RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ESCO1Q5FWF5 840 aa8.5□□□□□ -1.05
CD44-215ENST00000525241 ANKMY2Q8IV38 441 aa8.5□□□□□ -1.05
CD44-215ENST00000525241 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.5□□□□□ -1.05
CD44-215ENST00000525241 ZNF358Q9NW07 568 aa8.5□□□□□ -1.05
CD44-215ENST00000525241 SLC4A9Q96Q91 983 aa8.49□□□□□ -1.05
CD44-215ENST00000525241 ZMIZ1Q9ULJ6 1067 aa8.49□□□□□ -1.05
CD44-215ENST00000525241 NOVA2Q9UNW9 492 aaKnown RBP8.49□□□□□ -1.05
CD44-215ENST00000525241 SFI1A8K8P3 1242 aa8.48□□□□□ -1.05
CD44-215ENST00000525241 GMPR2Q9P2T1 348 aaKnown RBP8.48□□□□□ -1.05
CD44-215ENST00000525241 SERTAD1Q9UHV2 236 aa8.48□□□□□ -1.05
CD44-215ENST00000525241 SOS2Q07890 1332 aaPredicted RBP8.48□□□□□ -1.05
CD44-215ENST00000525241 GPC1P35052 558 aa8.47□□□□□ -1.05
CD44-215ENST00000525241 RNF144AP50876 292 aaPredicted RBP8.47□□□□□ -1.05
CD44-215ENST00000525241 SEC13P55735 322 aa8.47□□□□□ -1.05
CD44-215ENST00000525241 CENPCQ03188 943 aa8.47□□□□□ -1.05
CD44-215ENST00000525241 FOXD4L5Q5VV16 416 aaPredicted RBP8.47□□□□□ -1.05
CD44-215ENST00000525241 NLRP3Q96P20 1036 aa8.47□□□□□ -1.05
CD44-215ENST00000525241 FHDC1Q9C0D6 1143 aaPredicted RBP8.47□□□□□ -1.05
CD44-215ENST00000525241 POLMQ9NP87 494 aaPredicted RBP8.47□□□□□ -1.05
CD44-215ENST00000525241 ACIN1Q9UKV3 1341 aaKnown RBP8.47□□□□□ -1.05
CD44-215ENST00000525241 TTLL8A6PVC2 850 aa8.46□□□□□ -1.06
CD44-215ENST00000525241 M0R2N6 131 aa8.46□□□□□ -1.06
CD44-215ENST00000525241 SMTNP53814 917 aa8.46□□□□□ -1.06
CD44-215ENST00000525241 FAM200AQ8TCP9 573 aa8.46□□□□□ -1.06
CD44-215ENST00000525241 STK32AQ8WU08 396 aa8.46□□□□□ -1.06
CD44-215ENST00000525241 GRIP2Q9C0E4 1043 aa8.46□□□□□ -1.06
CD44-215ENST00000525241 RBM19Q9Y4C8 960 aaKnown RBP8.46□□□□□ -1.06
CD44-215ENST00000525241 BACH1O14867 736 aa8.45□□□□□ -1.06
CD44-215ENST00000525241 EPHA4P54764 986 aa8.45□□□□□ -1.06
CD44-215ENST00000525241 RNF217Q8TC41 542 aa8.45□□□□□ -1.06
CD44-215ENST00000525241 SENP2Q9HC62 589 aa8.45□□□□□ -1.06
CD44-215ENST00000525241 A6NJY4 79 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 POTECB2RU33 542 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 FAM69CQ0P6D2 419 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 MTFR1Q15390 333 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 TLR1Q15399 786 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 TMEM164Q5U3C3 297 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 TNS4Q8IZW8 715 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 TSEN2Q8NCE0 465 aaKnown RBP8.44□□□□□ -1.06
CD44-215ENST00000525241 TRIM47Q96LD4 638 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 DNMT3LQ9UJW3 386 aa8.44□□□□□ -1.06
CD44-215ENST00000525241 FIGNL2A6NMB9 653 aa8.43□□□□□ -1.06
CD44-215ENST00000525241 KIFC2Q96AC6 838 aa8.43□□□□□ -1.06
CD44-215ENST00000525241 SNRPBP14678 240 aaKnown RBP8.42□□□□□ -1.06
CD44-215ENST00000525241 FOXK2Q01167 660 aa8.42□□□□□ -1.06
CD44-215ENST00000525241 SLC27A3Q5K4L6 730 aa8.42□□□□□ -1.06
CD44-215ENST00000525241 ZSCAN10Q96SZ4 725 aaPredicted RBP8.42□□□□□ -1.06
CD44-215ENST00000525241 SCHIP1Q9P0W5 487 aaPredicted RBP8.42□□□□□ -1.06
CD44-215ENST00000525241 IQSEC3Q9UPP2 1182 aaPredicted RBP8.42□□□□□ -1.06
CD44-215ENST00000525241 USP3Q9Y6I4 520 aa8.42□□□□□ -1.06
CD44-215ENST00000525241 TMEM88BA6NKF7 163 aa8.41□□□□□ -1.06
CD44-215ENST00000525241 SOBPA7XYQ1 873 aa8.41□□□□□ -1.06
CD44-215ENST00000525241 CDK2AP1O14519 115 aa8.41□□□□□ -1.06
CD44-215ENST00000525241 PPARGC1BQ86YN6 1023 aaKnown RBP8.41□□□□□ -1.06
CD44-215ENST00000525241 ZNF295-AS1Q8N0V1 137 aa8.41□□□□□ -1.06
CD44-215ENST00000525241 SPATA31C2B4DYI2 1134 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 C11orf95C9JLR9 678 aaPredicted RBP8.4□□□□□ -1.06
CD44-215ENST00000525241 MAN1A2O60476 641 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 LGR5O75473 907 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 CSB-PGBD3P0DP91 1061 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 SWI5Q1ZZU3 235 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 LYSMD3Q7Z3D4 306 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 PRICKLE2Q7Z3G6 844 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 RETREG2Q8NC44 543 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 HINFPQ9BQA5 517 aa8.4□□□□□ -1.06
CD44-215ENST00000525241 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.39□□□□□ -1.07
CD44-215ENST00000525241 TSPAN10Q9H1Z9 355 aaPredicted RBP8.39□□□□□ -1.07
CD44-215ENST00000525241 SLAIN2Q9P270 581 aa8.39□□□□□ -1.07
CD44-215ENST00000525241 CARNS1A5YM72 827 aa8.38□□□□□ -1.07
CD44-215ENST00000525241 C21orf2O43822 256 aa8.38□□□□□ -1.07
CD44-215ENST00000525241 POU4F2Q12837 409 aa8.38□□□□□ -1.07
CD44-215ENST00000525241 TBCELQ5QJ74 424 aa8.38□□□□□ -1.07
CD44-215ENST00000525241 TMEM214Q6NUQ4 689 aaKnown RBP8.38□□□□□ -1.07
CD44-215ENST00000525241 SLC9A9Q8IVB4 645 aa8.38□□□□□ -1.07
CD44-215ENST00000525241 RHOQP17081 205 aa8.37□□□□□ -1.07
CD44-215ENST00000525241 WEE1P30291 646 aa8.37□□□□□ -1.07
CD44-215ENST00000525241 C4orf17Q53FE4 359 aa8.37□□□□□ -1.07
CD44-215ENST00000525241 NBPF10Q6P3W6 841 aaKnown RBP8.37□□□□□ -1.07
CD44-215ENST00000525241 NBPF15Q8N660 670 aa8.37□□□□□ -1.07
CD44-215ENST00000525241 RHBDD1Q8TEB9 315 aa8.37□□□□□ -1.07
CD44-215ENST00000525241 CLP1Q92989 425 aaKnown RBP8.37□□□□□ -1.07
CD44-215ENST00000525241 USTQ9Y2C2 406 aa8.37□□□□□ -1.07
CD44-215ENST00000525241 GTF2E1P29083 439 aaPredicted RBP8.36□□□□□ -1.07
CD44-215ENST00000525241 WDR44Q5JSH3 913 aa8.36□□□□□ -1.07
CD44-215ENST00000525241 GNASQ5JWF2 1037 aa8.36□□□□□ -1.07
CD44-215ENST00000525241 TAS1R3Q7RTX0 852 aa8.36□□□□□ -1.07
CD44-215ENST00000525241 SCG3Q8WXD2 468 aaKnown RBP8.36□□□□□ -1.07
CD44-215ENST00000525241 NIFKQ9BYG3 293 aaKnown RBP8.36□□□□□ -1.07
CD44-215ENST00000525241 ATAD2Q6PL18 1390 aa8.35□□□□□ -1.07
CD44-215ENST00000525241 OCLNQ16625 522 aa8.35□□□□□ -1.07
CD44-215ENST00000525241 GAS2L2Q8NHY3 880 aa8.35□□□□□ -1.07
CD44-215ENST00000525241 ZDHHC1Q8WTX9 485 aa8.35□□□□□ -1.07
CD44-215ENST00000525241 PRIMPOLQ96LW4 560 aa8.35□□□□□ -1.07
CD44-215ENST00000525241 SENP3-EIF4A1A0A087X0R7 540 aa8.34□□□□□ -1.07
CD44-215ENST00000525241 PRMT3O60678 531 aa8.34□□□□□ -1.07
CD44-215ENST00000525241 IGFBP4P22692 258 aa8.34□□□□□ -1.07
CD44-215ENST00000525241 PHKA2P46019 1235 aa8.34□□□□□ -1.07
CD44-215ENST00000525241 PTSQ03393 145 aa8.34□□□□□ -1.07
CD44-215ENST00000525241 TEAD4Q15561 434 aa8.34□□□□□ -1.07
CD44-215ENST00000525241 ZNF787Q6DD87 383 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms