RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 LGR6Q9HBX8 967 aa18.52■□□□□ 0.56
DDX56-201ENST00000258772 NAP1L5Q96NT1 182 aaPredicted RBP18.52■□□□□ 0.56
DDX56-201ENST00000258772 PHF8Q9UPP1 1060 aa18.52■□□□□ 0.56
DDX56-201ENST00000258772 FER1L4A9Z1Z3 1794 aa18.52■□□□□ 0.55
DDX56-201ENST00000258772 HOXB7P09629 217 aa18.51■□□□□ 0.55
DDX56-201ENST00000258772 PRIM1P49642 420 aaKnown RBP18.51■□□□□ 0.55
DDX56-201ENST00000258772 NBPF6Q5VWK0 638 aa18.51■□□□□ 0.55
DDX56-201ENST00000258772 NBPF4Q96M43 638 aa18.51■□□□□ 0.55
DDX56-201ENST00000258772 RBM27Q9P2N5 1060 aaKnown RBP18.51■□□□□ 0.55
DDX56-201ENST00000258772 SRGAP3O43295 1099 aa18.51■□□□□ 0.55
DDX56-201ENST00000258772 NBPF7P0C2Y1 421 aaPredicted RBP18.51■□□□□ 0.55
DDX56-201ENST00000258772 NOL8Q76FK4 1167 aaKnown RBP18.51■□□□□ 0.55
DDX56-201ENST00000258772 PI4K2BQ8TCG2 481 aa18.51■□□□□ 0.55
DDX56-201ENST00000258772 UPF3BQ9BZI7 483 aaKnown RBP18.51■□□□□ 0.55
DDX56-201ENST00000258772 RBSNQ9H1K0 784 aa18.51■□□□□ 0.55
DDX56-201ENST00000258772 HSPA4P34932 840 aa18.5■□□□□ 0.55
DDX56-201ENST00000258772 BEND3Q5T5X7 828 aa18.5■□□□□ 0.55
DDX56-201ENST00000258772 CHPF2Q9P2E5 772 aa18.5■□□□□ 0.55
DDX56-201ENST00000258772 DNAAF4Q8WXU2 420 aa18.5■□□□□ 0.55
DDX56-201ENST00000258772 KIF1BPQ96EK5 621 aa18.5■□□□□ 0.55
DDX56-201ENST00000258772 CHMP4AQ9BY43 222 aa18.5■□□□□ 0.55
DDX56-201ENST00000258772 TMEM63CQ9P1W3 806 aa18.5■□□□□ 0.55
DDX56-201ENST00000258772 NSFL1CQ9UNZ2 370 aaKnown RBP18.5■□□□□ 0.55
DDX56-201ENST00000258772 PI4KAP2A4QPH2 592 aa18.49■□□□□ 0.55
DDX56-201ENST00000258772 PI4KAP1Q8N8J0 262 aa18.49■□□□□ 0.55
DDX56-201ENST00000258772 MED1Q15648 1581 aaPredicted RBP18.49■□□□□ 0.55
DDX56-201ENST00000258772 MAP4K4O95819 1239 aaPredicted RBP18.49■□□□□ 0.55
DDX56-201ENST00000258772 KDM3BQ7LBC6 1761 aa18.48■□□□□ 0.55
DDX56-201ENST00000258772 KCNQ3O43525 872 aa18.48■□□□□ 0.55
DDX56-201ENST00000258772 MBD3O95983 291 aa18.48■□□□□ 0.55
DDX56-201ENST00000258772 SGSM2O43147 1006 aa18.47■□□□□ 0.55
DDX56-201ENST00000258772 LRSAM1Q6UWE0 723 aa18.47■□□□□ 0.55
DDX56-201ENST00000258772 NFAT5O94916 1531 aa18.47■□□□□ 0.55
DDX56-201ENST00000258772 ZSCAN30Q86W11 494 aa18.46■□□□□ 0.55
DDX56-201ENST00000258772 TEFQ10587 303 aa18.46■□□□□ 0.55
DDX56-201ENST00000258772 RAD50Q92878 1312 aa18.46■□□□□ 0.55
DDX56-201ENST00000258772 SYCE3A1L190 88 aa18.45■□□□□ 0.54
DDX56-201ENST00000258772 BTBD11A6QL63 1104 aa18.45■□□□□ 0.54
DDX56-201ENST00000258772 ANXA1P04083 346 aa18.45■□□□□ 0.54
DDX56-201ENST00000258772 HSP90AB4PQ58FF6 505 aa18.45■□□□□ 0.54
DDX56-201ENST00000258772 AKAP4Q5JQC9 854 aa18.45■□□□□ 0.54
DDX56-201ENST00000258772 CNTROBQ8N137 903 aa18.45■□□□□ 0.54
DDX56-201ENST00000258772 RGPD2P0DJD1 1756 aa18.45■□□□□ 0.54
DDX56-201ENST00000258772 PDLIM2Q96JY6 352 aa18.45■□□□□ 0.54
DDX56-201ENST00000258772 PLEKHG5O94827 1062 aa18.44■□□□□ 0.54
DDX56-201ENST00000258772 ZNF530Q6P9A1 599 aaPredicted RBP18.44■□□□□ 0.54
DDX56-201ENST00000258772 KCNH5Q8NCM2 988 aa18.44■□□□□ 0.54
DDX56-201ENST00000258772 LSG1Q9H089 658 aaKnown RBP18.44■□□□□ 0.54
DDX56-201ENST00000258772 ADCY9O60503 1353 aa18.44■□□□□ 0.54
DDX56-201ENST00000258772 PSME1Q06323 249 aa18.44■□□□□ 0.54
DDX56-201ENST00000258772 CHD2O14647 1828 aaKnown RBP18.43■□□□□ 0.54
DDX56-201ENST00000258772 ZBTB7CA1YPR0 619 aa18.43■□□□□ 0.54
DDX56-201ENST00000258772 PLEKHO1Q53GL0 409 aaPredicted RBP18.43■□□□□ 0.54
DDX56-201ENST00000258772 HS1BP3Q53T59 392 aa18.43■□□□□ 0.54
DDX56-201ENST00000258772 MPRIPQ6WCQ1 1025 aa18.43■□□□□ 0.54
DDX56-201ENST00000258772 LRRC59Q96AG4 307 aaKnown RBP18.43■□□□□ 0.54
DDX56-201ENST00000258772 SNX14Q9Y5W7 946 aa18.43■□□□□ 0.54
DDX56-201ENST00000258772 TCHHQ07283 1943 aa18.43■□□□□ 0.54
DDX56-201ENST00000258772 LMO7Q8WWI1 1683 aa18.43■□□□□ 0.54
DDX56-201ENST00000258772 USP42Q9H9J4 1324 aaKnown RBP18.43■□□□□ 0.54
DDX56-201ENST00000258772 TTC41PQ6P2S7 1318 aa18.42■□□□□ 0.54
DDX56-201ENST00000258772 MTX1Q13505 466 aa18.42■□□□□ 0.54
DDX56-201ENST00000258772 RBM33Q96EV2 1170 aaKnown RBP18.42■□□□□ 0.54
DDX56-201ENST00000258772 DBF4Q9UBU7 674 aaPredicted RBP18.42■□□□□ 0.54
DDX56-201ENST00000258772 WDR33Q9C0J8 1336 aaKnown RBP18.42■□□□□ 0.54
DDX56-201ENST00000258772 TTC14Q96N46 770 aa18.41■□□□□ 0.54
DDX56-201ENST00000258772 GLRX3O76003 335 aaKnown RBP18.41■□□□□ 0.54
DDX56-201ENST00000258772 AMOTQ4VCS5 1084 aa18.41■□□□□ 0.54
DDX56-201ENST00000258772 ESCO1Q5FWF5 840 aa18.41■□□□□ 0.54
DDX56-201ENST00000258772 CWC27Q6UX04 472 aaKnown RBP18.41■□□□□ 0.54
DDX56-201ENST00000258772 KIAA1211Q6ZU35 1233 aa18.41■□□□□ 0.54
DDX56-201ENST00000258772 RASEFQ8IZ41 740 aa18.41■□□□□ 0.54
DDX56-201ENST00000258772 RNMTO43148 476 aaKnown RBP18.4■□□□□ 0.54
DDX56-201ENST00000258772 OS9Q13438 667 aaPredicted RBP18.4■□□□□ 0.54
DDX56-201ENST00000258772 MSNP26038 577 aaKnown RBP18.4■□□□□ 0.54
DDX56-201ENST00000258772 ADGRL3Q9HAR2 1447 aa18.39■□□□□ 0.54
DDX56-201ENST00000258772 CRYBG1Q9Y4K1 1723 aa18.39■□□□□ 0.54
DDX56-201ENST00000258772 CLASRPQ8N2M8 674 aaKnown RBP18.39■□□□□ 0.53
DDX56-201ENST00000258772 MAP3K2Q9Y2U5 619 aa18.39■□□□□ 0.53
DDX56-201ENST00000258772 PHRF1Q9P1Y6 1649 aaKnown RBP18.39■□□□□ 0.53
DDX56-201ENST00000258772 ALDH1L1O75891 902 aa18.39■□□□□ 0.53
DDX56-201ENST00000258772 C9orf78Q9NZ63 289 aaPredicted RBP18.39■□□□□ 0.53
DDX56-201ENST00000258772 SPG7Q9UQ90 795 aa18.39■□□□□ 0.53
DDX56-201ENST00000258772 GIGYF1O75420 1035 aaPredicted RBP18.38■□□□□ 0.53
DDX56-201ENST00000258772 AK2P54819 239 aa18.38■□□□□ 0.53
DDX56-201ENST00000258772 FOXD4L6Q3SYB3 417 aaPredicted RBP18.38■□□□□ 0.53
DDX56-201ENST00000258772 KSR2Q6VAB6 950 aa18.38■□□□□ 0.53
DDX56-201ENST00000258772 FOXD4L3Q6VB84 417 aaPredicted RBP18.38■□□□□ 0.53
DDX56-201ENST00000258772 USP48Q86UV5 1035 aa18.38■□□□□ 0.53
DDX56-201ENST00000258772 SYAP1Q96A49 352 aaPredicted RBP18.38■□□□□ 0.53
DDX56-201ENST00000258772 GDPD2Q9HCC8 539 aa18.38■□□□□ 0.53
DDX56-201ENST00000258772 C1orf141Q5JVX7 400 aa18.38■□□□□ 0.53
DDX56-201ENST00000258772 ANKLE2Q86XL3 938 aa18.38■□□□□ 0.53
DDX56-201ENST00000258772 NOL7Q9UMY1 257 aaKnown RBP18.38■□□□□ 0.53
DDX56-201ENST00000258772 LIMCH1Q9UPQ0 1083 aa18.38■□□□□ 0.53
DDX56-201ENST00000258772 RPAP1Q9BWH6 1393 aaPredicted RBP18.37■□□□□ 0.53
DDX56-201ENST00000258772 GADD45BO75293 160 aaPredicted RBP18.37■□□□□ 0.53
DDX56-201ENST00000258772 PROSER3Q2NL68 480 aa18.37■□□□□ 0.53
DDX56-201ENST00000258772 RUFY3Q7L099 469 aa18.37■□□□□ 0.53
DDX56-201ENST00000258772 GCP02774 474 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms