RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 CNTNAP1P78357 1384 aa16.72■□□□□ 0.27
YBX3-207ENST00000539204 MTHFSP49914 203 aa16.71■□□□□ 0.27
YBX3-207ENST00000539204 C2CD5Q86YS7 1000 aa16.71■□□□□ 0.27
YBX3-207ENST00000539204 ABHD8Q96I13 439 aa16.71■□□□□ 0.27
YBX3-207ENST00000539204 CARD14Q9BXL6 1004 aa16.71■□□□□ 0.27
YBX3-207ENST00000539204 SERPINB2P05120 415 aa16.7■□□□□ 0.26
YBX3-207ENST00000539204 VEGFBP49765 207 aa16.7■□□□□ 0.26
YBX3-207ENST00000539204 NFIXQ14938 502 aa16.7■□□□□ 0.26
YBX3-207ENST00000539204 CDCA8Q53HL2 280 aa16.7■□□□□ 0.26
YBX3-207ENST00000539204 WBP1LQ9NX94 342 aa16.7■□□□□ 0.26
YBX3-207ENST00000539204 POLKQ9UBT6 870 aa16.7■□□□□ 0.26
YBX3-207ENST00000539204 COL5A3P25940 1745 aaPredicted RBP16.7■□□□□ 0.26
YBX3-207ENST00000539204 POTEIP0CG38 1075 aa16.69■□□□□ 0.26
YBX3-207ENST00000539204 POTEJP0CG39 1038 aa16.69■□□□□ 0.26
YBX3-207ENST00000539204 EIF4A2Q14240 407 aaKnown RBP16.69■□□□□ 0.26
YBX3-207ENST00000539204 AMOTQ4VCS5 1084 aa16.69■□□□□ 0.26
YBX3-207ENST00000539204 MLLT1Q03111 559 aaPredicted RBP16.68■□□□□ 0.26
YBX3-207ENST00000539204 ZNF530Q6P9A1 599 aaPredicted RBP16.68■□□□□ 0.26
YBX3-207ENST00000539204 NARFQ9UHQ1 456 aa16.68■□□□□ 0.26
YBX3-207ENST00000539204 TMEM88BA6NKF7 163 aa16.67■□□□□ 0.26
YBX3-207ENST00000539204 DDNO94850 711 aaPredicted RBP16.67■□□□□ 0.26
YBX3-207ENST00000539204 PASKQ96RG2 1323 aa16.67■□□□□ 0.26
YBX3-207ENST00000539204 C21orf2O43822 256 aa16.66■□□□□ 0.26
YBX3-207ENST00000539204 C1orf141Q5JVX7 400 aa16.66■□□□□ 0.26
YBX3-207ENST00000539204 ZNF622Q969S3 477 aaKnown RBP eCLIP16.66■□□□□ 0.262e-15■□□□□ 9.4
YBX3-207ENST00000539204 ZNF219Q9P2Y4 722 aaPredicted RBP16.66■□□□□ 0.26
YBX3-207ENST00000539204 IQCA1LA6NCM1 817 aa16.65■□□□□ 0.26
YBX3-207ENST00000539204 LDHDQ86WU2 507 aa16.65■□□□□ 0.26
YBX3-207ENST00000539204 DNAJC10Q8IXB1 793 aa16.65■□□□□ 0.26
YBX3-207ENST00000539204 KIF20BQ96Q89 1820 aa16.65■□□□□ 0.26
YBX3-207ENST00000539204 CCDC88AQ3V6T2 1871 aa16.65■□□□□ 0.26
YBX3-207ENST00000539204 MAP2K1Q02750 393 aaPredicted RBP16.64■□□□□ 0.25
YBX3-207ENST00000539204 PDZRN3Q9UPQ7 1066 aa16.64■□□□□ 0.25
YBX3-207ENST00000539204 SOS1Q07889 1333 aaPredicted RBP16.64■□□□□ 0.25
YBX3-207ENST00000539204 CCDC85CA6NKD9 419 aa16.63■□□□□ 0.25
YBX3-207ENST00000539204 PDE6BP35913 854 aa16.63■□□□□ 0.25
YBX3-207ENST00000539204 RGS19P49795 217 aa16.63■□□□□ 0.25
YBX3-207ENST00000539204 DEFB115Q30KQ5 88 aa16.63■□□□□ 0.25
YBX3-207ENST00000539204 ITGBL1O95965 494 aaPredicted RBP16.62■□□□□ 0.25
YBX3-207ENST00000539204 HSPA8P11142 646 aaKnown RBP16.62■□□□□ 0.25
YBX3-207ENST00000539204 CYP19A1P11511 503 aaPredicted RBP16.62■□□□□ 0.25
YBX3-207ENST00000539204 TNNT2P45379 298 aaPredicted RBP16.62■□□□□ 0.25
YBX3-207ENST00000539204 TAOK3Q9H2K8 898 aa16.62■□□□□ 0.25
YBX3-207ENST00000539204 BCL2L12Q9HB09 334 aa16.62■□□□□ 0.25
YBX3-207ENST00000539204 TIAM2Q8IVF5 1701 aa16.62■□□□□ 0.25
YBX3-207ENST00000539204 BICDL1Q6ZP65 573 aa16.61■□□□□ 0.25
YBX3-207ENST00000539204 TAF1DQ9H5J8 278 aaPredicted RBP16.61■□□□□ 0.25
YBX3-207ENST00000539204 CLEC11AQ9Y240 323 aa16.61■□□□□ 0.25
YBX3-207ENST00000539204 BRIP1Q9BX63 1249 aa16.6■□□□□ 0.25
YBX3-207ENST00000539204 LTBP3Q9NS15 1303 aa16.6■□□□□ 0.25
YBX3-207ENST00000539204 RASSF10A6NK89 507 aa16.59■□□□□ 0.25
YBX3-207ENST00000539204 EAPPQ56P03 285 aaPredicted RBP16.59■□□□□ 0.25
YBX3-207ENST00000539204 AFDNP55196 1824 aaKnown RBP16.59■□□□□ 0.25
YBX3-207ENST00000539204 L3MBTL3Q96JM7 780 aaPredicted RBP16.58■□□□□ 0.24
YBX3-207ENST00000539204 ZBTB1Q9Y2K1 713 aa16.58■□□□□ 0.24
YBX3-207ENST00000539204 WDR33Q9C0J8 1336 aaKnown RBP16.58■□□□□ 0.24
YBX3-207ENST00000539204 COL15A1P39059 1388 aa16.58■□□□□ 0.24
YBX3-207ENST00000539204 CARMIL3Q8ND23 1372 aa16.57■□□□□ 0.24
YBX3-207ENST00000539204 SOGA3Q5TF21 947 aa16.57■□□□□ 0.24
YBX3-207ENST00000539204 CNKSR1Q969H4 720 aa16.57■□□□□ 0.24
YBX3-207ENST00000539204 BEGAINQ9BUH8 593 aa16.57■□□□□ 0.24
YBX3-207ENST00000539204 NRXN2Q9P2S2 1712 aa16.56■□□□□ 0.24
YBX3-207ENST00000539204 ANKRD26Q9UPS8 1709 aa16.56■□□□□ 0.24
YBX3-207ENST00000539204 ADAMTS7Q9UKP4 1686 aa16.56■□□□□ 0.24
YBX3-207ENST00000539204 A0A087WZG4 1122 aa16.56■□□□□ 0.24
YBX3-207ENST00000539204 CANXP27824 592 aaKnown RBP16.56■□□□□ 0.24
YBX3-207ENST00000539204 CNTROBQ8N137 903 aa16.56■□□□□ 0.24
YBX3-207ENST00000539204 SLC52A2Q9HAB3 445 aa16.56■□□□□ 0.24
YBX3-207ENST00000539204 HACL1Q9UJ83 578 aa16.56■□□□□ 0.24
YBX3-207ENST00000539204 ABT1Q9ULW3 272 aaKnown RBP16.56■□□□□ 0.24
YBX3-207ENST00000539204 DLEC1Q9Y238 1755 aa16.56■□□□□ 0.24
YBX3-207ENST00000539204 DICER1Q9UPY3 1922 aaKnown RBP16.55■□□□□ 0.24
YBX3-207ENST00000539204 SLC39A6Q13433 755 aa16.55■□□□□ 0.24
YBX3-207ENST00000539204 PNMA8AQ86V59 439 aaPredicted RBP16.55■□□□□ 0.24
YBX3-207ENST00000539204 AEBP1Q8IUX7 1158 aa16.55■□□□□ 0.24
YBX3-207ENST00000539204 CCDC24Q8N4L8 307 aa16.55■□□□□ 0.24
YBX3-207ENST00000539204 TJP1Q07157 1748 aa16.55■□□□□ 0.24
YBX3-207ENST00000539204 TBC1D9BQ66K14 1250 aa16.54■□□□□ 0.24
YBX3-207ENST00000539204 PRR5LQ6MZQ0 368 aa16.54■□□□□ 0.24
YBX3-207ENST00000539204 NPHP1O15259 732 aa16.53■□□□□ 0.24
YBX3-207ENST00000539204 EPHX2P34913 555 aa16.53■□□□□ 0.24
YBX3-207ENST00000539204 AKAP4Q5JQC9 854 aa16.53■□□□□ 0.24
YBX3-207ENST00000539204 MAP1SQ66K74 1059 aaPredicted RBP16.53■□□□□ 0.24
YBX3-207ENST00000539204 SULT6B1Q6IMI4 303 aa16.53■□□□□ 0.24
YBX3-207ENST00000539204 STYK1Q6J9G0 422 aa16.53■□□□□ 0.24
YBX3-207ENST00000539204 VSIG10Q8N0Z9 540 aa16.53■□□□□ 0.24
YBX3-207ENST00000539204 CFAP44Q96MT7 982 aa16.53■□□□□ 0.24
YBX3-207ENST00000539204 LGR6Q9HBX8 967 aa16.53■□□□□ 0.24
YBX3-207ENST00000539204 FER1L6Q2WGJ9 1857 aa16.52■□□□□ 0.24
YBX3-207ENST00000539204 VIRMAQ69YN4 1812 aaKnown RBP16.52■□□□□ 0.24
YBX3-207ENST00000539204 STARD3NLO95772 234 aa16.52■□□□□ 0.24
YBX3-207ENST00000539204 EIF5P55010 431 aaKnown RBP16.52■□□□□ 0.24
YBX3-207ENST00000539204 PRPF40BQ6NWY9 871 aaKnown RBP16.52■□□□□ 0.24
YBX3-207ENST00000539204 SRGNP10124 158 aa16.51■□□□□ 0.23
YBX3-207ENST00000539204 MASTLQ96GX5 879 aa16.51■□□□□ 0.23
YBX3-207ENST00000539204 SCN4AP35499 1836 aa16.51■□□□□ 0.23
YBX3-207ENST00000539204 ECE1P42892 770 aa16.5■□□□□ 0.23
YBX3-207ENST00000539204 PAXIP1Q6ZW49 1069 aaPredicted RBP16.5■□□□□ 0.23
YBX3-207ENST00000539204 GPR101Q96P66 508 aaPredicted RBP16.5■□□□□ 0.23
YBX3-207ENST00000539204 SETDB2Q96T68 719 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms