RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 KDRP35968 1356 aa28.45■■■□□ 2.14
TRAPPC3-208ENST00000616074 GNPATO15228 680 aa28.44■■■□□ 2.14
TRAPPC3-208ENST00000616074 PLEKHO1Q53GL0 409 aaPredicted RBP28.44■■■□□ 2.14
TRAPPC3-208ENST00000616074 ZNF831Q5JPB2 1677 aa28.44■■■□□ 2.14
TRAPPC3-208ENST00000616074 KDM6AO15550 1401 aaPredicted RBP28.43■■■□□ 2.14
TRAPPC3-208ENST00000616074 ERVV-2B6SEH9 535 aa28.43■■■□□ 2.14
TRAPPC3-208ENST00000616074 GRIN3BO60391 1043 aa28.43■■■□□ 2.14
TRAPPC3-208ENST00000616074 AEBP1Q8IUX7 1158 aa28.43■■■□□ 2.14
TRAPPC3-208ENST00000616074 DCAF5Q96JK2 942 aa28.43■■■□□ 2.14
TRAPPC3-208ENST00000616074 KNSTRNQ9Y448 316 aa28.43■■■□□ 2.14
TRAPPC3-208ENST00000616074 HSP90AB1P08238 724 aaKnown RBP28.42■■■□□ 2.14
TRAPPC3-208ENST00000616074 ZNF530Q6P9A1 599 aaPredicted RBP28.42■■■□□ 2.14
TRAPPC3-208ENST00000616074 COL5A3P25940 1745 aaPredicted RBP28.42■■■□□ 2.14
TRAPPC3-208ENST00000616074 AMOTQ4VCS5 1084 aa28.41■■■□□ 2.14
TRAPPC3-208ENST00000616074 SLC4A9Q96Q91 983 aa28.4■■■□□ 2.14
TRAPPC3-208ENST00000616074 RBM42Q9BTD8 480 aaKnown RBP28.38■■■□□ 2.13
TRAPPC3-208ENST00000616074 SULT6B1Q6IMI4 303 aa28.37■■■□□ 2.13
TRAPPC3-208ENST00000616074 KIF7Q2M1P5 1343 aa28.37■■■□□ 2.13
TRAPPC3-208ENST00000616074 AMER1Q5JTC6 1135 aaPredicted RBP28.36■■■□□ 2.13
TRAPPC3-208ENST00000616074 IL13P35225 146 aa28.35■■■□□ 2.13
TRAPPC3-208ENST00000616074 CABP4P57796 275 aa28.35■■■□□ 2.13
TRAPPC3-208ENST00000616074 MTHFSP49914 203 aa28.34■■■□□ 2.13
TRAPPC3-208ENST00000616074 C1QTNF8P60827 252 aa28.34■■■□□ 2.13
TRAPPC3-208ENST00000616074 C1orf141Q5JVX7 400 aa28.34■■■□□ 2.13
TRAPPC3-208ENST00000616074 SCN11AQ9UI33 1791 aa28.34■■■□□ 2.13
TRAPPC3-208ENST00000616074 RTCBQ9Y3I0 505 aaKnown RBP28.33■■■□□ 2.13
TRAPPC3-208ENST00000616074 MYH14Q7Z406 1995 aaKnown RBP28.32■■■□□ 2.12
TRAPPC3-208ENST00000616074 TRAPPC3LQ5T215 181 aa28.31■■■□□ 2.12
TRAPPC3-208ENST00000616074 WWC3Q9ULE0 1092 aa28.31■■■□□ 2.12
TRAPPC3-208ENST00000616074 CNTNAP4Q9C0A0 1308 aa28.31■■■□□ 2.12
TRAPPC3-208ENST00000616074 C4AP0C0L4 1744 aa28.31■■■□□ 2.12
TRAPPC3-208ENST00000616074 KIF13BQ9NQT8 1826 aa28.31■■■□□ 2.12
TRAPPC3-208ENST00000616074 GIGYF1O75420 1035 aaPredicted RBP28.3■■■□□ 2.12
TRAPPC3-208ENST00000616074 MMP10P09238 476 aa28.3■■■□□ 2.12
TRAPPC3-208ENST00000616074 RC3H1Q5TC82 1133 aaKnown RBP28.3■■■□□ 2.12
TRAPPC3-208ENST00000616074 CICQ96RK0 1608 aaPredicted RBP28.29■■■□□ 2.12
TRAPPC3-208ENST00000616074 TJP1Q07157 1748 aa28.29■■■□□ 2.12
TRAPPC3-208ENST00000616074 KIAA1551Q9HCM1 1747 aa28.29■■■□□ 2.12
TRAPPC3-208ENST00000616074 NFATC2IPQ8NCF5 419 aa28.28■■■□□ 2.12
TRAPPC3-208ENST00000616074 ARHGEF1Q92888 912 aaKnown RBP28.28■■■□□ 2.12
TRAPPC3-208ENST00000616074 ATP10DQ9P241 1426 aa28.27■■■□□ 2.12
TRAPPC3-208ENST00000616074 VIRMAQ69YN4 1812 aaKnown RBP28.27■■■□□ 2.12
TRAPPC3-208ENST00000616074 SENP3-EIF4A1A0A087X0R7 540 aa28.26■■■□□ 2.11
TRAPPC3-208ENST00000616074 PTCD1O75127 700 aaKnown RBP28.26■■■□□ 2.11
TRAPPC3-208ENST00000616074 RPS6KA4O75676 772 aa28.26■■■□□ 2.11
TRAPPC3-208ENST00000616074 ADRA2BP18089 450 aa28.26■■■□□ 2.11
TRAPPC3-208ENST00000616074 N4BP2Q86UW6 1770 aaPredicted RBP28.25■■■□□ 2.11
TRAPPC3-208ENST00000616074 PER1O15534 1290 aaPredicted RBP28.24■■■□□ 2.11
TRAPPC3-208ENST00000616074 NLGN1Q8N2Q7 840 aa28.24■■■□□ 2.11
TRAPPC3-208ENST00000616074 PXDNLA1KZ92 1463 aa28.23■■■□□ 2.11
TRAPPC3-208ENST00000616074 GYS1P13807 737 aa28.23■■■□□ 2.11
TRAPPC3-208ENST00000616074 AKAP4Q5JQC9 854 aa28.23■■■□□ 2.11
TRAPPC3-208ENST00000616074 ADCY9O60503 1353 aa28.23■■■□□ 2.11
TRAPPC3-208ENST00000616074 RFC4P35249 363 aa28.22■■■□□ 2.11
TRAPPC3-208ENST00000616074 C10orf71Q711Q0 1435 aa28.21■■■□□ 2.11
TRAPPC3-208ENST00000616074 HMOX1P09601 288 aa28.21■■■□□ 2.11
TRAPPC3-208ENST00000616074 CRKLP46109 303 aaKnown RBP28.21■■■□□ 2.11
TRAPPC3-208ENST00000616074 CC2D1BQ5T0F9 858 aaKnown RBP28.21■■■□□ 2.11
TRAPPC3-208ENST00000616074 MRC1P22897 1456 aa28.2■■■□□ 2.1
TRAPPC3-208ENST00000616074 LGR6Q9HBX8 967 aa28.19■■■□□ 2.1
TRAPPC3-208ENST00000616074 SLC52A2Q9HAB3 445 aa28.18■■■□□ 2.1
TRAPPC3-208ENST00000616074 ADAMTS7Q9UKP4 1686 aa28.17■■■□□ 2.1
TRAPPC3-208ENST00000616074 DIAPH1O60610 1272 aaKnown RBP28.16■■■□□ 2.1
TRAPPC3-208ENST00000616074 TGFB2P61812 414 aa28.16■■■□□ 2.1
TRAPPC3-208ENST00000616074 BRCA1P38398 1863 aaKnown RBP28.16■■■□□ 2.1
TRAPPC3-208ENST00000616074 RNMTO43148 476 aaKnown RBP28.15■■■□□ 2.1
TRAPPC3-208ENST00000616074 CCDC87Q9NVE4 849 aa28.15■■■□□ 2.1
TRAPPC3-208ENST00000616074 SRP68Q9UHB9 627 aaKnown RBP28.15■■■□□ 2.1
TRAPPC3-208ENST00000616074 PARP3Q9Y6F1 533 aa28.15■■■□□ 2.1
TRAPPC3-208ENST00000616074 A0A0G2JLW4 131 aa28.14■■■□□ 2.1
TRAPPC3-208ENST00000616074 MTHFSDQ2M296 383 aaKnown RBP28.14■■■□□ 2.1
TRAPPC3-208ENST00000616074 GPBP1L1Q9HC44 474 aaPredicted RBP28.14■■■□□ 2.1
TRAPPC3-208ENST00000616074 COL3A1P02461 1466 aaPredicted RBP28.14■■■□□ 2.09
TRAPPC3-208ENST00000616074 INTS5Q6P9B9 1019 aaKnown RBP28.13■■■□□ 2.09
TRAPPC3-208ENST00000616074 USP42Q9H9J4 1324 aaKnown RBP28.13■■■□□ 2.09
TRAPPC3-208ENST00000616074 KCPQ6ZWJ8 1503 aa28.13■■■□□ 2.09
TRAPPC3-208ENST00000616074 DNAJC10Q8IXB1 793 aa28.12■■■□□ 2.09
TRAPPC3-208ENST00000616074 ZNF526Q8TF50 670 aaPredicted RBP28.12■■■□□ 2.09
TRAPPC3-208ENST00000616074 SLC39A6Q13433 755 aa28.11■■■□□ 2.09
TRAPPC3-208ENST00000616074 FKBP8Q14318 412 aa28.11■■■□□ 2.09
TRAPPC3-208ENST00000616074 BCS1LQ9Y276 419 aa28.11■■■□□ 2.09
TRAPPC3-208ENST00000616074 NPC1L1Q9UHC9 1359 aa28.11■■■□□ 2.09
TRAPPC3-208ENST00000616074 DPEP1P16444 411 aa28.1■■■□□ 2.09
TRAPPC3-208ENST00000616074 CNGB1Q14028 1251 aaPredicted RBP28.1■■■□□ 2.09
TRAPPC3-208ENST00000616074 UBR2Q8IWV8 1755 aa28.09■■■□□ 2.09
TRAPPC3-208ENST00000616074 CEP350Q5VT06 3117 aa28.09■■■□□ 2.09
TRAPPC3-208ENST00000616074 DDR1Q08345 913 aa28.08■■■□□ 2.09
TRAPPC3-208ENST00000616074 ARFGEF1Q9Y6D6 1849 aa28.06■■■□□ 2.08
TRAPPC3-208ENST00000616074 CYP19A1P11511 503 aaPredicted RBP28.06■■■□□ 2.08
TRAPPC3-208ENST00000616074 SOS1Q07889 1333 aaPredicted RBP28.06■■■□□ 2.08
TRAPPC3-208ENST00000616074 KCNA3P22001 575 aa28.04■■■□□ 2.08
TRAPPC3-208ENST00000616074 U2SURPO15042 1029 aaKnown RBP28.03■■■□□ 2.08
TRAPPC3-208ENST00000616074 FCHSD2O94868 740 aa28.03■■■□□ 2.08
TRAPPC3-208ENST00000616074 USPL1Q5W0Q7 1092 aa28.03■■■□□ 2.08
TRAPPC3-208ENST00000616074 ZBTB1Q9Y2K1 713 aa28.02■■■□□ 2.08
TRAPPC3-208ENST00000616074 SIPA1L3O60292 1781 aaPredicted RBP28.01■■■□□ 2.08
TRAPPC3-208ENST00000616074 COL15A1P39059 1388 aa28.01■■■□□ 2.07
TRAPPC3-208ENST00000616074 POLRMTO00411 1230 aaKnown RBP28.01■■■□□ 2.07
TRAPPC3-208ENST00000616074 ZPR1O75312 459 aa28.01■■■□□ 2.07
TRAPPC3-208ENST00000616074 TM4SF1P30408 202 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms