RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 K7EPI3 171 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 STX16O14662 325 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 HGSO14964 777 aaPredicted RBP14.39□□□□□ -0.11
NUP54-213ENST00000513352 JMJD7P0C870 316 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 NPPBP16860 134 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 HPDP32754 393 aaPredicted RBP14.39□□□□□ -0.11
NUP54-213ENST00000513352 HSD11B2P80365 405 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 FOXM1Q08050 763 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 DEFB110Q30KQ9 67 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 C3orf38Q5JPI3 329 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 RAB11FIP2Q7L804 512 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 TMPRSS7Q7RTY8 843 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 KLHDC8AQ8IYD2 350 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 CCNYL1Q8N7R7 359 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 MGARPQ8TDB4 240 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 SLC5A11Q8WWX8 675 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 KLHL6Q8WZ60 621 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 NEIL2Q969S2 332 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 CCDC126Q96EE4 140 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 TCTN2Q96GX1 697 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 LIN37Q96GY3 246 aaPredicted RBP14.39□□□□□ -0.11
NUP54-213ENST00000513352 PRAP1Q96NZ9 151 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 SH3GL2Q99962 352 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 PAIP2Q9BPZ3 127 aaKnown RBP14.39□□□□□ -0.11
NUP54-213ENST00000513352 TWSG1Q9GZX9 223 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 ACSS2Q9NR19 701 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 IRAK4Q9NWZ3 460 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 COPG2Q9UBF2 871 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 SNX7Q9UNH6 387 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 ADAMTS20P59510 1910 aa14.39□□□□□ -0.11
NUP54-213ENST00000513352 TMEM120BA0PK00 339 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 HMGB1P1B2RPK0 211 aaPredicted RBP14.38□□□□□ -0.11
NUP54-213ENST00000513352 E7EQ34 232 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 G3V2L1 256 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 TM9SF1O15321 606 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 PRPF4O43172 522 aaKnown RBP eCLIP14.38□□□□□ -0.11
NUP54-213ENST00000513352 ZWINTO95229 277 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 EBLN1P0CF75 366 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 HGFP14210 728 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 EPB42P16452 691 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 NELFEP18615 380 aaKnown RBP14.38□□□□□ -0.11
NUP54-213ENST00000513352 SPINK2P20155 84 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 CCR8P51685 355 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 MAPK10P53779 464 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 HERVK_113P63132 956 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 SH3BP2P78314 561 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 NFKB2Q00653 900 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 CYP4F3Q08477 520 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 GTF2H2Q13888 395 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 PCBP2Q15366 365 aaKnown RBP eCLIP14.38□□□□□ -0.11
NUP54-213ENST00000513352 ZIC1Q15915 447 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 RBBP7Q16576 425 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 HSP90B2PQ58FF3 399 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 CFAP157Q5JU67 520 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 CATSPEREQ5SY80 951 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 HHATQ5VTY9 493 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 GTF2H2CQ6P1K8 395 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 RPS27LQ71UM5 84 aaKnown RBP14.38□□□□□ -0.11
NUP54-213ENST00000513352 GOLGA7Q7Z5G4 137 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 MYLK4Q86YV6 388 aaPredicted RBP14.38□□□□□ -0.11
NUP54-213ENST00000513352 C10orf107Q8IVU9 208 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 SREK1Q8WXA9 508 aaKnown RBP14.38□□□□□ -0.11
NUP54-213ENST00000513352 ATP6V1E2Q96A05 226 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 GRAMD1AQ96CP6 724 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 SLC41A2Q96JW4 573 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 TMEM237Q96Q45 408 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 PLCD4Q9BRC7 762 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 MECRQ9BV79 373 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 ERVK-6Q9BXR3 956 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 CAPS2Q9BXY5 557 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 FANCEQ9HB96 536 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 OCIAD1Q9NX40 245 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 NKIRAS1Q9NYS0 192 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 ANKMY1Q9P2S6 941 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 PISDQ9UG56 409 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 SATB2Q9UPW6 733 aa14.38□□□□□ -0.11
NUP54-213ENST00000513352 IGKV1-8A0A0C4DH67 115 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 HAT1O14929 419 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 PLD2O14939 933 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 NRP2O60462 931 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 H2AFYO75367 372 aaKnown RBP14.37□□□□□ -0.11
NUP54-213ENST00000513352 SUPT7LO94864 414 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 NEFHP12036 1026 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 FOLR1P15328 257 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 GNAZP19086 355 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 HRH2P25021 359 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 GRK3P35626 688 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 PIK3CGP48736 1102 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 PRKAA2P54646 552 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 MEF2AQ02078 507 aaPredicted RBP14.37□□□□□ -0.11
NUP54-213ENST00000513352 IRF8Q02556 426 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 ASPHQ12797 758 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 TUBB3Q13509 450 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 PCLAFQ15004 111 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 GPR19Q15760 415 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 XKR6Q5GH73 641 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 FCRL6Q6DN72 434 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 NXPE4Q6UWF7 544 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 PLD3Q8IV08 490 aa14.37□□□□□ -0.11
NUP54-213ENST00000513352 TBC1D19Q8N5T2 526 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms