RNA–Protein interactions for RNA: ENST00000585042.5

VAPA-209, Transcript of VAMP associated protein A, humanhuman

TSL 4

Gene VAPA, Length 567 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-209ENST00000585042 LINC00116Q8NCU8 138 aa20.57■□□□□ 0.88
VAPA-209ENST00000585042 ATG3Q9NT62 314 aa20.57■□□□□ 0.88
VAPA-209ENST00000585042 GOLGB1Q14789 3259 aaKnown RBP20.56■□□□□ 0.88
VAPA-209ENST00000585042 ITPK1Q13572 414 aa20.55■□□□□ 0.88
VAPA-209ENST00000585042 MORC1Q86VD1 984 aa20.55■□□□□ 0.88
VAPA-209ENST00000585042 AMIGO3Q86WK7 504 aa20.55■□□□□ 0.88
VAPA-209ENST00000585042 PHF14O94880 888 aa20.54■□□□□ 0.88
VAPA-209ENST00000585042 GNPATO15228 680 aa20.53■□□□□ 0.88
VAPA-209ENST00000585042 RC3H1Q5TC82 1133 aaKnown RBP20.53■□□□□ 0.88
VAPA-209ENST00000585042 CCER1Q8TC90 406 aaPredicted RBP20.53■□□□□ 0.88
VAPA-209ENST00000585042 KNSTRNQ9Y448 316 aa20.53■□□□□ 0.88
VAPA-209ENST00000585042 ZNF831Q5JPB2 1677 aa20.52■□□□□ 0.88
VAPA-209ENST00000585042 GIGYF1O75420 1035 aaPredicted RBP20.5■□□□□ 0.87
VAPA-209ENST00000585042 TRAPPC3LQ5T215 181 aa20.5■□□□□ 0.87
VAPA-209ENST00000585042 ZNF530Q6P9A1 599 aaPredicted RBP20.5■□□□□ 0.87
VAPA-209ENST00000585042 RTCBQ9Y3I0 505 aaKnown RBP20.5■□□□□ 0.87
VAPA-209ENST00000585042 KDRP35968 1356 aa20.49■□□□□ 0.87
VAPA-209ENST00000585042 CABP4P57796 275 aa20.49■□□□□ 0.87
VAPA-209ENST00000585042 SMIM5Q71RC9 77 aa20.49■□□□□ 0.87
VAPA-209ENST00000585042 NLGN1Q8N2Q7 840 aa20.49■□□□□ 0.87
VAPA-209ENST00000585042 MTHFSP49914 203 aa20.48■□□□□ 0.87
VAPA-209ENST00000585042 C1orf141Q5JVX7 400 aa20.48■□□□□ 0.87
VAPA-209ENST00000585042 RBM42Q9BTD8 480 aaKnown RBP20.48■□□□□ 0.87
VAPA-209ENST00000585042 SLC4A9Q96Q91 983 aa20.47■□□□□ 0.87
VAPA-209ENST00000585042 CNTNAP4Q9C0A0 1308 aa20.47■□□□□ 0.87
VAPA-209ENST00000585042 RPS6KA4O75676 772 aa20.46■□□□□ 0.87
VAPA-209ENST00000585042 IL13P35225 146 aa20.46■□□□□ 0.87
VAPA-209ENST00000585042 SULT6B1Q6IMI4 303 aa20.45■□□□□ 0.86
VAPA-209ENST00000585042 KDM6AO15550 1401 aaPredicted RBP20.44■□□□□ 0.86
VAPA-209ENST00000585042 SENP3-EIF4A1A0A087X0R7 540 aa20.44■□□□□ 0.86
VAPA-209ENST00000585042 MMP10P09238 476 aa20.44■□□□□ 0.86
VAPA-209ENST00000585042 TGFB2P61812 414 aa20.44■□□□□ 0.86
VAPA-209ENST00000585042 AMER1Q5JTC6 1135 aaPredicted RBP20.44■□□□□ 0.86
VAPA-209ENST00000585042 ARHGEF1Q92888 912 aaKnown RBP20.44■□□□□ 0.86
VAPA-209ENST00000585042 AEBP1Q8IUX7 1158 aa20.43■□□□□ 0.86
VAPA-209ENST00000585042 NFATC2IPQ8NCF5 419 aa20.43■□□□□ 0.86
VAPA-209ENST00000585042 RFC4P35249 363 aa20.42■□□□□ 0.86
VAPA-209ENST00000585042 AKAP4Q5JQC9 854 aa20.41■□□□□ 0.86
VAPA-209ENST00000585042 ADCY9O60503 1353 aa20.4■□□□□ 0.86
VAPA-209ENST00000585042 GYS1P13807 737 aa20.4■□□□□ 0.86
VAPA-209ENST00000585042 COL5A3P25940 1745 aaPredicted RBP20.4■□□□□ 0.86
VAPA-209ENST00000585042 ATP10DQ9P241 1426 aa20.4■□□□□ 0.86
VAPA-209ENST00000585042 PTCD1O75127 700 aaKnown RBP20.39■□□□□ 0.85
VAPA-209ENST00000585042 GPBP1L1Q9HC44 474 aaPredicted RBP20.39■□□□□ 0.85
VAPA-209ENST00000585042 CCDC87Q9NVE4 849 aa20.39■□□□□ 0.85
VAPA-209ENST00000585042 KIF13BQ9NQT8 1826 aa20.39■□□□□ 0.85
VAPA-209ENST00000585042 KIF7Q2M1P5 1343 aa20.38■□□□□ 0.85
VAPA-209ENST00000585042 PER1O15534 1290 aaPredicted RBP20.38■□□□□ 0.85
VAPA-209ENST00000585042 PARP3Q9Y6F1 533 aa20.38■□□□□ 0.85
VAPA-209ENST00000585042 CRKLP46109 303 aaKnown RBP20.37■□□□□ 0.85
VAPA-209ENST00000585042 SLC52A2Q9HAB3 445 aa20.36■□□□□ 0.85
VAPA-209ENST00000585042 MYH14Q7Z406 1995 aaKnown RBP20.35■□□□□ 0.85
VAPA-209ENST00000585042 CICQ96RK0 1608 aaPredicted RBP20.35■□□□□ 0.85
VAPA-209ENST00000585042 SCN11AQ9UI33 1791 aa20.35■□□□□ 0.85
VAPA-209ENST00000585042 PXDNLA1KZ92 1463 aa20.35■□□□□ 0.85
VAPA-209ENST00000585042 C10orf71Q711Q0 1435 aa20.35■□□□□ 0.85
VAPA-209ENST00000585042 A0A0G2JLW4 131 aa20.33■□□□□ 0.85
VAPA-209ENST00000585042 DIAPH1O60610 1272 aaKnown RBP20.33■□□□□ 0.85
VAPA-209ENST00000585042 C4AP0C0L4 1744 aa20.33■□□□□ 0.84
VAPA-209ENST00000585042 USP42Q9H9J4 1324 aaKnown RBP20.32■□□□□ 0.84
VAPA-209ENST00000585042 RNMTO43148 476 aaKnown RBP20.32■□□□□ 0.84
VAPA-209ENST00000585042 INTS5Q6P9B9 1019 aaKnown RBP20.32■□□□□ 0.84
VAPA-209ENST00000585042 LGR6Q9HBX8 967 aa20.32■□□□□ 0.84
VAPA-209ENST00000585042 NPC1L1Q9UHC9 1359 aa20.32■□□□□ 0.84
VAPA-209ENST00000585042 WWC3Q9ULE0 1092 aa20.31■□□□□ 0.84
VAPA-209ENST00000585042 BCS1LQ9Y276 419 aa20.31■□□□□ 0.84
VAPA-209ENST00000585042 KIAA1551Q9HCM1 1747 aa20.3■□□□□ 0.84
VAPA-209ENST00000585042 DPEP1P16444 411 aa20.3■□□□□ 0.84
VAPA-209ENST00000585042 VSIG10Q8N0Z9 540 aa20.3■□□□□ 0.84
VAPA-209ENST00000585042 HMOX1P09601 288 aa20.29■□□□□ 0.84
VAPA-209ENST00000585042 N4BP2Q86UW6 1770 aaPredicted RBP20.29■□□□□ 0.84
VAPA-209ENST00000585042 TJP1Q07157 1748 aa20.28■□□□□ 0.84
VAPA-209ENST00000585042 ZPR1O75312 459 aa20.28■□□□□ 0.84
VAPA-209ENST00000585042 CYP19A1P11511 503 aaPredicted RBP20.28■□□□□ 0.84
VAPA-209ENST00000585042 KCNA3P22001 575 aa20.28■□□□□ 0.84
VAPA-209ENST00000585042 TM4SF1P30408 202 aa20.28■□□□□ 0.84
VAPA-209ENST00000585042 FKBP8Q14318 412 aa20.28■□□□□ 0.84
VAPA-209ENST00000585042 MTHFSDQ2M296 383 aaKnown RBP20.28■□□□□ 0.84
VAPA-209ENST00000585042 PIM2Q9P1W9 311 aa20.28■□□□□ 0.84
VAPA-209ENST00000585042 MRC1P22897 1456 aa20.28■□□□□ 0.84
VAPA-209ENST00000585042 FCHSD2O94868 740 aa20.27■□□□□ 0.84
VAPA-209ENST00000585042 CC2D1BQ5T0F9 858 aaKnown RBP20.27■□□□□ 0.84
VAPA-209ENST00000585042 ARHGAP27Q6ZUM4 889 aa20.27■□□□□ 0.84
VAPA-209ENST00000585042 DNAJC10Q8IXB1 793 aa20.27■□□□□ 0.84
VAPA-209ENST00000585042 SRP68Q9UHB9 627 aaKnown RBP20.27■□□□□ 0.84
VAPA-209ENST00000585042 ZNF526Q8TF50 670 aaPredicted RBP20.26■□□□□ 0.83
VAPA-209ENST00000585042 SOS1Q07889 1333 aaPredicted RBP20.26■□□□□ 0.83
VAPA-209ENST00000585042 ADAMTS7Q9UKP4 1686 aa20.26■□□□□ 0.83
VAPA-209ENST00000585042 POLRMTO00411 1230 aaKnown RBP20.24■□□□□ 0.83
VAPA-209ENST00000585042 KIF3CO14782 793 aa20.24■□□□□ 0.83
VAPA-209ENST00000585042 HSPA6P17066 643 aa20.24■□□□□ 0.83
VAPA-209ENST00000585042 DDR1Q08345 913 aa20.24■□□□□ 0.83
VAPA-209ENST00000585042 SLC39A6Q13433 755 aa20.24■□□□□ 0.83
VAPA-209ENST00000585042 NARFQ9UHQ1 456 aa20.24■□□□□ 0.83
VAPA-209ENST00000585042 BRCA1P38398 1863 aaKnown RBP20.24■□□□□ 0.83
VAPA-209ENST00000585042 DALRD3Q5D0E6 543 aaKnown RBP20.23■□□□□ 0.83
VAPA-209ENST00000585042 USPL1Q5W0Q7 1092 aa20.23■□□□□ 0.83
VAPA-209ENST00000585042 GAS2L2Q8NHY3 880 aa20.22■□□□□ 0.83
VAPA-209ENST00000585042 TEX13AQ9BXU3 409 aaPredicted RBP20.22■□□□□ 0.83
VAPA-209ENST00000585042 KCPQ6ZWJ8 1503 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms