RNA–Protein interactions for RNA: ENST00000578299.1

PTP4A1-204, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 2 BASIC

Gene PTP4A1, Length 135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-204ENST00000578299 GPC1P35052 558 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 PDE4CQ08493 712 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 C6orf118Q5T5N4 469 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 TRIM46Q7Z4K8 759 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 CNKSR1Q969H4 720 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 PURBQ96QR8 312 aaKnown RBP4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 ATP13A2Q9NQ11 1180 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 RAB6BQ9NRW1 208 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 ZMIZ1Q9ULJ6 1067 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 HRH3Q9Y5N1 445 aa4.24□□□□□ -1.73
PTP4A1-204ENST00000578299 SFI1A8K8P3 1242 aa4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 STAU1O95793 577 aaKnown RBP4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 RNF144AP50876 292 aaPredicted RBP4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 SMTNP53814 917 aa4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 SWI5Q1ZZU3 235 aa4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 STK32AQ8WU08 396 aa4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 ZFP42Q96MM3 310 aa4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 INSM2Q96T92 566 aaPredicted RBP4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 SENP2Q9HC62 589 aa4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 POLMQ9NP87 494 aaPredicted RBP4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 SERTAD1Q9UHV2 236 aa4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 USTQ9Y2C2 406 aa4.23□□□□□ -1.73
PTP4A1-204ENST00000578299 A6NJY4 79 aa4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 TTLL8A6PVC2 850 aa4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 CDK2AP1O14519 115 aa4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 GTF2E1P29083 439 aaPredicted RBP4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 CTSOP43234 321 aaPredicted RBP4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 CENPCQ03188 943 aa4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 TLR1Q15399 786 aa4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 RETREG2Q8NC44 543 aa4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 KIFC2Q96AC6 838 aa4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 ZSCAN10Q96SZ4 725 aaPredicted RBP4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 DACH1Q9UI36 760 aa4.22□□□□□ -1.73
PTP4A1-204ENST00000578299 SOS2Q07890 1332 aaPredicted RBP4.21□□□□□ -1.73
PTP4A1-204ENST00000578299 EPHA4P54764 986 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 FAM69CQ0P6D2 419 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 MTFR1Q15390 333 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 SLC27A3Q5K4L6 730 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 TMEM164Q5U3C3 297 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 FOXD4L5Q5VV16 416 aaPredicted RBP4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 PPARGC1BQ86YN6 1023 aaKnown RBP4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 TNS4Q8IZW8 715 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 NBPF15Q8N660 670 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 TSEN2Q8NCE0 465 aaKnown RBP4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 RNF217Q8TC41 542 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 CLP1Q92989 425 aaKnown RBP4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 HINFPQ9BQA5 517 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 FHDC1Q9C0D6 1143 aaPredicted RBP4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 GRIP2Q9C0E4 1043 aa4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 SCHIP1Q9P0W5 487 aaPredicted RBP4.21□□□□□ -1.74
PTP4A1-204ENST00000578299 TMEM88BA6NKF7 163 aa4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 LCE2BO14633 110 aa4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 FOXK2Q01167 660 aa4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 GNASQ5JWF2 1037 aa4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 TMEM214Q6NUQ4 689 aaKnown RBP4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 GAS2L2Q8NHY3 880 aa4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 TRIM47Q96LD4 638 aa4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 GMPR2Q9P2T1 348 aaKnown RBP4.2□□□□□ -1.74
PTP4A1-204ENST00000578299 FIGNL2A6NMB9 653 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 SPATA31C2B4DYI2 1134 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 MAN1A2O60476 641 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 IGFBP4P22692 258 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 WDR44Q5JSH3 913 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 LYSMD3Q7Z3D4 306 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 SLC9A9Q8IVB4 645 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 HOMEZQ8IX15 550 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 RHBDD1Q8TEB9 315 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 NIFKQ9BYG3 293 aaKnown RBP4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 TSPAN10Q9H1Z9 355 aaPredicted RBP4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 DNMT3LQ9UJW3 386 aa4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 IQSEC3Q9UPP2 1182 aaPredicted RBP4.19□□□□□ -1.74
PTP4A1-204ENST00000578299 WEE1P30291 646 aa4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 PSMA6P60900 246 aaKnown RBP4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 B4GALNT3Q6L9W6 998 aa4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 NBPF10Q6P3W6 841 aaKnown RBP4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 TAS1R3Q7RTX0 852 aa4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 PRICKLE2Q7Z3G6 844 aa4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 STAG2Q8N3U4 1231 aa4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 SCG3Q8WXD2 468 aaKnown RBP4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 CHMP3Q9Y3E7 222 aa4.18□□□□□ -1.74
PTP4A1-204ENST00000578299 ATAD2Q6PL18 1390 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 C11orf95C9JLR9 678 aaPredicted RBP4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 FOXO3O43524 673 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 C21orf2O43822 256 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 PPP1R12BO60237 982 aaPredicted RBP4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 PRMT3O60678 531 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 PDIA4P13667 645 aaKnown RBP4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 SNRPBP14678 240 aaKnown RBP4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 ATP2B4P23634 1241 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 POU4F2Q12837 409 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 TEAD4Q15561 434 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 OCLNQ16625 522 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 C4orf17Q53FE4 359 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 TBCELQ5QJ74 424 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 ZNF295-AS1Q8N0V1 137 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 PRIMPOLQ96LW4 560 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 TRAIPQ9BWF2 469 aa4.17□□□□□ -1.74
PTP4A1-204ENST00000578299 CABP1Q9NZU7 370 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms