RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, human

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGB1-208	ENST00000490788	GAS2L1	Q99501	681 aa	Predicted RBP	4.26	□□□□□ -1.73
HMGB1-208	ENST00000490788	NIFK	Q9BYG3	293 aa	Known RBP	4.26	□□□□□ -1.73
HMGB1-208	ENST00000490788	GRIP2	Q9C0E4	1043 aa		4.26	□□□□□ -1.73
HMGB1-208	ENST00000490788	CDC14C	A4D256	554 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788		A6NJY4	79 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788		H7C1W4	665 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	PHKA2	P46019	1235 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	SEC13	P55735	322 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	CLDN10	P78369	228 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	NBPF1	Q3BBV0	1214 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	WDR44	Q5JSH3	913 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	WHAMM	Q8TF30	809 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	AIDA	Q96BJ3	306 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	HINFP	Q9BQA5	517 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	ZNF358	Q9NW07	568 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788	CABP1	Q9NZU7	370 aa		4.25	□□□□□ -1.73
HMGB1-208	ENST00000490788		A0A1B0GTH6	734 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	FAM196B	A6NMK8	535 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	TMEM229A	B2RXF0	380 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	SPATA31C2	B4DYI2	1134 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L15	C9J2P7	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L10	C9JJH3	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L13	C9JLJ4	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L12	C9JPN9	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L11	C9JVI0	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L21	D6R901	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L18	D6R9N7	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L22	D6RA61	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L17	D6RBQ6	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L19	D6RCP7	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L20	D6RJB6	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	CDK2AP1	O14519	115 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	TAT	P17735	454 aa	Predicted RBP	4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	PLA2G4A	P47712	749 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	SRSF11	Q05519	484 aa	Known RBP	4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	USP17L24	Q0WX57	530 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	CDCA8	Q53HL2	280 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	CFAP70	Q5T0N1	1121 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	PPARGC1B	Q86YN6	1023 aa	Known RBP	4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	SLC4A9	Q96Q91	983 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	KRTAP4-11	Q9BYQ6	195 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	KRTAP4-5	Q9BYR2	181 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	ENAM	Q9NRM1	1142 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	ZNF232	Q9UNY5	417 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	DYRK1B	Q9Y463	629 aa		4.24	□□□□□ -1.73
HMGB1-208	ENST00000490788	SFI1	A8K8P3	1242 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	ADAMTS2	O95450	1211 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	F11	P03951	625 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	MAP3K10	Q02779	954 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	LAMC2	Q13753	1193 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	C4orf17	Q53FE4	359 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	KANK4	Q5T7N3	995 aa	Predicted RBP	4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	ANKMY2	Q8IV38	441 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	TNS4	Q8IZW8	715 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	SIX5	Q8N196	739 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	CCDC82	Q8N4S0	544 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	FAM200A	Q8TCP9	573 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	GMCL1	Q96IK5	515 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	TRERF1	Q96PN7	1200 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	FHDC1	Q9C0D6	1143 aa	Predicted RBP	4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	GPAM	Q9HCL2	828 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	NEUROD4	Q9HD90	331 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	KIAA1024	Q9UPX6	916 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	HRH3	Q9Y5N1	445 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	GJA3	Q9Y6H8	435 aa		4.23	□□□□□ -1.73
HMGB1-208	ENST00000490788	ACIN1	Q9UKV3	1341 aa	Known RBP	4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	SENP3-EIF4A1	A0A087X0R7	540 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788		M0R2N6	131 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	SUPT5H	O00267	1087 aa	Known RBP	4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	ZBTB7B	O15156	539 aa	Predicted RBP	4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	DPYD	Q12882	1025 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	PTK7	Q13308	1070 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	MTFR1	Q15390	333 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	CRTC2	Q53ET0	693 aa	Predicted RBP	4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	ARSJ	Q5FYB0	599 aa	Predicted RBP	4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	EFHC2	Q5JST6	749 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	BICDL1	Q6ZP65	573 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	SLC9A9	Q8IVB4	645 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	TSEN2	Q8NCE0	465 aa	Known RBP	4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	VTI1A	Q96AJ9	217 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	PBXIP1	Q96AQ6	731 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	ARID3A	Q99856	593 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	SCHIP1	Q9P0W5	487 aa	Predicted RBP	4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	TIMELESS	Q9UNS1	1208 aa		4.22	□□□□□ -1.73
HMGB1-208	ENST00000490788	ARID1B	Q8NFD5	2236 aa	Predicted RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	SERTM1	A2A2V5	107 aa		4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	PHF20L1	A8MW92	1017 aa		4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	PPP1R12B	O60237	982 aa	Predicted RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	ITGB2	P05107	769 aa		4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	CELA2B	P08218	269 aa	Predicted RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	PSMA6	P60900	246 aa	Known RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	LYPD4	Q6UWN0	246 aa		4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	TRIM22	Q8IYM9	498 aa		4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	BEND7	Q8N7W2	519 aa	Predicted RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	C1orf216	Q8TAB5	229 aa		4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	CHMP7	Q8WUX9	453 aa	Predicted RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	NUCKS1	Q9H1E3	243 aa	Known RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	NOVA2	Q9UNW9	492 aa	Known RBP	4.21	□□□□□ -1.74
HMGB1-208	ENST00000490788	ABCC9	O60706	1549 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 43 ms