RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 KLHL25Q9H0H3 589 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 GAREM1Q9H706 876 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 NMRK1Q9NWW6 199 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 POMT2Q9UKY4 750 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 RUVBL1Q9Y265 456 aaKnown RBP17.81■□□□□ 0.44
CLN3-206ENST00000360019 RRP15Q9Y3B9 282 aaKnown RBP17.81■□□□□ 0.44
CLN3-206ENST00000360019 PCDHGA4Q9Y5G9 962 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 KLK4Q9Y5K2 254 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 PCDH15Q96QU1 1955 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 ADAMTS9Q9P2N4 1935 aa17.81■□□□□ 0.44
CLN3-206ENST00000360019 A0A0J9YY10 115 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 FBP2O00757 339 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 ZW10O43264 779 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 PRPS2P11908 318 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 PVRP15151 417 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 MAPK1P28482 360 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 SLC25A3Q00325 362 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 KHDRBS2Q5VWX1 349 aaKnown RBP17.8■□□□□ 0.44
CLN3-206ENST00000360019 KRTCAP2Q8N6L1 136 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 TTLQ8NG68 377 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 OR2I1PQ8NGU4 316 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 TSSK3Q96PN8 268 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 NPAS2Q99743 824 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 ABCG4Q9H172 646 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 C1orf21Q9H246 121 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.8■□□□□ 0.44
CLN3-206ENST00000360019 TMEM45AQ9NWC5 275 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 NLGN3Q9NZ94 848 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 LRIT1Q9P2V4 623 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 SLC6A14Q9UN76 642 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 CACNA1HO95180 2353 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 ZNF318Q5VUA4 2279 aa17.8■□□□□ 0.44
CLN3-206ENST00000360019 AIM2O14862 343 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 GYG2O15488 501 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 GALR2O43603 387 aaPredicted RBP17.79■□□□□ 0.44
CLN3-206ENST00000360019 PRAMEF10O60809 474 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 CLEC3AO75596 197 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 FKBP9O95302 570 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 PROS1P07225 676 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 MYF5P13349 255 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 AHRP35869 848 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 POLR2JP52435 117 aaKnown RBP17.79■□□□□ 0.44
CLN3-206ENST00000360019 CYP4F3Q08477 520 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 VPS26BQ4G0F5 336 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 DEPDC1Q5TB30 811 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 GALNT18Q6P9A2 607 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 FIGLAQ6QHK4 219 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 COMMD6Q7Z4G1 85 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 METTL4Q8N3J2 472 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 MFSD9Q8NBP5 474 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 EGLN2Q96KS0 407 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 F2RL3Q96RI0 385 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 AICDAQ9GZX7 198 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 SIRT5Q9NXA8 310 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 AP1M2Q9Y6Q5 423 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 MDC1Q14676 2089 aaKnown RBP17.79■□□□□ 0.44
CLN3-206ENST00000360019 FAM234BA2RU67 622 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 RHPN2P1A8MT19 583 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 TRIM38O00635 465 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 NUDT21O43809 227 aaKnown RBP17.79■□□□□ 0.44
CLN3-206ENST00000360019 CTSVO60911 334 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 STATHP02808 62 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 TIA1P31483 386 aaKnown RBP eCLIP17.79■□□□□ 0.44
CLN3-206ENST00000360019 HNRNPH1P31943 449 aaKnown RBP17.79■□□□□ 0.44
CLN3-206ENST00000360019 NUDT2P50583 147 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 CORO7P57737 925 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 MXRA7P84157 204 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 STX5Q13190 355 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 ZIC1Q15915 447 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 REP15Q6BDI9 236 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 ARMC6Q6NXE6 501 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 FBXO42Q6P3S6 717 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 KLHL35Q6PF15 583 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 WDR48Q8TAF3 677 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 BAHD1Q8TBE0 780 aaPredicted RBP17.79■□□□□ 0.44
CLN3-206ENST00000360019 ZUFSPQ96AP4 578 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 SPDL1Q96EA4 605 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 MACROD1Q9BQ69 325 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 ZNF717Q9BY31 904 aaPredicted RBP17.79■□□□□ 0.44
CLN3-206ENST00000360019 CADM1Q9BY67 442 aaKnown RBP17.79■□□□□ 0.44
CLN3-206ENST00000360019 SMOC1Q9H4F8 434 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 ANKMY1Q9P2S6 941 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 R4GN57 208 aa17.79■□□□□ 0.44
CLN3-206ENST00000360019 ASPDHA6ND91 283 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 PLPP1O14494 284 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 ARHGAP33O14559 1287 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 DFNA5O60443 496 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 SEMA3DO95025 777 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 SERPIND1P05546 499 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 ITGAXP20702 1163 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 GSTM2P28161 218 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 CLDN8P56748 225 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 KCNK10P57789 538 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 RPS15AP62244 130 aaKnown RBP17.78■□□□□ 0.44
CLN3-206ENST00000360019 HYAL2Q12891 473 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 CCDC6Q16204 474 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 VN1R4Q7Z5H5 301 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 RETREG3Q86VR2 466 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 TBC1D19Q8N5T2 526 aa17.78■□□□□ 0.44
CLN3-206ENST00000360019 UTP4Q969X6 686 aaKnown RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms