RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	BTBD6	Q96KE9	485 aa		5.3	□□□□□ -1.56
SPG11-223	ENST00000560858	GPAM	Q9HCL2	828 aa		5.3	□□□□□ -1.56
SPG11-223	ENST00000560858	DOC2B	Q14184	412 aa		5.29	□□□□□ -1.56
SPG11-223	ENST00000560858	EFHC2	Q5JST6	749 aa		5.29	□□□□□ -1.56
SPG11-223	ENST00000560858	GGA1	Q9UJY5	639 aa		5.29	□□□□□ -1.56
SPG11-223	ENST00000560858	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	5.29	□□□□□ -1.56
SPG11-223	ENST00000560858	PCDHB9	Q9Y5E1	797 aa		5.29	□□□□□ -1.56
SPG11-223	ENST00000560858	EPX	P11678	715 aa		5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	HOXB4	P17483	251 aa	Predicted RBP	5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	CHRNA4	P43681	627 aa		5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	MCCD1	P59942	119 aa	Predicted RBP	5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	SLCO4C1	Q6ZQN7	724 aa		5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	KRTAP1-3	Q8IUG1	177 aa		5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	PROCA1	Q8NCQ7	364 aa	Predicted RBP	5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	ZNF592	Q92610	1267 aa		5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	ARHGEF10L	Q9HCE6	1279 aa		5.28	□□□□□ -1.56
SPG11-223	ENST00000560858	SCO2	A0A1W2PP80	73 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	ZBBX	A8MT70	800 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	GNRH1	P01148	92 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	GATA4	P43694	442 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	PHKA2	P46019	1235 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	SH3D19	Q5HYK7	790 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	GNAS	Q5JWF2	1037 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	CNKSR1	Q969H4	720 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	ESYT1	Q9BSJ8	1104 aa		5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	HMX1	Q9NP08	348 aa	Predicted RBP	5.27	□□□□□ -1.57
SPG11-223	ENST00000560858	THBS1	P07996	1170 aa		5.26	□□□□□ -1.57
SPG11-223	ENST00000560858	USP17L8	P0C7I0	530 aa		5.26	□□□□□ -1.57
SPG11-223	ENST00000560858	FGFR3	P22607	806 aa		5.26	□□□□□ -1.57
SPG11-223	ENST00000560858	CENPC	Q03188	943 aa		5.26	□□□□□ -1.57
SPG11-223	ENST00000560858	TMEM214	Q6NUQ4	689 aa	Known RBP	5.26	□□□□□ -1.57
SPG11-223	ENST00000560858	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	5.26	□□□□□ -1.57
SPG11-223	ENST00000560858	C2CD2L	O14523	706 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	ARAF	P10398	606 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	ITGB7	P26010	798 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	SCTR	P47872	440 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	DGKG	P49619	791 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	CTBS	Q01459	385 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	FBXO31	Q5XUX0	539 aa	Predicted RBP	5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	RNF135	Q8IUD6	432 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	ABHD17A	Q96GS6	310 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	OSBPL3	Q9H4L5	887 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	RUBCNL	Q9H714	662 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	SLC24A3	Q9HC58	644 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	PCDHB11	Q9Y5F2	797 aa		5.25	□□□□□ -1.57
SPG11-223	ENST00000560858	NEURL1B	A8MQ27	555 aa		5.24	□□□□□ -1.57
SPG11-223	ENST00000560858	TRAK2	O60296	914 aa		5.24	□□□□□ -1.57
SPG11-223	ENST00000560858	UBAP2L	Q14157	1087 aa	Known RBP	5.24	□□□□□ -1.57
SPG11-223	ENST00000560858	FIGNL1	Q6PIW4	674 aa		5.24	□□□□□ -1.57
SPG11-223	ENST00000560858	NBPF11	Q86T75	865 aa		5.24	□□□□□ -1.57
SPG11-223	ENST00000560858	RAB6B	Q9NRW1	208 aa		5.24	□□□□□ -1.57
SPG11-223	ENST00000560858	ZNF330	Q9Y3S2	320 aa	Predicted RBP	5.24	□□□□□ -1.57
SPG11-223	ENST00000560858	BNIP3L	O60238	219 aa		5.23	□□□□□ -1.57
SPG11-223	ENST00000560858	SPATA31C1	P0DKV0	1188 aa		5.23	□□□□□ -1.57
SPG11-223	ENST00000560858	MSX1	P28360	303 aa		5.23	□□□□□ -1.57
SPG11-223	ENST00000560858	LCE3B	Q5TA77	95 aa		5.23	□□□□□ -1.57
SPG11-223	ENST00000560858	CHSY3	Q70JA7	882 aa		5.23	□□□□□ -1.57
SPG11-223	ENST00000560858	DDRGK1	Q96HY6	314 aa		5.23	□□□□□ -1.57
SPG11-223	ENST00000560858	ZFP64	Q9NPA5	681 aa		5.23	□□□□□ -1.57
SPG11-223	ENST00000560858	SPDYE3	A6NKU9	549 aa		5.22	□□□□□ -1.57
SPG11-223	ENST00000560858	MYC	P01106	439 aa	Predicted RBP	5.22	□□□□□ -1.57
SPG11-223	ENST00000560858	FBXO45	P0C2W1	286 aa		5.22	□□□□□ -1.57
SPG11-223	ENST00000560858	ADH6	P28332	368 aa		5.22	□□□□□ -1.57
SPG11-223	ENST00000560858	ESCO1	Q5FWF5	840 aa		5.22	□□□□□ -1.57
SPG11-223	ENST00000560858	XAGE2	Q96GT9	111 aa		5.22	□□□□□ -1.57
SPG11-223	ENST00000560858	NDFIP2	Q9NV92	336 aa		5.22	□□□□□ -1.57
SPG11-223	ENST00000560858	PCDHGC4	Q9Y5F7	938 aa		5.22	□□□□□ -1.57
SPG11-223	ENST00000560858	BTBD11	A6QL63	1104 aa		5.21	□□□□□ -1.58
SPG11-223	ENST00000560858	IL2RA	P01589	272 aa		5.21	□□□□□ -1.58
SPG11-223	ENST00000560858	C4orf17	Q53FE4	359 aa		5.21	□□□□□ -1.58
SPG11-223	ENST00000560858	ARTN	Q5T4W7	220 aa		5.21	□□□□□ -1.58
SPG11-223	ENST00000560858	PLVAP	Q9BX97	442 aa		5.21	□□□□□ -1.58
SPG11-223	ENST00000560858	TRIM34	Q9BYJ4	488 aa		5.21	□□□□□ -1.58
SPG11-223	ENST00000560858	CRISPLD1	Q9H336	500 aa		5.21	□□□□□ -1.58
SPG11-223	ENST00000560858	RFC5	P40937	340 aa		5.2	□□□□□ -1.58
SPG11-223	ENST00000560858	RSPO4	Q2I0M5	234 aa	Predicted RBP	5.2	□□□□□ -1.58
SPG11-223	ENST00000560858	TMEM259	Q4ZIN3	620 aa		5.2	□□□□□ -1.58
SPG11-223	ENST00000560858	ZCCHC2	Q9C0B9	1178 aa	Known RBP	5.2	□□□□□ -1.58
SPG11-223	ENST00000560858	AVEN	Q9NQS1	362 aa	Predicted RBP	5.2	□□□□□ -1.58
SPG11-223	ENST00000560858	PRRT3	Q5FWE3	981 aa		5.19	□□□□□ -1.58
SPG11-223	ENST00000560858	NKAPL	Q5M9Q1	402 aa		5.19	□□□□□ -1.58
SPG11-223	ENST00000560858	TBC1D9	Q6ZT07	1266 aa		5.19	□□□□□ -1.58
SPG11-223	ENST00000560858	NLRP8	Q86W28	1048 aa		5.19	□□□□□ -1.58
SPG11-223	ENST00000560858	RHBDD1	Q8TEB9	315 aa		5.19	□□□□□ -1.58
SPG11-223	ENST00000560858	HRH3	Q9Y5N1	445 aa		5.19	□□□□□ -1.58
SPG11-223	ENST00000560858	ATXN7	O15265	892 aa	Predicted RBP	5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	APBA3	O96018	575 aa		5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	ALAS2	P22557	587 aa		5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	NR1H3	Q13133	447 aa		5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	FAM182B	Q5T319	152 aa		5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	PPARGC1B	Q86YN6	1023 aa	Known RBP	5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	C1orf216	Q8TAB5	229 aa		5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	TRIM11	Q96F44	468 aa		5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	KRTAP4-12	Q9BQ66	201 aa		5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	FHDC1	Q9C0D6	1143 aa	Predicted RBP	5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	PRR12	Q9ULL5	1215 aa		5.18	□□□□□ -1.58
SPG11-223	ENST00000560858	FAM117A	Q9C073	453 aa		5.17	□□□□□ -1.58
SPG11-223	ENST00000560858	TPSG1	Q9NRR2	321 aa		5.17	□□□□□ -1.58
SPG11-223	ENST00000560858	DYRK3	O43781	588 aa		5.16	□□□□□ -1.58

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