RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 A0A1B0GTH6 734 aa7.25□□□□□ -1.25
NUP54-208ENST00000508604 CENPCQ03188 943 aa7.25□□□□□ -1.25
NUP54-208ENST00000508604 TMEM214Q6NUQ4 689 aaKnown RBP7.25□□□□□ -1.25
NUP54-208ENST00000508604 DCAF5Q96JK2 942 aa7.25□□□□□ -1.25
NUP54-208ENST00000508604 OXCT2Q9BYC2 517 aaPredicted RBP7.25□□□□□ -1.25
NUP54-208ENST00000508604 GPAMQ9HCL2 828 aa7.24□□□□□ -1.25
NUP54-208ENST00000508604 OIP5O43482 229 aa7.23□□□□□ -1.25
NUP54-208ENST00000508604 PHKA2P46019 1235 aa7.23□□□□□ -1.25
NUP54-208ENST00000508604 LBRQ14739 615 aaKnown RBP7.23□□□□□ -1.25
NUP54-208ENST00000508604 PLA2G4EQ3MJ16 856 aa7.23□□□□□ -1.25
NUP54-208ENST00000508604 GALNT6Q8NCL4 622 aa7.23□□□□□ -1.25
NUP54-208ENST00000508604 CEP126Q9P2H0 1117 aa7.22□□□□□ -1.25
NUP54-208ENST00000508604 IL2RAP01589 272 aa7.22□□□□□ -1.25
NUP54-208ENST00000508604 EIF4G2P78344 907 aaKnown RBP eCLIP7.22□□□□□ -1.25
NUP54-208ENST00000508604 USP4Q13107 963 aa7.22□□□□□ -1.25
NUP54-208ENST00000508604 EFHC2Q5JST6 749 aa7.22□□□□□ -1.25
NUP54-208ENST00000508604 MTMR14Q8NCE2 650 aa7.22□□□□□ -1.25
NUP54-208ENST00000508604 GDF2Q9UK05 429 aaPredicted RBP7.22□□□□□ -1.25
NUP54-208ENST00000508604 SIRT1Q96EB6 747 aa7.21□□□□□ -1.26
NUP54-208ENST00000508604 XAGE2Q96GT9 111 aa7.21□□□□□ -1.26
NUP54-208ENST00000508604 RRAGCQ9HB90 399 aa7.21□□□□□ -1.26
NUP54-208ENST00000508604 MKL2Q9ULH7 1088 aa7.21□□□□□ -1.26
NUP54-208ENST00000508604 PIK3R2O00459 728 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 SLFNL1Q499Z3 407 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 GOLGA6L1Q8N7Z2 621 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 KLRG1Q96E93 195 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 SPOCK3Q9BQ16 436 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 DOLKQ9UPQ8 538 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 BMP4P12644 408 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 ALYREFQ86V81 257 aaKnown RBP7.19□□□□□ -1.26
NUP54-208ENST00000508604 RHBDD1Q8TEB9 315 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 CCDC85AQ96PX6 553 aaPredicted RBP7.19□□□□□ -1.26
NUP54-208ENST00000508604 CDCA7Q9BWT1 371 aaPredicted RBP7.19□□□□□ -1.26
NUP54-208ENST00000508604 SNRKQ9NRH2 765 aa7.19□□□□□ -1.26
NUP54-208ENST00000508604 ATXN7L1Q9ULK2 861 aaPredicted RBP7.19□□□□□ -1.26
NUP54-208ENST00000508604 AMPD1P23109 780 aa7.18□□□□□ -1.26
NUP54-208ENST00000508604 C4orf17Q53FE4 359 aa7.18□□□□□ -1.26
NUP54-208ENST00000508604 EDARADDQ8WWZ3 215 aa7.18□□□□□ -1.26
NUP54-208ENST00000508604 RUBCNLQ9H714 662 aa7.18□□□□□ -1.26
NUP54-208ENST00000508604 MSX1P28360 303 aa7.17□□□□□ -1.26
NUP54-208ENST00000508604 TLR1Q15399 786 aa7.17□□□□□ -1.26
NUP54-208ENST00000508604 HRH3Q9Y5N1 445 aa7.17□□□□□ -1.26
NUP54-208ENST00000508604 GPR37L1O60883 481 aa7.16□□□□□ -1.26
NUP54-208ENST00000508604 BRPF1P55201 1214 aaPredicted RBP7.16□□□□□ -1.26
NUP54-208ENST00000508604 FIGNL1Q6PIW4 674 aa7.16□□□□□ -1.26
NUP54-208ENST00000508604 RNF135Q8IUD6 432 aa7.16□□□□□ -1.26
NUP54-208ENST00000508604 FHDC1Q9C0D6 1143 aaPredicted RBP7.16□□□□□ -1.26
NUP54-208ENST00000508604 ADAM23O75077 832 aa7.16□□□□□ -1.26
NUP54-208ENST00000508604 TBC1D9Q6ZT07 1266 aa7.16□□□□□ -1.26
NUP54-208ENST00000508604 FGFR3P22607 806 aa7.15□□□□□ -1.27
NUP54-208ENST00000508604 SNRPNP63162 240 aaKnown RBP7.15□□□□□ -1.27
NUP54-208ENST00000508604 OXLD1Q5BKU9 147 aa7.15□□□□□ -1.27
NUP54-208ENST00000508604 PPARGC1BQ86YN6 1023 aaKnown RBP7.15□□□□□ -1.27
NUP54-208ENST00000508604 SHISA8B8ZZ34 492 aa7.14□□□□□ -1.27
NUP54-208ENST00000508604 THBS1P07996 1170 aa7.14□□□□□ -1.27
NUP54-208ENST00000508604 ABHD17AQ96GS6 310 aa7.14□□□□□ -1.27
NUP54-208ENST00000508604 TBC1D2BQ9UPU7 963 aa7.14□□□□□ -1.27
NUP54-208ENST00000508604 C1orf216Q8TAB5 229 aa7.13□□□□□ -1.27
NUP54-208ENST00000508604 CRISPLD1Q9H336 500 aa7.13□□□□□ -1.27
NUP54-208ENST00000508604 ETNK1Q9HBU6 452 aa7.13□□□□□ -1.27
NUP54-208ENST00000508604 PROCP04070 461 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 PLA2G4AP47712 749 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 SLCO4C1Q6ZQN7 724 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 AIDAQ96BJ3 306 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 GGA1Q9UJY5 639 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 BNIP3LO60238 219 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 GRIN2CQ14957 1233 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 PHTF2Q8N3S3 785 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 NIFKQ9BYG3 293 aaKnown RBP7.12□□□□□ -1.27
NUP54-208ENST00000508604 PCDHGC4Q9Y5F7 938 aa7.12□□□□□ -1.27
NUP54-208ENST00000508604 K7ELQ4 463 aaPredicted RBP7.11□□□□□ -1.27
NUP54-208ENST00000508604 UBAP2LQ14157 1087 aaKnown RBP7.11□□□□□ -1.27
NUP54-208ENST00000508604 MAP7D1Q3KQU3 841 aa7.11□□□□□ -1.27
NUP54-208ENST00000508604 C1orf229Q6ZS94 237 aaPredicted RBP7.11□□□□□ -1.27
NUP54-208ENST00000508604 NOP53Q9NZM5 478 aaKnown RBP7.11□□□□□ -1.27
NUP54-208ENST00000508604 KRBA1A5PL33 1030 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 GNB5O14775 395 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 SLC24A1O60721 1099 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 ITGB2P05107 769 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 INHAP05111 366 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 ARAFP10398 606 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 GDF10P55107 478 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 CTBSQ01459 385 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 NBPF1Q3BBV0 1214 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 TSGA10IPQ3SY00 556 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 NLRP8Q86W28 1048 aa7.1□□□□□ -1.27
NUP54-208ENST00000508604 TATP17735 454 aaPredicted RBP7.09□□□□□ -1.27
NUP54-208ENST00000508604 BAG6P46379 1132 aa7.09□□□□□ -1.27
NUP54-208ENST00000508604 WASHC4Q2M389 1173 aa7.09□□□□□ -1.27
NUP54-208ENST00000508604 ARSJQ5FYB0 599 aaPredicted RBP7.09□□□□□ -1.27
NUP54-208ENST00000508604 ZCCHC2Q9C0B9 1178 aaKnown RBP7.09□□□□□ -1.27
NUP54-208ENST00000508604 NDFIP2Q9NV92 336 aa7.09□□□□□ -1.27
NUP54-208ENST00000508604 GJA3Q9Y6H8 435 aa7.09□□□□□ -1.27
NUP54-208ENST00000508604 C2CD2LO14523 706 aa7.09□□□□□ -1.27
NUP54-208ENST00000508604 ATXN7O15265 892 aaPredicted RBP7.09□□□□□ -1.27
NUP54-208ENST00000508604 EPXP11678 715 aa7.09□□□□□ -1.27
NUP54-208ENST00000508604 VAC14Q08AM6 782 aa7.09□□□□□ -1.27
NUP54-208ENST00000508604 SEMA3FQ13275 785 aa7.09□□□□□ -1.27
NUP54-208ENST00000508604 NEURL1BA8MQ27 555 aa7.08□□□□□ -1.28
NUP54-208ENST00000508604 STAU1O95793 577 aaKnown RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms