
USP28-212ENST00000544750 ADAMTSL1Q8N6G6 1762 aa17.4■□□□□ 0.38
USP28-212ENST00000544750 PER1O15534 1290 aaPredicted RBP17.4■□□□□ 0.38
USP28-212ENST00000544750 DIAPH1O60610 1272 aaKnown RBP17.4■□□□□ 0.38
USP28-212ENST00000544750 DDNO94850 711 aaPredicted RBP17.4■□□□□ 0.38
USP28-212ENST00000544750 TEX13AQ9BXU3 409 aaPredicted RBP17.4■□□□□ 0.38
USP28-212ENST00000544750 TAOK3Q9H2K8 898 aa17.4■□□□□ 0.38
USP28-212ENST00000544750 PASKQ96RG2 1323 aa17.4■□□□□ 0.38
USP28-212ENST00000544750 CAMTA2O94983 1202 aa17.39■□□□□ 0.37
USP28-212ENST00000544750 SRGNP10124 158 aa17.39■□□□□ 0.37
USP28-212ENST00000544750 STYK1Q6J9G0 422 aa17.39■□□□□ 0.37
USP28-212ENST00000544750 CNKSR1Q969H4 720 aa17.38■□□□□ 0.37
USP28-212ENST00000544750 MKRN1Q9UHC7 482 aaKnown RBP17.38■□□□□ 0.37
USP28-212ENST00000544750 CNTNAP1P78357 1384 aa17.38■□□□□ 0.37
USP28-212ENST00000544750 A1BGP04217 495 aa17.37■□□□□ 0.37
USP28-212ENST00000544750 PRPF40BQ6NWY9 871 aaKnown RBP17.37■□□□□ 0.37
USP28-212ENST00000544750 CNBD1Q8NA66 436 aa17.37■□□□□ 0.37
USP28-212ENST00000544750 C7orf43Q8WVR3 580 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms