RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 PROCP04070 461 aa9.48□□□□□ -0.89
VPS29-210ENST00000552130 FOXR1Q6PIV2 292 aa9.48□□□□□ -0.89
VPS29-210ENST00000552130 PROSER2Q86WR7 435 aaPredicted RBP9.48□□□□□ -0.89
VPS29-210ENST00000552130 FAM177A1Q8N128 213 aaPredicted RBP9.48□□□□□ -0.89
VPS29-210ENST00000552130 BEND7Q8N7W2 519 aaPredicted RBP9.48□□□□□ -0.89
VPS29-210ENST00000552130 ZBBXA8MT70 800 aa9.47□□□□□ -0.89
VPS29-210ENST00000552130 SPATA31C2B4DYI2 1134 aa9.47□□□□□ -0.89
VPS29-210ENST00000552130 WDR44Q5JSH3 913 aa9.47□□□□□ -0.89
VPS29-210ENST00000552130 GTPBP3Q969Y2 492 aaKnown RBP9.47□□□□□ -0.89
VPS29-210ENST00000552130 ATP1B4Q9UN42 357 aaPredicted RBP9.47□□□□□ -0.89
VPS29-210ENST00000552130 POU4F2Q12837 409 aa9.46□□□□□ -0.9
VPS29-210ENST00000552130 CC2D2BQ6DHV5 1058 aa9.46□□□□□ -0.9
VPS29-210ENST00000552130 NBPF10Q6P3W6 841 aaKnown RBP9.46□□□□□ -0.9
VPS29-210ENST00000552130 NBPF15Q8N660 670 aa9.46□□□□□ -0.9
VPS29-210ENST00000552130 GJD4Q96KN9 370 aaPredicted RBP9.46□□□□□ -0.9
VPS29-210ENST00000552130 MEN1O00255 615 aa9.45□□□□□ -0.9
VPS29-210ENST00000552130 FBXO45P0C2W1 286 aa9.45□□□□□ -0.9
VPS29-210ENST00000552130 CLN3Q13286 438 aa9.45□□□□□ -0.9
VPS29-210ENST00000552130 RIPOR1Q6ZS17 1223 aa9.45□□□□□ -0.9
VPS29-210ENST00000552130 PATL2C9JE40 543 aaKnown RBP9.44□□□□□ -0.9
VPS29-210ENST00000552130 OIP5O43482 229 aa9.44□□□□□ -0.9
VPS29-210ENST00000552130 THBS1P07996 1170 aa9.44□□□□□ -0.9
VPS29-210ENST00000552130 AMOTL2Q9Y2J4 779 aa9.44□□□□□ -0.9
VPS29-210ENST00000552130 BRD2P25440 801 aaKnown RBP9.43□□□□□ -0.9
VPS29-210ENST00000552130 MCM6Q14566 821 aa9.43□□□□□ -0.9
VPS29-210ENST00000552130 XP32Q5T750 250 aa9.43□□□□□ -0.9
VPS29-210ENST00000552130 NEDD1Q8NHV4 660 aa9.43□□□□□ -0.9
VPS29-210ENST00000552130 TRERF1Q96PN7 1200 aa9.43□□□□□ -0.9
VPS29-210ENST00000552130 GOPCQ9HD26 462 aa9.43□□□□□ -0.9
VPS29-210ENST00000552130 PCDHB9Q9Y5E1 797 aa9.43□□□□□ -0.9
VPS29-210ENST00000552130 SCTRP47872 440 aa9.42□□□□□ -0.9
VPS29-210ENST00000552130 PODNQ7Z5L7 613 aa9.42□□□□□ -0.9
VPS29-210ENST00000552130 GAS2L1Q99501 681 aaPredicted RBP9.42□□□□□ -0.9
VPS29-210ENST00000552130 POLR3GLQ9BT43 218 aa9.42□□□□□ -0.9
VPS29-210ENST00000552130 MX2P20592 715 aa9.41□□□□□ -0.9
VPS29-210ENST00000552130 TMEM259Q4ZIN3 620 aa9.41□□□□□ -0.9
VPS29-210ENST00000552130 SLC27A3Q5K4L6 730 aa9.41□□□□□ -0.9
VPS29-210ENST00000552130 RNF20Q5VTR2 975 aa9.41□□□□□ -0.9
VPS29-210ENST00000552130 OSBPL3Q9H4L5 887 aa9.41□□□□□ -0.9
VPS29-210ENST00000552130 F11P03951 625 aa9.4□□□□□ -0.9
VPS29-210ENST00000552130 CYP2U1Q7Z449 544 aa9.4□□□□□ -0.9
VPS29-210ENST00000552130 DHX37Q8IY37 1157 aaKnown RBP9.4□□□□□ -0.9
VPS29-210ENST00000552130 FNBP4Q8N3X1 1017 aaPredicted RBP9.4□□□□□ -0.9
VPS29-210ENST00000552130 NLRP3Q96P20 1036 aa9.4□□□□□ -0.9
VPS29-210ENST00000552130 CFHR5Q9BXR6 569 aa9.4□□□□□ -0.9
VPS29-210ENST00000552130 MCCD1P59942 119 aaPredicted RBP9.39□□□□□ -0.91
VPS29-210ENST00000552130 PDE4CQ08493 712 aa9.39□□□□□ -0.91
VPS29-210ENST00000552130 UBAP2LQ14157 1087 aaKnown RBP9.39□□□□□ -0.91
VPS29-210ENST00000552130 NUCKS1Q9H1E3 243 aaKnown RBP9.39□□□□□ -0.91
VPS29-210ENST00000552130 NSFL1CQ9UNZ2 370 aaKnown RBP9.39□□□□□ -0.91
VPS29-210ENST00000552130 WASLO00401 505 aaPredicted RBP9.38□□□□□ -0.91
VPS29-210ENST00000552130 MAP2K3P46734 347 aa9.38□□□□□ -0.91
VPS29-210ENST00000552130 SNRPNP63162 240 aaKnown RBP9.38□□□□□ -0.91
VPS29-210ENST00000552130 TAS1R3Q7RTX0 852 aa9.38□□□□□ -0.91
VPS29-210ENST00000552130 OXCT2Q9BYC2 517 aaPredicted RBP9.38□□□□□ -0.91
VPS29-210ENST00000552130 TIMMDC1Q9NPL8 285 aa9.38□□□□□ -0.91
VPS29-210ENST00000552130 HRH3Q9Y5N1 445 aa9.38□□□□□ -0.91
VPS29-210ENST00000552130 GPR37L1O60883 481 aa9.37□□□□□ -0.91
VPS29-210ENST00000552130 C1orf229Q6ZS94 237 aaPredicted RBP9.37□□□□□ -0.91
VPS29-210ENST00000552130 ARHGEF10LQ9HCE6 1279 aa9.37□□□□□ -0.91
VPS29-210ENST00000552130 KRBA1A5PL33 1030 aa9.36□□□□□ -0.91
VPS29-210ENST00000552130 SHISA8B8ZZ34 492 aa9.36□□□□□ -0.91
VPS29-210ENST00000552130 PPP1R15AO75807 674 aaPredicted RBP9.35□□□□□ -0.91
VPS29-210ENST00000552130 KCNA1Q09470 495 aa9.35□□□□□ -0.91
VPS29-210ENST00000552130 NR1H3Q13133 447 aa9.35□□□□□ -0.91
VPS29-210ENST00000552130 PCMTD1Q96MG8 357 aaPredicted RBP9.35□□□□□ -0.91
VPS29-210ENST00000552130 IL2RAP01589 272 aa9.34□□□□□ -0.91
VPS29-210ENST00000552130 HOXB4P17483 251 aaPredicted RBP9.34□□□□□ -0.91
VPS29-210ENST00000552130 ALYREFQ86V81 257 aaKnown RBP9.34□□□□□ -0.91
VPS29-210ENST00000552130 KLRG1Q96E93 195 aa9.34□□□□□ -0.91
VPS29-210ENST00000552130 POM121Q96HA1 1249 aa9.34□□□□□ -0.91
VPS29-210ENST00000552130 ESYT1Q9BSJ8 1104 aa9.34□□□□□ -0.91
VPS29-210ENST00000552130 PCDHB11Q9Y5F2 797 aa9.34□□□□□ -0.91
VPS29-210ENST00000552130 GNRH1P01148 92 aa9.33□□□□□ -0.92
VPS29-210ENST00000552130 COL8A1P27658 744 aa9.33□□□□□ -0.92
VPS29-210ENST00000552130 SOCS7O14512 581 aa9.32□□□□□ -0.92
VPS29-210ENST00000552130 PPM1GO15355 546 aaPredicted RBP9.32□□□□□ -0.92
VPS29-210ENST00000552130 CENPCQ03188 943 aa9.32□□□□□ -0.92
VPS29-210ENST00000552130 LBRQ14739 615 aaKnown RBP9.32□□□□□ -0.92
VPS29-210ENST00000552130 CCDC27Q2M243 656 aa9.32□□□□□ -0.92
VPS29-210ENST00000552130 ZNF592Q92610 1267 aa9.32□□□□□ -0.92
VPS29-210ENST00000552130 CNKSR1Q969H4 720 aa9.32□□□□□ -0.92
VPS29-210ENST00000552130 FHDC1Q9C0D6 1143 aaPredicted RBP9.32□□□□□ -0.92
VPS29-210ENST00000552130 A0A1B0GTH6 734 aa9.31□□□□□ -0.92
VPS29-210ENST00000552130 K7ELQ4 463 aaPredicted RBP9.31□□□□□ -0.92
VPS29-210ENST00000552130 BAG6P46379 1132 aa9.31□□□□□ -0.92
VPS29-210ENST00000552130 GALNT6Q8NCL4 622 aa9.31□□□□□ -0.92
VPS29-210ENST00000552130 XAGE2Q96GT9 111 aa9.31□□□□□ -0.92
VPS29-210ENST00000552130 RAB6BQ9NRW1 208 aa9.31□□□□□ -0.92
VPS29-210ENST00000552130 GDF2Q9UK05 429 aaPredicted RBP9.31□□□□□ -0.92
VPS29-210ENST00000552130 MKL2Q9ULH7 1088 aa9.31□□□□□ -0.92
VPS29-210ENST00000552130 ACIN1Q9UKV3 1341 aaKnown RBP9.31□□□□□ -0.92
VPS29-210ENST00000552130 LINC00114Q6XXX2 140 aa9.3□□□□□ -0.92
VPS29-210ENST00000552130 NDFIP2Q9NV92 336 aa9.3□□□□□ -0.92
VPS29-210ENST00000552130 BRD1O95696 1058 aa9.29□□□□□ -0.92
VPS29-210ENST00000552130 UBE2Q2Q8WVN8 375 aa9.29□□□□□ -0.92
VPS29-210ENST00000552130 EDARADDQ8WWZ3 215 aa9.29□□□□□ -0.92
VPS29-210ENST00000552130 PHF24Q9UPV7 400 aa9.29□□□□□ -0.92
VPS29-210ENST00000552130 C2CD2LO14523 706 aa9.28□□□□□ -0.92
VPS29-210ENST00000552130 GPAMQ9HCL2 828 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms