RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 WDR36Q8NI36 951 aaKnown RBP14.37□□□□□ -0.11
NUP54-213ENST00000513352 PPP1R14CQ8TAE6 165 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 ZUFSPQ96AP4 578 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 PKNOX2Q96KN3 472 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 NSUN5Q96P11 429 aaKnown RBP14.37□□□□□ -0.11
NUP54-213ENST00000513352 OR6C1Q96RD1 312 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 PELI2Q9HAT8 420 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 FAM60AQ9NP50 221 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 MLXIPLQ9NP71 852 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 SEMA4BQ9NPR2 832 aaPredicted RBP14.37□□□□□ -0.11
NUP54-213ENST00000513352 TMEM184CQ9NVA4 438 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 GPRC5BQ9NZH0 403 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 SEMA5BQ9P283 1151 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 PCTPQ9UKL6 214 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 KLK13Q9UKR3 277 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 BTRCQ9Y297 605 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 MDC1Q14676 2089 aaKnown RBP14.37□□□□□ -0.11
NUP54-213ENST00000513352 A0A0J9YVX5 310 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 FEZF1A0PJY2 475 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 WDR91A4D1P6 747 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 OR2A25A4D2G3 310 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 TMEM150CB9EJG8 249 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 E2F3O00716 465 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 KATNA1O75449 491 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 RPS17P08708 135 aaKnown RBP14.36□□□□□ -0.11
NUP54-213ENST00000513352 C1GALT1C1LP0DN25 315 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 CCL4P13236 92 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 TSPAN8P19075 237 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 ITIH1P19827 911 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 IMPDH1P20839 514 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 VARSP26640 1264 aaKnown RBP14.36□□□□□ -0.11
NUP54-213ENST00000513352 ALDH3A1P30838 453 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 GABREP78334 506 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 CSNK1G2P78368 415 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 ACY1Q03154 408 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 GPS2Q13227 327 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 CHIT1Q13231 466 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 EIF3IQ13347 325 aaKnown RBP14.36□□□□□ -0.11
NUP54-213ENST00000513352 ZC3H12BQ5HYM0 836 aaKnown RBP14.36□□□□□ -0.11
NUP54-213ENST00000513352 ZNF678Q5SXM1 525 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 LIPMQ5VYY2 423 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 PAQR7Q86WK9 346 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 CACTIN-AS1Q8N1I8 211 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 D2HGDHQ8N465 521 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 FCRL4Q96PJ5 515 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 ZFYVE21Q9BQ24 234 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 AIF1LQ9BQI0 150 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 NOL11Q9H8H0 719 aaKnown RBP14.36□□□□□ -0.11
NUP54-213ENST00000513352 IPPKQ9H8X2 491 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 FGF21Q9NSA1 209 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 SLC39A1Q9NY26 324 aa14.36□□□□□ -0.11
NUP54-213ENST00000513352 SPEGQ15772 3267 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 PMS2P1A4D2B8 440 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 ATP8B1O43520 1251 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 TRIM13O60858 407 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 CTSVO60911 334 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 EIF2S1P05198 315 aaKnown RBP14.35□□□□□ -0.11
NUP54-213ENST00000513352 EZRP15311 586 aaKnown RBP14.35□□□□□ -0.11
NUP54-213ENST00000513352 SERPINB4P48594 390 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 CCNG1P51959 295 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 NAGLUP54802 743 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 CDH13P55290 713 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 MPP2Q14168 576 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 SLBPQ14493 270 aaKnown RBP eCLIP14.35□□□□□ -0.11
NUP54-213ENST00000513352 RBBP5Q15291 538 aaKnown RBP14.35□□□□□ -0.11
NUP54-213ENST00000513352 UNC50Q53HI1 259 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 ATG9BQ674R7 924 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 ZNF425Q6IV72 752 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 METTL2BQ6P1Q9 378 aaKnown RBP14.35□□□□□ -0.11
NUP54-213ENST00000513352 CYB5D1Q6P9G0 228 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 SLCO4C1Q6ZQN7 724 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 NUDCD3Q8IVD9 361 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 MCATQ8IVS2 390 aaKnown RBP14.35□□□□□ -0.11
NUP54-213ENST00000513352 KRT78Q8N1N4 520 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 ABHD11Q8NFV4 315 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 TRPC4APQ8TEL6 797 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 ZNF483Q8TF39 744 aaPredicted RBP14.35□□□□□ -0.11
NUP54-213ENST00000513352 RERGQ96A58 199 aaPredicted RBP14.35□□□□□ -0.11
NUP54-213ENST00000513352 L3HYPDHQ96EM0 354 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 MOCOSQ96EN8 888 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 RNF31Q96EP0 1072 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 CTRCQ99895 268 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 SCNM1Q9BWG6 230 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 ACTR8Q9H981 624 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 OXSMQ9NWU1 459 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 SIDT1Q9NXL6 827 aaKnown RBP14.35□□□□□ -0.11
NUP54-213ENST00000513352 RARRES3Q9UL19 164 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 PLCL2Q9UPR0 1127 aa14.35□□□□□ -0.11
NUP54-213ENST00000513352 POLR1CO15160 346 aaPredicted RBP14.34□□□□□ -0.11
NUP54-213ENST00000513352 OR1F1O43749 312 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 STATHP02808 62 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 SERPIND1P05546 499 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 BPGMP07738 259 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 SPTBP11277 2137 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 FGF3P11487 239 aaPredicted RBP14.34□□□□□ -0.11
NUP54-213ENST00000513352 EPORP19235 508 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 ETV5P41161 510 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 ETV4P43268 484 aa14.34□□□□□ -0.11
NUP54-213ENST00000513352 VSX2P58304 361 aaPredicted RBP14.34□□□□□ -0.11
NUP54-213ENST00000513352 DNAJB13P59910 316 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms