RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SLF2Q8IX21 1173 aa7.02□□□□□ -1.29
LDLR-209ENST00000558528 CARD11Q9BXL7 1154 aa7.02□□□□□ -1.29
LDLR-209ENST00000558528 AFF2P51816 1311 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 TMEM94Q12767 1356 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 GCGRP47871 477 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 NBPF8Q3BBV2 869 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 GRIPAP1Q4V328 841 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 CDCA8Q53HL2 280 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 CCDC125Q86Z20 511 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 ZNF592Q92610 1267 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 C8orf37Q96NL8 207 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 MROH1Q8NDA8 1641 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 SPATA31E1Q6ZUB1 1445 aa7.01□□□□□ -1.29
LDLR-209ENST00000558528 NWD1Q149M9 1564 aa7□□□□□ -1.29
LDLR-209ENST00000558528 ROCK2O75116 1388 aaKnown RBP7□□□□□ -1.29
LDLR-209ENST00000558528 TMEM164Q5U3C3 297 aa7□□□□□ -1.29
LDLR-209ENST00000558528 DIEXFQ68CQ4 756 aaKnown RBP7□□□□□ -1.29
LDLR-209ENST00000558528 TBC1D9Q6ZT07 1266 aa7□□□□□ -1.29
LDLR-209ENST00000558528 NUDT18Q6ZVK8 323 aa7□□□□□ -1.29
LDLR-209ENST00000558528 PACS2Q86VP3 889 aa7□□□□□ -1.29
LDLR-209ENST00000558528 PLEKHM2Q8IWE5 1019 aa7□□□□□ -1.29
LDLR-209ENST00000558528 BCL2L13Q9BXK5 485 aa7□□□□□ -1.29
LDLR-209ENST00000558528 ADAM33Q9BZ11 813 aa7□□□□□ -1.29
LDLR-209ENST00000558528 NOVA2Q9UNW9 492 aaKnown RBP7□□□□□ -1.29
LDLR-209ENST00000558528 FAM196BA6NMK8 535 aa6.99□□□□□ -1.29
LDLR-209ENST00000558528 TCF3P15923 654 aa6.99□□□□□ -1.29
LDLR-209ENST00000558528 ZNF16P17020 682 aaPredicted RBP6.99□□□□□ -1.29
LDLR-209ENST00000558528 VAMP1P23763 118 aa6.99□□□□□ -1.29
LDLR-209ENST00000558528 PELP1Q8IZL8 1130 aaKnown RBP6.99□□□□□ -1.29
LDLR-209ENST00000558528 TSC1Q92574 1164 aa6.99□□□□□ -1.29
LDLR-209ENST00000558528 KIAA1522Q9P206 1035 aaPredicted RBP6.99□□□□□ -1.29
LDLR-209ENST00000558528 AHDC1Q5TGY3 1603 aaPredicted RBP6.98□□□□□ -1.29
LDLR-209ENST00000558528 PSDA5PKW4 1024 aaPredicted RBP6.98□□□□□ -1.29
LDLR-209ENST00000558528 SOWAHDA6NJG2 315 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 PPP1R3GB7ZBB8 358 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 HSPA5P11021 654 aaKnown RBP6.98□□□□□ -1.29
LDLR-209ENST00000558528 SSFA2P28290 1259 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 LRRN4Q8WUT4 740 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 TATDN2Q93075 761 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 C14orf93Q9H972 538 aaKnown RBP6.98□□□□□ -1.29
LDLR-209ENST00000558528 QTRT2Q9H974 415 aaKnown RBP6.98□□□□□ -1.29
LDLR-209ENST00000558528 SLAIN2Q9P270 581 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 PNMA3Q9UL41 463 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 ZMIZ1Q9ULJ6 1067 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 EID1Q9Y6B2 187 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 ZFYVE9O95405 1425 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 PRAG1Q86YV5 1406 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 ERVK-7P63135 1459 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 BCL9LQ86UU0 1499 aa6.98□□□□□ -1.29
LDLR-209ENST00000558528 SCAF11Q99590 1463 aaKnown RBP6.98□□□□□ -1.29
LDLR-209ENST00000558528 EIF3AQ14152 1382 aaKnown RBP6.97□□□□□ -1.29
LDLR-209ENST00000558528 GPRASP1Q5JY77 1395 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 E9PCH4 1651 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 MARSP56192 900 aaKnown RBP6.97□□□□□ -1.29
LDLR-209ENST00000558528 NR1H3Q13133 447 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 DIP2AQ14689 1571 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 CLP1Q92989 425 aaKnown RBP6.97□□□□□ -1.29
LDLR-209ENST00000558528 DRC1Q96MC2 740 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 FAM198AQ9UFP1 575 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 PCDHGC3Q9UN70 934 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 MYOM2P54296 1465 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 RALGAPBQ86X10 1494 aa6.97□□□□□ -1.29
LDLR-209ENST00000558528 SENP3-EIF4A1A0A087X0R7 540 aa6.96□□□□□ -1.3
LDLR-209ENST00000558528 LZTS3O60299 673 aaPredicted RBP6.96□□□□□ -1.3
LDLR-209ENST00000558528 SLC4A3P48751 1232 aa6.96□□□□□ -1.3
LDLR-209ENST00000558528 TMF1P82094 1093 aa6.96□□□□□ -1.3
LDLR-209ENST00000558528 FAM177A1Q8N128 213 aaPredicted RBP6.96□□□□□ -1.3
LDLR-209ENST00000558528 STK32AQ8WU08 396 aa6.96□□□□□ -1.3
LDLR-209ENST00000558528 SREK1Q8WXA9 508 aaKnown RBP6.96□□□□□ -1.3
LDLR-209ENST00000558528 SLC39A7Q92504 469 aa6.96□□□□□ -1.3
LDLR-209ENST00000558528 USP47Q96K76 1375 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 USP17L3A6NCW0 530 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 USP17L4A6NCW7 530 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 TRIM6-TRIM34B2RNG4 842 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 PPP4R3BQ5MIZ7 849 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 PHLDB3Q6NSJ2 640 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 LARP1Q6PKG0 1096 aaKnown RBP6.95□□□□□ -1.3
LDLR-209ENST00000558528 USP17L2Q6R6M4 530 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 USP17L1Q7RTZ2 530 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 NGLY1Q96IV0 654 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 BCL2L12Q9HB09 334 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 TSKSQ9UJT2 592 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 ARHGAP23Q9P227 1491 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 ADGRF5Q8IZF2 1346 aa6.95□□□□□ -1.3
LDLR-209ENST00000558528 SPHKAPQ2M3C7 1700 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L15C9J2P7 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L10C9JJH3 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L13C9JLJ4 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L12C9JPN9 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L11C9JVI0 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L21D6R901 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L18D6R9N7 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L22D6RA61 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L17D6RBQ6 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L19D6RCP7 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 CFAP99D6REC4 459 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L20D6RJB6 530 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 ATP5J2-PTCD1G3V325 749 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 C6orf229H3BNL8 230 aa6.94□□□□□ -1.3
LDLR-209ENST00000558528 USP17L24Q0WX57 530 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms