RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 PLEKHO1Q53GL0 409 aaPredicted RBP31.82■■■□□ 2.68
COL27A1-208ENST00000494780 ERVV-2B6SEH9 535 aa31.81■■■□□ 2.68
COL27A1-208ENST00000494780 AMOTQ4VCS5 1084 aa31.8■■■□□ 2.68
COL27A1-208ENST00000494780 SMIM5Q71RC9 77 aa31.8■■■□□ 2.68
COL27A1-208ENST00000494780 DCAF5Q96JK2 942 aa31.8■■■□□ 2.68
COL27A1-208ENST00000494780 KNSTRNQ9Y448 316 aa31.8■■■□□ 2.68
COL27A1-208ENST00000494780 GNPATO15228 680 aa31.78■■■□□ 2.68
COL27A1-208ENST00000494780 ZNF530Q6P9A1 599 aaPredicted RBP31.76■■■□□ 2.67
COL27A1-208ENST00000494780 KDRP35968 1356 aa31.76■■■□□ 2.67
COL27A1-208ENST00000494780 ZNF831Q5JPB2 1677 aa31.73■■■□□ 2.67
COL27A1-208ENST00000494780 AEBP1Q8IUX7 1158 aa31.72■■■□□ 2.67
COL27A1-208ENST00000494780 KDM6AO15550 1401 aaPredicted RBP31.72■■■□□ 2.67
COL27A1-208ENST00000494780 CABP4P57796 275 aa31.71■■■□□ 2.67
COL27A1-208ENST00000494780 C1QTNF8P60827 252 aa31.71■■■□□ 2.67
COL27A1-208ENST00000494780 C1orf141Q5JVX7 400 aa31.7■■■□□ 2.67
COL27A1-208ENST00000494780 SLC4A9Q96Q91 983 aa31.7■■■□□ 2.67
COL27A1-208ENST00000494780 RBM42Q9BTD8 480 aaKnown RBP31.7■■■□□ 2.67
COL27A1-208ENST00000494780 MTHFSP49914 203 aa31.69■■■□□ 2.66
COL27A1-208ENST00000494780 SULT6B1Q6IMI4 303 aa31.69■■■□□ 2.66
COL27A1-208ENST00000494780 RTCBQ9Y3I0 505 aaKnown RBP31.69■■■□□ 2.66
COL27A1-208ENST00000494780 IL13P35225 146 aa31.68■■■□□ 2.66
COL27A1-208ENST00000494780 AMER1Q5JTC6 1135 aaPredicted RBP31.68■■■□□ 2.66
COL27A1-208ENST00000494780 RC3H1Q5TC82 1133 aaKnown RBP31.68■■■□□ 2.66
COL27A1-208ENST00000494780 TRAPPC3LQ5T215 181 aa31.67■■■□□ 2.66
COL27A1-208ENST00000494780 GOLGB1Q14789 3259 aaKnown RBP31.67■■■□□ 2.66
COL27A1-208ENST00000494780 KIF7Q2M1P5 1343 aa31.66■■■□□ 2.66
COL27A1-208ENST00000494780 GIGYF1O75420 1035 aaPredicted RBP31.65■■■□□ 2.66
COL27A1-208ENST00000494780 CNTNAP4Q9C0A0 1308 aa31.65■■■□□ 2.66
COL27A1-208ENST00000494780 ADRA2BP18089 450 aa31.64■■■□□ 2.66
COL27A1-208ENST00000494780 COL5A3P25940 1745 aaPredicted RBP31.63■■■□□ 2.65
COL27A1-208ENST00000494780 MMP10P09238 476 aa31.63■■■□□ 2.65
COL27A1-208ENST00000494780 NLGN1Q8N2Q7 840 aa31.62■■■□□ 2.65
COL27A1-208ENST00000494780 RPS6KA4O75676 772 aa31.61■■■□□ 2.65
COL27A1-208ENST00000494780 NFATC2IPQ8NCF5 419 aa31.61■■■□□ 2.65
COL27A1-208ENST00000494780 ARHGEF1Q92888 912 aaKnown RBP31.6■■■□□ 2.65
COL27A1-208ENST00000494780 SENP3-EIF4A1A0A087X0R7 540 aa31.58■■■□□ 2.65
COL27A1-208ENST00000494780 PTCD1O75127 700 aaKnown RBP31.58■■■□□ 2.65
COL27A1-208ENST00000494780 ATP10DQ9P241 1426 aa31.57■■■□□ 2.64
COL27A1-208ENST00000494780 RFC4P35249 363 aa31.56■■■□□ 2.64
COL27A1-208ENST00000494780 AKAP4Q5JQC9 854 aa31.56■■■□□ 2.64
COL27A1-208ENST00000494780 PER1O15534 1290 aaPredicted RBP31.55■■■□□ 2.64
COL27A1-208ENST00000494780 WWC3Q9ULE0 1092 aa31.55■■■□□ 2.64
COL27A1-208ENST00000494780 SCN11AQ9UI33 1791 aa31.55■■■□□ 2.64
COL27A1-208ENST00000494780 GYS1P13807 737 aa31.54■■■□□ 2.64
COL27A1-208ENST00000494780 ADCY9O60503 1353 aa31.54■■■□□ 2.64
COL27A1-208ENST00000494780 KIF13BQ9NQT8 1826 aa31.54■■■□□ 2.64
COL27A1-208ENST00000494780 CICQ96RK0 1608 aaPredicted RBP31.53■■■□□ 2.64
COL27A1-208ENST00000494780 TGFB2P61812 414 aa31.53■■■□□ 2.64
COL27A1-208ENST00000494780 MYH14Q7Z406 1995 aaKnown RBP31.53■■■□□ 2.64
COL27A1-208ENST00000494780 CRKLP46109 303 aaKnown RBP31.52■■■□□ 2.64
COL27A1-208ENST00000494780 PXDNLA1KZ92 1463 aa31.52■■■□□ 2.64
COL27A1-208ENST00000494780 C10orf71Q711Q0 1435 aa31.51■■■□□ 2.64
COL27A1-208ENST00000494780 SLC52A2Q9HAB3 445 aa31.5■■■□□ 2.63
COL27A1-208ENST00000494780 CCDC87Q9NVE4 849 aa31.5■■■□□ 2.63
COL27A1-208ENST00000494780 HMOX1P09601 288 aa31.49■■■□□ 2.63
COL27A1-208ENST00000494780 C4AP0C0L4 1744 aa31.49■■■□□ 2.63
COL27A1-208ENST00000494780 TJP1Q07157 1748 aa31.49■■■□□ 2.63
COL27A1-208ENST00000494780 DIAPH1O60610 1272 aaKnown RBP31.48■■■□□ 2.63
COL27A1-208ENST00000494780 CC2D1BQ5T0F9 858 aaKnown RBP31.48■■■□□ 2.63
COL27A1-208ENST00000494780 PARP3Q9Y6F1 533 aa31.48■■■□□ 2.63
COL27A1-208ENST00000494780 KIAA1551Q9HCM1 1747 aa31.47■■■□□ 2.63
COL27A1-208ENST00000494780 LGR6Q9HBX8 967 aa31.47■■■□□ 2.63
COL27A1-208ENST00000494780 GPBP1L1Q9HC44 474 aaPredicted RBP31.47■■■□□ 2.63
COL27A1-208ENST00000494780 RNMTO43148 476 aaKnown RBP31.46■■■□□ 2.63
COL27A1-208ENST00000494780 MRC1P22897 1456 aa31.46■■■□□ 2.63
COL27A1-208ENST00000494780 NPC1L1Q9UHC9 1359 aa31.44■■■□□ 2.62
COL27A1-208ENST00000494780 A0A0G2JLW4 131 aa31.44■■■□□ 2.62
COL27A1-208ENST00000494780 USP42Q9H9J4 1324 aaKnown RBP31.44■■■□□ 2.62
COL27A1-208ENST00000494780 N4BP2Q86UW6 1770 aaPredicted RBP31.43■■■□□ 2.62
COL27A1-208ENST00000494780 INTS5Q6P9B9 1019 aaKnown RBP31.43■■■□□ 2.62
COL27A1-208ENST00000494780 MTHFSDQ2M296 383 aaKnown RBP31.42■■■□□ 2.62
COL27A1-208ENST00000494780 SRP68Q9UHB9 627 aaKnown RBP31.42■■■□□ 2.62
COL27A1-208ENST00000494780 DNAJC10Q8IXB1 793 aa31.41■■■□□ 2.62
COL27A1-208ENST00000494780 BCS1LQ9Y276 419 aa31.41■■■□□ 2.62
COL27A1-208ENST00000494780 DPEP1P16444 411 aa31.4■■■□□ 2.62
COL27A1-208ENST00000494780 ADAMTS7Q9UKP4 1686 aa31.4■■■□□ 2.62
COL27A1-208ENST00000494780 FKBP8Q14318 412 aa31.39■■■□□ 2.62
COL27A1-208ENST00000494780 ZNF526Q8TF50 670 aaPredicted RBP31.39■■■□□ 2.62
COL27A1-208ENST00000494780 SLC39A6Q13433 755 aa31.38■■■□□ 2.61
COL27A1-208ENST00000494780 VIRMAQ69YN4 1812 aaKnown RBP31.36■■■□□ 2.61
COL27A1-208ENST00000494780 KCPQ6ZWJ8 1503 aa31.36■■■□□ 2.61
COL27A1-208ENST00000494780 COL3A1P02461 1466 aaPredicted RBP31.36■■■□□ 2.61
COL27A1-208ENST00000494780 CYP19A1P11511 503 aaPredicted RBP31.36■■■□□ 2.61
COL27A1-208ENST00000494780 SOS1Q07889 1333 aaPredicted RBP31.35■■■□□ 2.61
COL27A1-208ENST00000494780 DDR1Q08345 913 aa31.35■■■□□ 2.61
COL27A1-208ENST00000494780 ZPR1O75312 459 aa31.34■■■□□ 2.61
COL27A1-208ENST00000494780 FCHSD2O94868 740 aa31.34■■■□□ 2.61
COL27A1-208ENST00000494780 VSIG10Q8N0Z9 540 aa31.34■■■□□ 2.61
COL27A1-208ENST00000494780 KCNA3P22001 575 aa31.33■■■□□ 2.61
COL27A1-208ENST00000494780 BRCA1P38398 1863 aaKnown RBP31.33■■■□□ 2.61
COL27A1-208ENST00000494780 TM4SF1P30408 202 aa31.32■■■□□ 2.6
COL27A1-208ENST00000494780 ARHGAP27Q6ZUM4 889 aa31.32■■■□□ 2.6
COL27A1-208ENST00000494780 U2SURPO15042 1029 aaKnown RBP31.31■■■□□ 2.6
COL27A1-208ENST00000494780 USPL1Q5W0Q7 1092 aa31.31■■■□□ 2.6
COL27A1-208ENST00000494780 PIM2Q9P1W9 311 aa31.31■■■□□ 2.6
COL27A1-208ENST00000494780 POLRMTO00411 1230 aaKnown RBP31.3■■■□□ 2.6
COL27A1-208ENST00000494780 CNGB1Q14028 1251 aaPredicted RBP31.3■■■□□ 2.6
COL27A1-208ENST00000494780 GAS2L2Q8NHY3 880 aa31.29■■■□□ 2.6
COL27A1-208ENST00000494780 NARFQ9UHQ1 456 aa31.29■■■□□ 2.6
COL27A1-208ENST00000494780 COL15A1P39059 1388 aa31.29■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms