RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 LACTBL1A8MY62 500 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 CACNB4O00305 520 aaPredicted RBP6.74□□□□□ -1.33
NUP54-215ENST00000514313 CAPN9O14815 690 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 SEC22BO75396 215 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 BMP15O95972 392 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 FGF5P12034 268 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 GAP43P17677 238 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 ALDH1B1P30837 517 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 NR2C2P49116 596 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 DVL1P1P54792 670 aaPredicted RBP6.74□□□□□ -1.33
NUP54-215ENST00000514313 GAS1P54826 345 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 TRAP1Q12931 704 aaKnown RBP6.74□□□□□ -1.33
NUP54-215ENST00000514313 SMC1AQ14683 1233 aaKnown RBP6.74□□□□□ -1.33
NUP54-215ENST00000514313 HERC3Q15034 1050 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 KCTD11Q693B1 232 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 PM20D1Q6GTS8 502 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 TTC27Q6P3X3 843 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 CTR9Q6PD62 1173 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 GPR141Q7Z602 305 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 EXOC3L1Q86VI1 746 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 NSL1Q96IY1 281 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 ZPBPQ9BS86 351 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 C1QTNF4Q9BXJ3 329 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 SLC39A8Q9C0K1 460 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 CUEDC2Q9H467 287 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 TFB2MQ9H5Q4 396 aaKnown RBP6.74□□□□□ -1.33
NUP54-215ENST00000514313 EVA1AQ9H8M9 152 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 UPF2Q9HAU5 1272 aaKnown RBP6.74□□□□□ -1.33
NUP54-215ENST00000514313 CD93Q9NPY3 652 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 PRMT8Q9NR22 394 aaPredicted RBP6.74□□□□□ -1.33
NUP54-215ENST00000514313 COMMD8Q9NX08 183 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 FAF1Q9UNN5 650 aaPredicted RBP6.74□□□□□ -1.33
NUP54-215ENST00000514313 CHKBQ9Y259 395 aa6.74□□□□□ -1.33
NUP54-215ENST00000514313 SYCE3A1L190 88 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 SMAD6O43541 496 aaKnown RBP6.73□□□□□ -1.33
NUP54-215ENST00000514313 DDHD2O94830 711 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 APOHP02749 345 aaPredicted RBP6.73□□□□□ -1.33
NUP54-215ENST00000514313 IGHV4-31P0DP07 118 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 EFNA1P20827 205 aaPredicted RBP6.73□□□□□ -1.33
NUP54-215ENST00000514313 CSTF2P33240 577 aaKnown RBP eCLIP6.73□□□□□ -1.33
NUP54-215ENST00000514313 CASP9P55211 416 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 MAZP56270 477 aaKnown RBP6.73□□□□□ -1.33
NUP54-215ENST00000514313 GCNT1Q02742 428 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 SLC35D3Q5M8T2 416 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 NADSYN1Q6IA69 706 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 PRSS57Q6UWY2 283 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 SIGLEC15Q6ZMC9 328 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 RBM23Q86U06 439 aaKnown RBP6.73□□□□□ -1.33
NUP54-215ENST00000514313 CLEC1AQ8NC01 280 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 SCRN2Q96FV2 425 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 TSSK2Q96PF2 358 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 OR2B2Q9GZK3 357 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 SDCBP2Q9H190 292 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 ABCG8Q9H221 673 aa6.73□□□□□ -1.33
NUP54-215ENST00000514313 MRPL17Q9NRX2 175 aaKnown RBP6.73□□□□□ -1.33
NUP54-215ENST00000514313 KRT87PA6NCN2 255 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 C16orf97H3BN30 126 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 O00370 1275 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 PRKNO60260 465 aaPredicted RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 ABHD2P08910 425 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 PCP11498 1178 aaKnown RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 CDK4P11802 303 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 F3P13726 295 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 DARSP14868 501 aaKnown RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 DUTP33316 252 aaKnown RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 SMSP52788 366 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 NANOS2P60321 138 aaKnown RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 GFPT1Q06210 699 aaPredicted RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 DMP1Q13316 513 aaPredicted RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 MAPK11Q15759 364 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 KLHL10Q6JEL2 608 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 FUT10Q6P4F1 479 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 MARK2Q7KZI7 788 aaKnown RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 ZNF410Q86VK4 478 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 NAGSQ8N159 534 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 ZNF383Q8NA42 475 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 SLC24A4Q8NFF2 622 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 SAP25Q8TEE9 199 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 RSPH1Q8WYR4 309 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 WBP2Q969T9 261 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 FAM46BQ96A09 425 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 ST6GAL2Q96JF0 529 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 SPATA13Q96N96 652 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 C17orf62Q9BQA9 187 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 RHNO1Q9BSD3 238 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 SHARPINQ9H0F6 387 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 C6orf106Q9H6K1 298 aaPredicted RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 CHST11Q9NPF2 352 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 GPR173Q9NS66 373 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 MAD2L2Q9UI95 211 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 KCNK6Q9Y257 313 aa6.72□□□□□ -1.33
NUP54-215ENST00000514313 TDRKHQ9Y2W6 561 aaKnown RBP6.72□□□□□ -1.33
NUP54-215ENST00000514313 TRAV18A0A075B6X5 111 aa6.71□□□□□ -1.34
NUP54-215ENST00000514313 A0A087X0K7 114 aa6.71□□□□□ -1.34
NUP54-215ENST00000514313 CD86P42081 329 aa6.71□□□□□ -1.34
NUP54-215ENST00000514313 GPR33Q49SQ1 333 aa6.71□□□□□ -1.34
NUP54-215ENST00000514313 TOM1L2Q6ZVM7 507 aa6.71□□□□□ -1.34
NUP54-215ENST00000514313 ASPGQ86U10 573 aa6.71□□□□□ -1.34
NUP54-215ENST00000514313 TDHQ8IZJ6 230 aa6.71□□□□□ -1.34
NUP54-215ENST00000514313 LRTM2Q8N967 370 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms