RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 LARP1Q6PKG0 1096 aaKnown RBP6.85□□□□□ -1.31
SPG11-206ENST00000558093 TAS1R3Q7RTX0 852 aa6.85□□□□□ -1.31
SPG11-206ENST00000558093 CCDC155Q8N6L0 562 aa6.85□□□□□ -1.31
SPG11-206ENST00000558093 GRIP2Q9C0E4 1043 aa6.85□□□□□ -1.31
SPG11-206ENST00000558093 H3BM21 787 aa6.84□□□□□ -1.31
SPG11-206ENST00000558093 WASLO00401 505 aaPredicted RBP6.84□□□□□ -1.31
SPG11-206ENST00000558093 RFX1P22670 979 aa6.84□□□□□ -1.31
SPG11-206ENST00000558093 CLDN10P78369 228 aa6.84□□□□□ -1.31
SPG11-206ENST00000558093 CCDC102BQ68D86 513 aa6.84□□□□□ -1.31
SPG11-206ENST00000558093 NBPF10Q6P3W6 841 aaKnown RBP6.84□□□□□ -1.31
SPG11-206ENST00000558093 NBPF15Q8N660 670 aa6.84□□□□□ -1.31
SPG11-206ENST00000558093 IRF7Q92985 503 aa6.84□□□□□ -1.31
SPG11-206ENST00000558093 CDC14CA4D256 554 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 SLC35F4A4IF30 521 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 TMEM229AB2RXF0 380 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 PHKA2P46019 1235 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 NFX1Q12986 1120 aaKnown RBP6.83□□□□□ -1.32
SPG11-206ENST00000558093 LARGE2Q8N3Y3 721 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.83□□□□□ -1.32
SPG11-206ENST00000558093 RHBDD1Q8TEB9 315 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 GAS2L1Q99501 681 aaPredicted RBP6.83□□□□□ -1.32
SPG11-206ENST00000558093 FHDC1Q9C0D6 1143 aaPredicted RBP6.83□□□□□ -1.32
SPG11-206ENST00000558093 VRTNQ9H8Y1 702 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 TIMMDC1Q9NPL8 285 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 ZNF358Q9NW07 568 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 KIAA1024Q9UPX6 916 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 HRH3Q9Y5N1 445 aa6.83□□□□□ -1.32
SPG11-206ENST00000558093 SPATA31C2B4DYI2 1134 aa6.82□□□□□ -1.32
SPG11-206ENST00000558093 SMTNP53814 917 aa6.82□□□□□ -1.32
SPG11-206ENST00000558093 CFAP70Q5T0N1 1121 aa6.82□□□□□ -1.32
SPG11-206ENST00000558093 TREML4Q6UXN2 200 aa6.82□□□□□ -1.32
SPG11-206ENST00000558093 RIPOR1Q6ZS17 1223 aa6.82□□□□□ -1.32
SPG11-206ENST00000558093 SENP3-EIF4A1A0A087X0R7 540 aa6.81□□□□□ -1.32
SPG11-206ENST00000558093 A6NJY4 79 aa6.81□□□□□ -1.32
SPG11-206ENST00000558093 ITGA6P23229 1130 aa6.81□□□□□ -1.32
SPG11-206ENST00000558093 PLA2G4AP47712 749 aa6.81□□□□□ -1.32
SPG11-206ENST00000558093 C4orf17Q53FE4 359 aa6.81□□□□□ -1.32
SPG11-206ENST00000558093 WDR44Q5JSH3 913 aa6.81□□□□□ -1.32
SPG11-206ENST00000558093 PPARGC1BQ86YN6 1023 aaKnown RBP6.81□□□□□ -1.32
SPG11-206ENST00000558093 SERPINA10Q9UK55 444 aa6.81□□□□□ -1.32
SPG11-206ENST00000558093 USP17L15C9J2P7 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L10C9JJH3 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L13C9JLJ4 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L12C9JPN9 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L11C9JVI0 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L21D6R901 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L18D6R9N7 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L22D6RA61 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L17D6RBQ6 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L19D6RCP7 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L20D6RJB6 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 USP17L24Q0WX57 530 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 CDCA8Q53HL2 280 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 SIX5Q8N196 739 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 NIFKQ9BYG3 293 aaKnown RBP6.8□□□□□ -1.32
SPG11-206ENST00000558093 GPAMQ9HCL2 828 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 CABP1Q9NZU7 370 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 DYRK1BQ9Y463 629 aa6.8□□□□□ -1.32
SPG11-206ENST00000558093 A0A1B0GTH6 734 aa6.79□□□□□ -1.32
SPG11-206ENST00000558093 FAM196BA6NMK8 535 aa6.79□□□□□ -1.32
SPG11-206ENST00000558093 ZBTB7BO15156 539 aaPredicted RBP6.79□□□□□ -1.32
SPG11-206ENST00000558093 CRTC2Q53ET0 693 aaPredicted RBP6.79□□□□□ -1.32
SPG11-206ENST00000558093 CCDC82Q8N4S0 544 aa6.79□□□□□ -1.32
SPG11-206ENST00000558093 SLC4A9Q96Q91 983 aa6.79□□□□□ -1.32
SPG11-206ENST00000558093 ERBB4Q15303 1308 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 SFI1A8K8P3 1242 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 CSB-PGBD3P0DP91 1061 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 SEC13P55735 322 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 DPYDQ12882 1025 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 MTFR1Q15390 333 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 NBPF1Q3BBV0 1214 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 KANK4Q5T7N3 995 aaPredicted RBP6.78□□□□□ -1.32
SPG11-206ENST00000558093 SV2AQ7L0J3 742 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 ANKMY2Q8IV38 441 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 SLC9A9Q8IVB4 645 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 TNS4Q8IZW8 715 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 PGBD3Q8N328 593 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 AIDAQ96BJ3 306 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 CHMP3Q9Y3E7 222 aa6.78□□□□□ -1.32
SPG11-206ENST00000558093 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.77□□□□□ -1.33
SPG11-206ENST00000558093 H7C1W4 665 aa6.77□□□□□ -1.33
SPG11-206ENST00000558093 CDK2AP1O14519 115 aa6.77□□□□□ -1.33
SPG11-206ENST00000558093 F11P03951 625 aa6.77□□□□□ -1.33
SPG11-206ENST00000558093 PTK7Q13308 1070 aa6.77□□□□□ -1.33
SPG11-206ENST00000558093 VWA5B2Q8N398 1253 aa6.77□□□□□ -1.33
SPG11-206ENST00000558093 TSEN2Q8NCE0 465 aaKnown RBP6.77□□□□□ -1.33
SPG11-206ENST00000558093 SCHIP1Q9P0W5 487 aaPredicted RBP6.77□□□□□ -1.33
SPG11-206ENST00000558093 TIMELESSQ9UNS1 1208 aa6.77□□□□□ -1.33
SPG11-206ENST00000558093 M0R2N6 131 aa6.76□□□□□ -1.33
SPG11-206ENST00000558093 VSIG8P0DPA2 414 aa6.76□□□□□ -1.33
SPG11-206ENST00000558093 TATP17735 454 aaPredicted RBP6.76□□□□□ -1.33
SPG11-206ENST00000558093 GMPRP36959 345 aa6.76□□□□□ -1.33
SPG11-206ENST00000558093 TBCELQ5QJ74 424 aa6.76□□□□□ -1.33
SPG11-206ENST00000558093 FOXR1Q6PIV2 292 aa6.76□□□□□ -1.33
SPG11-206ENST00000558093 ZNF837Q96EG3 531 aaPredicted RBP6.76□□□□□ -1.33
SPG11-206ENST00000558093 HINFPQ9BQA5 517 aa6.76□□□□□ -1.33
SPG11-206ENST00000558093 ZNF232Q9UNY5 417 aa6.76□□□□□ -1.33
SPG11-206ENST00000558093 USP3Q9Y6I4 520 aa6.76□□□□□ -1.33
SPG11-206ENST00000558093 MSX1P28360 303 aa6.75□□□□□ -1.33
SPG11-206ENST00000558093 EPHA4P54764 986 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms