RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 NEUROD2Q15784 382 aa11.09□□□□□ -0.63
CLK1-212ENST00000482590 CC2D2BQ6DHV5 1058 aa11.09□□□□□ -0.63
CLK1-212ENST00000482590 C14orf37Q86TY3 774 aa11.09□□□□□ -0.63
CLK1-212ENST00000482590 KRTAP4-6Q9BYQ5 205 aa11.09□□□□□ -0.63
CLK1-212ENST00000482590 ADAMTS12P58397 1594 aa11.08□□□□□ -0.64
CLK1-212ENST00000482590 CCDC125Q86Z20 511 aa11.08□□□□□ -0.64
CLK1-212ENST00000482590 CHMP7Q8WUX9 453 aaPredicted RBP11.08□□□□□ -0.64
CLK1-212ENST00000482590 ZNF837Q96EG3 531 aaPredicted RBP11.08□□□□□ -0.64
CLK1-212ENST00000482590 TOP2BQ02880 1626 aa11.08□□□□□ -0.64
CLK1-212ENST00000482590 SUZ12Q15022 739 aaKnown RBP11.07□□□□□ -0.64
CLK1-212ENST00000482590 TRIM22Q8IYM9 498 aa11.07□□□□□ -0.64
CLK1-212ENST00000482590 SUPT5HO00267 1087 aaKnown RBP11.06□□□□□ -0.64
CLK1-212ENST00000482590 GPR37L1O60883 481 aa11.06□□□□□ -0.64
CLK1-212ENST00000482590 IRS1P35568 1242 aa11.06□□□□□ -0.64
CLK1-212ENST00000482590 SCTRP47872 440 aa11.06□□□□□ -0.64
CLK1-212ENST00000482590 NR1H3Q13133 447 aa11.06□□□□□ -0.64
CLK1-212ENST00000482590 DBN1Q16643 649 aa11.06□□□□□ -0.64
CLK1-212ENST00000482590 RNF20Q5VTR2 975 aa11.06□□□□□ -0.64
CLK1-212ENST00000482590 MARSP56192 900 aaKnown RBP11.05□□□□□ -0.64
CLK1-212ENST00000482590 POU4F2Q12837 409 aa11.05□□□□□ -0.64
CLK1-212ENST00000482590 GMCL1Q96IK5 515 aa11.05□□□□□ -0.64
CLK1-212ENST00000482590 GPR25O00155 361 aa11.04□□□□□ -0.64
CLK1-212ENST00000482590 CELA2BP08218 269 aaPredicted RBP11.04□□□□□ -0.64
CLK1-212ENST00000482590 RIPOR1Q6ZS17 1223 aa11.04□□□□□ -0.64
CLK1-212ENST00000482590 PODXL2Q9NZ53 605 aa11.04□□□□□ -0.64
CLK1-212ENST00000482590 DYRK1BQ9Y463 629 aa11.04□□□□□ -0.64
CLK1-212ENST00000482590 MCCD1P59942 119 aaPredicted RBP11.03□□□□□ -0.64
CLK1-212ENST00000482590 NLRP3Q96P20 1036 aa11.03□□□□□ -0.64
CLK1-212ENST00000482590 GRIP2Q9C0E4 1043 aa11.03□□□□□ -0.64
CLK1-212ENST00000482590 MBIPQ9NS73 344 aa11.03□□□□□ -0.64
CLK1-212ENST00000482590 PCDHB11Q9Y5F2 797 aa11.03□□□□□ -0.64
CLK1-212ENST00000482590 GRIN2AQ12879 1464 aa11.02□□□□□ -0.65
CLK1-212ENST00000482590 MAP3K10Q02779 954 aa11.02□□□□□ -0.65
CLK1-212ENST00000482590 CLN3Q13286 438 aa11.02□□□□□ -0.65
CLK1-212ENST00000482590 SLC27A3Q5K4L6 730 aa11.02□□□□□ -0.65
CLK1-212ENST00000482590 CYP2U1Q7Z449 544 aa11.02□□□□□ -0.65
CLK1-212ENST00000482590 MTMR14Q8NCE2 650 aa11.02□□□□□ -0.65
CLK1-212ENST00000482590 OSBPL3Q9H4L5 887 aa11.02□□□□□ -0.65
CLK1-212ENST00000482590 WRNQ14191 1432 aaPredicted RBP eCLIP11.01□□□□□ -0.65
CLK1-212ENST00000482590 TRAK2O60296 914 aa11.01□□□□□ -0.65
CLK1-212ENST00000482590 NBPF10Q6P3W6 841 aaKnown RBP11.01□□□□□ -0.65
CLK1-212ENST00000482590 NBPF15Q8N660 670 aa11.01□□□□□ -0.65
CLK1-212ENST00000482590 BANK1Q8NDB2 785 aa11.01□□□□□ -0.65
CLK1-212ENST00000482590 SCARF2Q96GP6 870 aaPredicted RBP11.01□□□□□ -0.65
CLK1-212ENST00000482590 CEP170Q5SW79 1584 aa11.01□□□□□ -0.65
CLK1-212ENST00000482590 KANK3Q6NY19 840 aa11□□□□□ -0.65
CLK1-212ENST00000482590 FOXR1Q6PIV2 292 aa11□□□□□ -0.65
CLK1-212ENST00000482590 GTPBP3Q969Y2 492 aaKnown RBP11□□□□□ -0.65
CLK1-212ENST00000482590 GAS2L1Q99501 681 aaPredicted RBP11□□□□□ -0.65
CLK1-212ENST00000482590 ARHGEF10LQ9HCE6 1279 aa11□□□□□ -0.65
CLK1-212ENST00000482590 DNMT3AQ9Y6K1 912 aaPredicted RBP11□□□□□ -0.65
CLK1-212ENST00000482590 IGF1RP08069 1367 aa11□□□□□ -0.65
CLK1-212ENST00000482590 ERICH3Q5RHP9 1530 aa10.99□□□□□ -0.65
CLK1-212ENST00000482590 SHROOM2Q13796 1616 aa10.99□□□□□ -0.65
CLK1-212ENST00000482590 SOCS7O14512 581 aa10.99□□□□□ -0.65
CLK1-212ENST00000482590 BRPF1P55201 1214 aaPredicted RBP10.99□□□□□ -0.65
CLK1-212ENST00000482590 SPATA31C2B4DYI2 1134 aa10.98□□□□□ -0.65
CLK1-212ENST00000482590 H7C1W4 665 aa10.98□□□□□ -0.65
CLK1-212ENST00000482590 ZNF592Q92610 1267 aa10.98□□□□□ -0.65
CLK1-212ENST00000482590 ZNF330Q9Y3S2 320 aaPredicted RBP10.98□□□□□ -0.65
CLK1-212ENST00000482590 NDUFB9Q9Y6M9 179 aa10.98□□□□□ -0.65
CLK1-212ENST00000482590 WDR44Q5JSH3 913 aa10.97□□□□□ -0.65
CLK1-212ENST00000482590 GPAT2Q6NUI2 795 aa10.97□□□□□ -0.65
CLK1-212ENST00000482590 SNRKQ9NRH2 765 aa10.97□□□□□ -0.65
CLK1-212ENST00000482590 ERCC6L2Q5T890 1561 aa10.96□□□□□ -0.65
CLK1-212ENST00000482590 TIMMDC1Q9NPL8 285 aa10.96□□□□□ -0.65
CLK1-212ENST00000482590 ENAMQ9NRM1 1142 aa10.96□□□□□ -0.65
CLK1-212ENST00000482590 RAB6BQ9NRW1 208 aa10.96□□□□□ -0.65
CLK1-212ENST00000482590 FHAD1B1AJZ9 1412 aa10.95□□□□□ -0.66
CLK1-212ENST00000482590 NUP160Q12769 1436 aa10.95□□□□□ -0.66
CLK1-212ENST00000482590 WASLO00401 505 aaPredicted RBP10.95□□□□□ -0.66
CLK1-212ENST00000482590 TAS1R3Q7RTX0 852 aa10.95□□□□□ -0.66
CLK1-212ENST00000482590 ACDQ96AP0 544 aa10.95□□□□□ -0.66
CLK1-212ENST00000482590 ESF1Q9H501 851 aaKnown RBP10.95□□□□□ -0.66
CLK1-212ENST00000482590 TRERF1Q96PN7 1200 aa10.94□□□□□ -0.66
CLK1-212ENST00000482590 RUSC2Q8N2Y8 1516 aa10.94□□□□□ -0.66
CLK1-212ENST00000482590 GNRH1P01148 92 aa10.93□□□□□ -0.66
CLK1-212ENST00000482590 IL2RAP01589 272 aa10.93□□□□□ -0.66
CLK1-212ENST00000482590 F11P03951 625 aa10.93□□□□□ -0.66
CLK1-212ENST00000482590 BCRP11274 1271 aa10.93□□□□□ -0.66
CLK1-212ENST00000482590 CDCA7Q9BWT1 371 aaPredicted RBP10.93□□□□□ -0.66
CLK1-212ENST00000482590 NUCKS1Q9H1E3 243 aaKnown RBP10.93□□□□□ -0.66
CLK1-212ENST00000482590 CEP126Q9P2H0 1117 aa10.93□□□□□ -0.66
CLK1-212ENST00000482590 KIF13AQ9H1H9 1805 aa10.93□□□□□ -0.66
CLK1-212ENST00000482590 CNTNAP5Q8WYK1 1306 aa10.92□□□□□ -0.66
CLK1-212ENST00000482590 CNKSR1Q969H4 720 aa10.92□□□□□ -0.66
CLK1-212ENST00000482590 CCDC85AQ96PX6 553 aaPredicted RBP10.92□□□□□ -0.66
CLK1-212ENST00000482590 ESYT1Q9BSJ8 1104 aa10.92□□□□□ -0.66
CLK1-212ENST00000482590 IGHA1P01876 353 aa10.91□□□□□ -0.66
CLK1-212ENST00000482590 THBS1P07996 1170 aa10.91□□□□□ -0.66
CLK1-212ENST00000482590 CENPCQ03188 943 aa10.91□□□□□ -0.66
CLK1-212ENST00000482590 HRH3Q9Y5N1 445 aa10.91□□□□□ -0.66
CLK1-212ENST00000482590 CUL7Q14999 1698 aa10.91□□□□□ -0.66
CLK1-212ENST00000482590 MX2P20592 715 aa10.9□□□□□ -0.66
CLK1-212ENST00000482590 FOXK2Q01167 660 aa10.9□□□□□ -0.66
CLK1-212ENST00000482590 APBB1O00213 710 aa10.89□□□□□ -0.67
CLK1-212ENST00000482590 NEDD1Q8NHV4 660 aa10.89□□□□□ -0.67
CLK1-212ENST00000482590 MYCP01106 439 aaPredicted RBP10.88□□□□□ -0.67
CLK1-212ENST00000482590 XAGE2Q96GT9 111 aa10.88□□□□□ -0.67
CLK1-212ENST00000482590 PHF20L1A8MW92 1017 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms