RNA–Protein interactions for RNA: ENST00000593425.5

LIG1-205, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-205ENST00000593425 ZNF831Q5JPB2 1677 aa22.53■■□□□ 1.2
LIG1-205ENST00000593425 GNPATO15228 680 aa22.53■■□□□ 1.2
LIG1-205ENST00000593425 ATP6V1AP38606 617 aa22.53■■□□□ 1.2
LIG1-205ENST00000593425 PANK3Q9H999 370 aa22.53■■□□□ 1.2
LIG1-205ENST00000593425 COL5A3P25940 1745 aaPredicted RBP22.53■■□□□ 1.2
LIG1-205ENST00000593425 EIF4G2P78344 907 aaKnown RBP eCLIP22.52■■□□□ 1.2
LIG1-205ENST00000593425 ATP10DQ9P241 1426 aa22.51■■□□□ 1.19
LIG1-205ENST00000593425 WWC3Q9ULE0 1092 aa22.5■■□□□ 1.19
LIG1-205ENST00000593425 KDM6AO15550 1401 aaPredicted RBP22.49■■□□□ 1.19
LIG1-205ENST00000593425 SLC4A9Q96Q91 983 aa22.49■■□□□ 1.19
LIG1-205ENST00000593425 KIAA1551Q9HCM1 1747 aa22.48■■□□□ 1.19
LIG1-205ENST00000593425 KIF13BQ9NQT8 1826 aa22.47■■□□□ 1.19
LIG1-205ENST00000593425 ADCY9O60503 1353 aa22.47■■□□□ 1.19
LIG1-205ENST00000593425 CICQ96RK0 1608 aaPredicted RBP22.46■■□□□ 1.19
LIG1-205ENST00000593425 C4AP0C0L4 1744 aa22.45■■□□□ 1.19
LIG1-205ENST00000593425 ERVV-2B6SEH9 535 aa22.45■■□□□ 1.18
LIG1-205ENST00000593425 ZNF530Q6P9A1 599 aaPredicted RBP22.45■■□□□ 1.18
LIG1-205ENST00000593425 AEBP1Q8IUX7 1158 aa22.45■■□□□ 1.18
LIG1-205ENST00000593425 DCAF5Q96JK2 942 aa22.45■■□□□ 1.18
LIG1-205ENST00000593425 HSP90AB1P08238 724 aaKnown RBP22.44■■□□□ 1.18
LIG1-205ENST00000593425 PLEKHO1Q53GL0 409 aaPredicted RBP22.44■■□□□ 1.18
LIG1-205ENST00000593425 N4BP2Q86UW6 1770 aaPredicted RBP22.44■■□□□ 1.18
LIG1-205ENST00000593425 RBM42Q9BTD8 480 aaKnown RBP22.44■■□□□ 1.18
LIG1-205ENST00000593425 MMP10P09238 476 aa22.43■■□□□ 1.18
LIG1-205ENST00000593425 MYH14Q7Z406 1995 aaKnown RBP22.43■■□□□ 1.18
LIG1-205ENST00000593425 PXDNLA1KZ92 1463 aa22.42■■□□□ 1.18
LIG1-205ENST00000593425 MORC1Q86VD1 984 aa22.42■■□□□ 1.18
LIG1-205ENST00000593425 RTCBQ9Y3I0 505 aaKnown RBP22.42■■□□□ 1.18
LIG1-205ENST00000593425 TJP1Q07157 1748 aa22.42■■□□□ 1.18
LIG1-205ENST00000593425 SCN11AQ9UI33 1791 aa22.41■■□□□ 1.18
LIG1-205ENST00000593425 CABP4P57796 275 aa22.41■■□□□ 1.18
LIG1-205ENST00000593425 AMOTQ4VCS5 1084 aa22.41■■□□□ 1.18
LIG1-205ENST00000593425 CNTNAP4Q9C0A0 1308 aa22.4■■□□□ 1.18
LIG1-205ENST00000593425 TRAPPC3LQ5T215 181 aa22.4■■□□□ 1.18
LIG1-205ENST00000593425 RC3H1Q5TC82 1133 aaKnown RBP22.39■■□□□ 1.17
LIG1-205ENST00000593425 ARHGEF1Q92888 912 aaKnown RBP22.39■■□□□ 1.17
LIG1-205ENST00000593425 C10orf71Q711Q0 1435 aa22.39■■□□□ 1.17
LIG1-205ENST00000593425 MTHFSP49914 203 aa22.38■■□□□ 1.17
LIG1-205ENST00000593425 SULT6B1Q6IMI4 303 aa22.38■■□□□ 1.17
LIG1-205ENST00000593425 ZNF526Q8TF50 670 aaPredicted RBP22.38■■□□□ 1.17
LIG1-205ENST00000593425 GPBP1L1Q9HC44 474 aaPredicted RBP22.38■■□□□ 1.17
LIG1-205ENST00000593425 ADRA2BP18089 450 aa22.37■■□□□ 1.17
LIG1-205ENST00000593425 BRCA1P38398 1863 aaKnown RBP22.37■■□□□ 1.17
LIG1-205ENST00000593425 VIRMAQ69YN4 1812 aaKnown RBP22.36■■□□□ 1.17
LIG1-205ENST00000593425 RPS6KA4O75676 772 aa22.36■■□□□ 1.17
LIG1-205ENST00000593425 GYS1P13807 737 aa22.36■■□□□ 1.17
LIG1-205ENST00000593425 IL13P35225 146 aa22.36■■□□□ 1.17
LIG1-205ENST00000593425 C1orf141Q5JVX7 400 aa22.36■■□□□ 1.17
LIG1-205ENST00000593425 NLGN1Q8N2Q7 840 aa22.36■■□□□ 1.17
LIG1-205ENST00000593425 KNSTRNQ9Y448 316 aa22.36■■□□□ 1.17
LIG1-205ENST00000593425 PTCD1O75127 700 aaKnown RBP22.35■■□□□ 1.17
LIG1-205ENST00000593425 NFATC2IPQ8NCF5 419 aa22.35■■□□□ 1.17
LIG1-205ENST00000593425 CCER1Q8TC90 406 aaPredicted RBP22.35■■□□□ 1.17
LIG1-205ENST00000593425 ADAMTS7Q9UKP4 1686 aa22.33■■□□□ 1.17
LIG1-205ENST00000593425 RFC4P35249 363 aa22.33■■□□□ 1.17
LIG1-205ENST00000593425 AMER1Q5JTC6 1135 aaPredicted RBP22.33■■□□□ 1.17
LIG1-205ENST00000593425 A0A0G2JLW4 131 aa22.32■■□□□ 1.16
LIG1-205ENST00000593425 CRKLP46109 303 aaKnown RBP22.32■■□□□ 1.16
LIG1-205ENST00000593425 TGFB2P61812 414 aa22.32■■□□□ 1.16
LIG1-205ENST00000593425 CCDC87Q9NVE4 849 aa22.31■■□□□ 1.16
LIG1-205ENST00000593425 BCS1LQ9Y276 419 aa22.31■■□□□ 1.16
LIG1-205ENST00000593425 SRP68Q9UHB9 627 aaKnown RBP22.3■■□□□ 1.16
LIG1-205ENST00000593425 KIF7Q2M1P5 1343 aa22.3■■□□□ 1.16
LIG1-205ENST00000593425 MRC1P22897 1456 aa22.29■■□□□ 1.16
LIG1-205ENST00000593425 DPEP1P16444 411 aa22.29■■□□□ 1.16
LIG1-205ENST00000593425 PARP3Q9Y6F1 533 aa22.29■■□□□ 1.16
LIG1-205ENST00000593425 AKAP4Q5JQC9 854 aa22.28■■□□□ 1.16
LIG1-205ENST00000593425 ARFGEF1Q9Y6D6 1849 aa22.28■■□□□ 1.16
LIG1-205ENST00000593425 USP42Q9H9J4 1324 aaKnown RBP22.28■■□□□ 1.16
LIG1-205ENST00000593425 FKBP8Q14318 412 aa22.27■■□□□ 1.16
LIG1-205ENST00000593425 KIF3CO14782 793 aa22.26■■□□□ 1.15
LIG1-205ENST00000593425 HMOX1P09601 288 aa22.26■■□□□ 1.15
LIG1-205ENST00000593425 INTS5Q6P9B9 1019 aaKnown RBP22.26■■□□□ 1.15
LIG1-205ENST00000593425 LGR6Q9HBX8 967 aa22.26■■□□□ 1.15
LIG1-205ENST00000593425 KCPQ6ZWJ8 1503 aa22.26■■□□□ 1.15
LIG1-205ENST00000593425 DDR1Q08345 913 aa22.25■■□□□ 1.15
LIG1-205ENST00000593425 SLC52A2Q9HAB3 445 aa22.25■■□□□ 1.15
LIG1-205ENST00000593425 FCHSD2O94868 740 aa22.24■■□□□ 1.15
LIG1-205ENST00000593425 KCNA3P22001 575 aa22.24■■□□□ 1.15
LIG1-205ENST00000593425 DNAJC10Q8IXB1 793 aa22.24■■□□□ 1.15
LIG1-205ENST00000593425 RNMTO43148 476 aaKnown RBP22.23■■□□□ 1.15
LIG1-205ENST00000593425 HSPA6P17066 643 aa22.23■■□□□ 1.15
LIG1-205ENST00000593425 ARHGAP27Q6ZUM4 889 aa22.23■■□□□ 1.15
LIG1-205ENST00000593425 UBR2Q8IWV8 1755 aa22.22■■□□□ 1.15
LIG1-205ENST00000593425 PER1O15534 1290 aaPredicted RBP22.22■■□□□ 1.15
LIG1-205ENST00000593425 SLC39A6Q13433 755 aa22.22■■□□□ 1.15
LIG1-205ENST00000593425 AFDNP55196 1824 aaKnown RBP22.21■■□□□ 1.15
LIG1-205ENST00000593425 SOS1Q07889 1333 aaPredicted RBP22.21■■□□□ 1.15
LIG1-205ENST00000593425 MTHFSDQ2M296 383 aaKnown RBP22.2■■□□□ 1.14
LIG1-205ENST00000593425 CC2D1BQ5T0F9 858 aaKnown RBP22.2■■□□□ 1.14
LIG1-205ENST00000593425 COL3A1P02461 1466 aaPredicted RBP22.2■■□□□ 1.14
LIG1-205ENST00000593425 POLRMTO00411 1230 aaKnown RBP22.19■■□□□ 1.14
LIG1-205ENST00000593425 USPL1Q5W0Q7 1092 aa22.19■■□□□ 1.14
LIG1-205ENST00000593425 CEP350Q5VT06 3117 aa22.18■■□□□ 1.14
LIG1-205ENST00000593425 NRXN2Q9P2S2 1712 aa22.18■■□□□ 1.14
LIG1-205ENST00000593425 DIAPH1O60610 1272 aaKnown RBP22.18■■□□□ 1.14
LIG1-205ENST00000593425 CYP19A1P11511 503 aaPredicted RBP22.18■■□□□ 1.14
LIG1-205ENST00000593425 TM4SF1P30408 202 aa22.18■■□□□ 1.14
LIG1-205ENST00000593425 PIM2Q9P1W9 311 aa22.18■■□□□ 1.14
LIG1-205ENST00000593425 COL15A1P39059 1388 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms