RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 HORMAD2Q8N7B1 307 aa16.86■□□□□ 0.29
SHKBP1-227ENST00000602011 PRELID2Q8N945 189 aa16.86■□□□□ 0.29
SHKBP1-227ENST00000602011 M1APQ8TC57 530 aa16.86■□□□□ 0.29
SHKBP1-227ENST00000602011 CCDC138Q96M89 665 aa16.86■□□□□ 0.29
SHKBP1-227ENST00000602011 PRAP1Q96NZ9 151 aa16.86■□□□□ 0.29
SHKBP1-227ENST00000602011 GALPQ9UBC7 116 aa16.86■□□□□ 0.29
SHKBP1-227ENST00000602011 MYO7BQ6PIF6 2116 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 CCL21O00585 134 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 UNC5CO95185 931 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 SYF2O95926 243 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 GRK3P35626 688 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 BCL6P41182 706 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 KCNJ1P48048 391 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 SKP1P63208 163 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 ZNF33BQ06732 778 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 MEP1AQ16819 746 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 ZNF470Q6ECI4 717 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 BNC2Q6ZN30 1099 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 MRGPRGQ86SM5 289 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 PALM2Q8IXS6 379 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 OR51Q1Q8NH59 317 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 THAP3Q8WTV1 239 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 FAM136AQ96C01 138 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 VN1R1Q9GZP7 353 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 CCDC177Q9NQR7 707 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 CSMD2Q7Z408 3487 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 PDZD2O15018 2839 aa16.85■□□□□ 0.29
SHKBP1-227ENST00000602011 F8P00451 2351 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 HAT1O14929 419 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 TTI1O43156 1089 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 RGS4P49798 205 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 SMSP52788 366 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 MEF2AQ02078 507 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 GPS1Q13098 491 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 ZNF766Q5HY98 468 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 ACER2Q5QJU3 275 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 UBE2R2Q712K3 238 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 CAND1Q86VP6 1230 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 LGI4Q8N135 537 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 PLPP5Q8NEB5 264 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 ITLN2Q8WWU7 325 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 TM4SF19Q96DZ7 209 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 ANKHQ9HCJ1 492 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 MMP25Q9NPA2 562 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 TSR3Q9UJK0 312 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 SLC22A7Q9Y694 548 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 AKAP9Q99996 3911 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 C2CD3Q4AC94 2353 aa16.84■□□□□ 0.29
SHKBP1-227ENST00000602011 TCRBV7S3A2A0A539 114 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 A8MUI8 341 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 SLC16A5O15375 505 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 CEP104O60308 925 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 AVILO75366 819 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 C8GP07360 202 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 CCDC175P0C221 793 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 IMPA1P29218 277 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 ZNF630Q2M218 657 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 BTBD16Q32M84 506 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 MINDY4Q4G0A6 757 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 TMEM214Q6NUQ4 689 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 AMER2Q8N7J2 671 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 SPC24Q8NBT2 197 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 PPFIBP2Q8ND30 876 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 OR9A4Q8NGU2 314 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 ZNF669Q96BR6 464 aaPredicted RBP16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 OR1F2PQ96R84 312 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 UTP23Q9BRU9 249 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 CLK4Q9HAZ1 481 aaKnown RBP16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 HEATR5BQ9P2D3 2071 aa16.83■□□□□ 0.28
SHKBP1-227ENST00000602011 ZCWPW2A0A1B0GU75 182 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 FFAR3O14843 346 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 GPR42O15529 346 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 P2RX6O15547 441 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 KRT14P02533 472 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 SNRPB2P08579 225 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 HIST1H2AGP0C0S8 130 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 SLC35G6P0C7Q6 338 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 CD46P15529 392 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 HIST1H2ADP20671 130 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 XCR1P46094 333 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 TAS2R50P59544 299 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 MAT1AQ00266 395 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 ACTN3Q08043 901 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 SP140Q13342 867 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 CTBP1Q13363 440 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 HERC3Q15034 1050 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 SYT16Q17RD7 645 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 MFSD4BQ5TF39 518 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 GDF7Q7Z4P5 450 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 C17orf64Q86WR6 236 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 TBC1D19Q8N5T2 526 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 SLC5A8Q8N695 610 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 GPATCH11Q8N954 259 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 TMEM178AQ8NBL3 297 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 FAM98AQ8NCA5 519 aaKnown RBP16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 CCDC120Q96HB5 630 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 HIST1H2AHQ96KK5 128 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 NAP1L3Q99457 506 aaPredicted RBP16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 LPAR4Q99677 370 aa16.82■□□□□ 0.28
SHKBP1-227ENST00000602011 GPR21Q99679 349 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 395.3 ms