RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CCT8L1PA6NM43 557 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 GOLGA8NF8WBI6 632 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 GIPC1O14908 333 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 LAMTOR5O43504 91 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 DCTN3O75935 186 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 RPN2P04844 631 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 PIK3CGP48736 1102 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 INHBCP55103 352 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 ARMCX6Q7L4S7 300 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 THOC6Q86W42 341 aaKnown RBP18.07■□□□□ 0.48
CLN3-206ENST00000360019 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLN3-206ENST00000360019 LRRC56Q8IYG6 542 aaPredicted RBP18.07■□□□□ 0.48
CLN3-206ENST00000360019 CDYL2Q8N8U2 506 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 TMEM105Q8N8V8 129 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 TWIST2Q8WVJ9 160 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 DNASE2BQ8WZ79 361 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 MED8Q96G25 268 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 MAELQ96JY0 434 aaKnown RBP18.07■□□□□ 0.48
CLN3-206ENST00000360019 IL17FQ96PD4 163 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 OR4K3Q96R72 315 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 MENTQ9BUN1 341 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 NTMT1Q9BV86 223 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 TUBB1Q9H4B7 451 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 DNAJC11Q9NVH1 559 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 STK38LQ9Y2H1 464 aa18.07■□□□□ 0.48
CLN3-206ENST00000360019 A6NCN8 305 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 TRPC5OSA6NMA1 111 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 SDHDO14521 159 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 KATNA1O75449 491 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 ARL1P40616 181 aaPredicted RBP18.06■□□□□ 0.48
CLN3-206ENST00000360019 TBPL1P62380 186 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 FASTKQ14296 549 aaKnown RBP18.06■□□□□ 0.48
CLN3-206ENST00000360019 RPE65Q16518 533 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 ABRAXAS1Q6UWZ7 409 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 MILR1Q7Z6M3 343 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 IQCHQ86VS3 1027 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 WDR5BQ86VZ2 330 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 SPATS2Q86XZ4 545 aaKnown RBP18.06■□□□□ 0.48
CLN3-206ENST00000360019 C1orf210Q8IVY1 113 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 SYTL1Q8IYJ3 562 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 SNX31Q8N9S9 440 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 STON2Q8WXE9 905 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 CCT6BQ92526 530 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 ERP27Q96DN0 273 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 PRR11Q96HE9 360 aaPredicted RBP18.06■□□□□ 0.48
CLN3-206ENST00000360019 LRRC37BQ96QE4 947 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 FERD3LQ96RJ6 166 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 MEAF6Q9HAF1 191 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 TCF7L2Q9NQB0 619 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 PCOLCE2Q9UKZ9 415 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 APOBEC2Q9Y235 224 aaKnown RBP18.06■□□□□ 0.48
CLN3-206ENST00000360019 PTGDR2Q9Y5Y4 395 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 SDK1Q7Z5N4 2213 aa18.06■□□□□ 0.48
CLN3-206ENST00000360019 E7ENX8 843 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 PRAMEF4O60810 478 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 CAPN1P07384 714 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 UROSP10746 265 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 PNLIPRP1P54315 467 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 TAP2Q03519 686 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 TCHHL1Q5QJ38 904 aaPredicted RBP18.05■□□□□ 0.48
CLN3-206ENST00000360019 PRAMEF9Q5VWM5 478 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 WASH2PQ6VEQ5 465 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 DCP2Q8IU60 420 aaKnown RBP18.05■□□□□ 0.48
CLN3-206ENST00000360019 PHACTR4Q8IZ21 702 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 GPBAR1Q8TDU6 330 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 NMUR2Q9GZQ4 415 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 MYLK2Q9H1R3 596 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 WASH6PQ9NQA3 447 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 SPAG17Q6Q759 2223 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 PRAMEF33A0A0G2JMD5 474 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 TLR4O00206 839 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 PIP5K1BO14986 540 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 CRCPO75575 148 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 CELA2BP08218 269 aaPredicted RBP18.05■□□□□ 0.48
CLN3-206ENST00000360019 EBLN1P0CF75 366 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 ERGP11308 486 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 ILF3Q12906 894 aaKnown RBP eCLIP18.05■□□□□ 0.48
CLN3-206ENST00000360019 CDC16Q13042 620 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 SRSF5Q13243 272 aaKnown RBP18.05■□□□□ 0.48
CLN3-206ENST00000360019 LSM12Q3MHD2 195 aaKnown RBP18.05■□□□□ 0.48
CLN3-206ENST00000360019 RGL4Q8IZJ4 473 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 C19orf60Q96EN9 201 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 C3orf30Q96M34 536 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 SGPP1Q9BX95 441 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 NUSAP1Q9BXS6 441 aaKnown RBP18.05■□□□□ 0.48
CLN3-206ENST00000360019 BTRCQ9Y297 605 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 RNF11Q9Y3C5 154 aa18.05■□□□□ 0.48
CLN3-206ENST00000360019 MTHFD1P11586 935 aaKnown RBP18.04■□□□□ 0.48
CLN3-206ENST00000360019 HALP42357 657 aa18.04■□□□□ 0.48
CLN3-206ENST00000360019 CSTF1Q05048 431 aaKnown RBP18.04■□□□□ 0.48
CLN3-206ENST00000360019 LONP2Q86WA8 852 aa18.04■□□□□ 0.48
CLN3-206ENST00000360019 METTL6Q8TCB7 284 aa18.04■□□□□ 0.48
CLN3-206ENST00000360019 FANCMQ8IYD8 2048 aa18.04■□□□□ 0.48
CLN3-206ENST00000360019 E9PBE3 544 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 FCHO1O14526 889 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 KLHL41O60662 606 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 ENO1P06733 434 aaKnown RBP18.03■□□□□ 0.48
CLN3-206ENST00000360019 HGFP14210 728 aa18.03■□□□□ 0.48
CLN3-206ENST00000360019 CAPN13Q6MZZ7 669 aaPredicted RBP18.03■□□□□ 0.48
CLN3-206ENST00000360019 SUSD1Q6UWL2 747 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms