RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TYSND1Q2T9J0 566 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 PTCHD3Q3KNS1 767 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 PAPD7Q5XG87 772 aaKnown RBP18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 KIAA0930Q6ICG6 404 aaPredicted RBP18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 RAB43Q86YS6 212 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 HPS6Q86YV9 775 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 RASGEF1CQ8N431 466 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 OTUD6BQ8N6M0 293 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 MFSD3Q96ES6 412 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 SLC25A23Q9BV35 468 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 TRIM55Q9BYV6 548 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 SPRTNQ9H040 489 aaPredicted RBP18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 MLXIPLQ9NP71 852 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 SYBUQ9NX95 663 aa18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 GPN3Q9UHW5 284 aaPredicted RBP18.37■□□□□ 0.53
CCDC28A-203ENST00000617445 ARGFXA6NJG6 315 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 TMEM63AO94886 807 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 ESR1P03372 595 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 MLNP12872 115 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 ARNTP27540 789 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 PGDP52209 483 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 EIF3BP55884 814 aaKnown RBP18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 FOXK1P85037 733 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 GPS1Q13098 491 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 GRB7Q14451 532 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 KCNJ11Q14654 390 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 SSPNQ14714 243 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 PCM1Q15154 2024 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 ZC3H12BQ5HYM0 836 aaKnown RBP18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 LINC01555Q8NAE3 123 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 DLG3Q92796 817 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 ZUFSPQ96AP4 578 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 NDC1Q9BTX1 674 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 TXLNGQ9NUQ3 528 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 EURLQ9NYK6 297 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 CCDC88CQ9P219 2028 aa18.36■□□□□ 0.53
CCDC28A-203ENST00000617445 TARM1B6A8C7 271 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 K7EM74 188 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 CEACAM4O75871 244 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 DNAJB5O75953 348 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 IGHEP01854 428 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 KRT14P02533 472 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 OGNP20774 298 aaKnown RBP18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 ATP5DP30049 168 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 PTGIRP43119 386 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 CCL11P51671 97 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 ARSFP54793 590 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 SF1Q15637 639 aaKnown RBP18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 ZNF655Q8N720 491 aaPredicted RBP18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 MCUQ8NE86 351 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 HMGCLL1Q8TB92 370 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 SKA2Q8WVK7 121 aaPredicted RBP18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 LPGAT1Q92604 370 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 MAGOHBQ96A72 148 aaKnown RBP18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 BIRC8Q96P09 236 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 GBP5Q96PP8 586 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 XAB2Q9HCS7 855 aaKnown RBP18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 ENAMQ9NRM1 1142 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 IRAK4Q9NWZ3 460 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 SAMD15Q9P1V8 674 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 ZNF451Q9Y4E5 1061 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 PTPN13Q12923 2485 aa18.35■□□□□ 0.53
CCDC28A-203ENST00000617445 FAM237BA0A1B0GVD1 139 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 TCRBV7S3A2A0A539 114 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 SDR42E2A6NKP2 422 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 KLF7O75840 302 aaPredicted RBP18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 C1orf105O95561 183 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 CBSLP0DN79 551 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 NR1D1P20393 614 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 MAGP20916 626 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 CBSP35520 551 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 NAA25Q14CX7 972 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 TRIP13Q15645 432 aaPredicted RBP18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 DEFB110Q30KQ9 67 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 TCTE1Q5JU00 501 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 YOD1Q5VVQ6 348 aaPredicted RBP18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 MLIPQ5VWP3 458 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 CPZQ66K79 652 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 CASC4Q6P4E1 433 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 MCATQ8IVS2 390 aaKnown RBP18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 ZBTB2Q8N680 514 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 INTS10Q9NVR2 710 aaKnown RBP18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 IFT80Q9P2H3 777 aaPredicted RBP18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 NDOR1Q9UHB4 597 aa18.34■□□□□ 0.53
CCDC28A-203ENST00000617445 LRRK2Q5S007 2527 aa18.33■□□□□ 0.53
CCDC28A-203ENST00000617445 HECTD1Q9ULT8 2610 aa18.33■□□□□ 0.53
CCDC28A-203ENST00000617445 HCRTR1O43613 425 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 PRICKLE3O43900 615 aaPredicted RBP18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 KLHL41O60662 606 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 PIM1P11309 404 aaPredicted RBP18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 FMO4P31512 558 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 CYP1B1Q16678 543 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 NKAIN1Q4KMZ8 207 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 CTSL3PQ5NE16 218 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 NEPROQ6NW34 567 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 FIGLAQ6QHK4 219 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 CES3Q6UWW8 571 aa18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 CAND1Q86VP6 1230 aaKnown RBP18.33■□□□□ 0.52
CCDC28A-203ENST00000617445 LMNTD1Q8N9Z9 388 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms