RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 MT-ND3P03897 115 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 C8GP07360 202 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 EBLN1P0CF75 366 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 FGF5P12034 268 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 CYP2A7P20853 494 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 FDXRP22570 491 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 MCM3P25205 808 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 SLC12A2P55011 1212 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 TUBB4BP68371 445 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 SH3BP2P78314 561 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 ARHGAP19Q14CB8 494 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.56□□□□□ -0.4
CLK3-224ENST00000568605 HECTD2Q5U5R9 776 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 C3orf62Q6ZUJ4 267 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 CYS1Q717R9 158 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 IL22RA1Q8N6P7 574 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 C19orf47Q8N9M1 422 aaKnown RBP12.56□□□□□ -0.4
CLK3-224ENST00000568605 FBXO15Q8NCQ5 510 aaPredicted RBP12.56□□□□□ -0.4
CLK3-224ENST00000568605 HMGCLL1Q8TB92 370 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 N4BP2L2Q92802 583 aaPredicted RBP12.56□□□□□ -0.4
CLK3-224ENST00000568605 ELMO2Q96JJ3 720 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 CPNE1Q99829 537 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 CTRCQ99895 268 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 ULBP3Q9BZM4 244 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 FGF21Q9NSA1 209 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.56□□□□□ -0.4
CLK3-224ENST00000568605 GALPQ9UBC7 116 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 MED16Q9Y2X0 877 aa12.56□□□□□ -0.4
CLK3-224ENST00000568605 SLC9B1P1A6NJY1 282 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 ARHGEF33A8MVX0 844 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 MYO1CO00159 1063 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 STK17BO94768 372 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 SYF2O95926 243 aaKnown RBP12.55□□□□□ -0.4
CLK3-224ENST00000568605 MSL3P1P0C860 447 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 ST6GAL1P15907 406 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 GABRB3P28472 473 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 GP5P40197 560 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 IL2P60568 153 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 TLE3Q04726 772 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 CLN3Q13286 438 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 MAP7Q14244 749 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 GRB7Q14451 532 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 MANEAQ5SRI9 462 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 UBE2R2Q712K3 238 aaPredicted RBP12.55□□□□□ -0.4
CLK3-224ENST00000568605 PIWIL4Q7Z3Z4 852 aaKnown RBP12.55□□□□□ -0.4
CLK3-224ENST00000568605 TAX1BP1Q86VP1 789 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 ZC3HC1Q86WB0 502 aaKnown RBP12.55□□□□□ -0.4
CLK3-224ENST00000568605 ZFAND4Q86XD8 727 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 CTAGE3PQ8IX95 158 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 NLGN4XQ8N0W4 816 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 ESX1Q8N693 406 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 NLGN4YQ8NFZ3 816 aaPredicted RBP12.55□□□□□ -0.4
CLK3-224ENST00000568605 OR9A1PQ8NGU1 263 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 PMEPA1Q969W9 287 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 KIAA1143Q96AT1 154 aaPredicted RBP12.55□□□□□ -0.4
CLK3-224ENST00000568605 LINGO1Q96FE5 620 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 TSPAN17Q96FV3 270 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 TCTN2Q96GX1 697 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 TRAPPC9Q96Q05 1148 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 OR2A14Q96R47 310 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 SLC30A3Q99726 388 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 MENTQ9BUN1 341 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 CHRNA10Q9GZZ6 450 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 APMAPQ9HDC9 416 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 ZDHHC18Q9NUE0 388 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 CIDEBQ9UHD4 219 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 VWA7Q9Y334 891 aa12.55□□□□□ -0.4
CLK3-224ENST00000568605 TMEM184BQ9Y519 407 aaPredicted RBP12.55□□□□□ -0.4
CLK3-224ENST00000568605 FAM159BA6NKW6 160 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 SLC16A5O15375 505 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 RAD1O60671 282 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 CCNDBP1O95273 360 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 HIST1H2AGP0C0S8 130 aaPredicted RBP12.54□□□□□ -0.4
CLK3-224ENST00000568605 TPBGLP0DKB5 382 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 ERGP11308 486 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 ZNF37AP17032 561 aaPredicted RBP12.54□□□□□ -0.4
CLK3-224ENST00000568605 HIST1H2ADP20671 130 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 OAS2P29728 719 aaKnown RBP12.54□□□□□ -0.4
CLK3-224ENST00000568605 CDKN2DP55273 166 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 KCNAB1Q14722 419 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 TRADDQ15628 312 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 SF1Q15637 639 aaKnown RBP12.54□□□□□ -0.4
CLK3-224ENST00000568605 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.54□□□□□ -0.4
CLK3-224ENST00000568605 FBXO38Q6PIJ6 1188 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 PAQR3Q6TCH7 311 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 DTX1Q86Y01 620 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 TMEM126BQ8IUX1 230 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 IFT20Q8IY31 132 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 GPR135Q8IZ08 494 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 CACNA2D3Q8IZS8 1091 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 LINC01555Q8NAE3 123 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 MCOLN3Q8TDD5 553 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 IFT81Q8WYA0 676 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 HIST1H2AHQ96KK5 128 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 IL17FQ96PD4 163 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 CCNL2Q96S94 520 aaPredicted RBP12.54□□□□□ -0.4
CLK3-224ENST00000568605 RBBP8Q99708 897 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 HIST1H2AJQ99878 128 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 H2AFJQ9BTM1 129 aa12.54□□□□□ -0.4
CLK3-224ENST00000568605 EFHD1Q9BUP0 239 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms