RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 ANKRD26Q9UPS8 1709 aa17.48■□□□□ 0.39
SKA3-206ENST00000475251 ATP6V1AP38606 617 aa17.48■□□□□ 0.39
SKA3-206ENST00000475251 IFNL2Q8IZJ0 200 aa17.48■□□□□ 0.39
SKA3-206ENST00000475251 PLEKHG2Q9H7P9 1386 aa17.48■□□□□ 0.39
SKA3-206ENST00000475251 WWC3Q9ULE0 1092 aa17.47■□□□□ 0.39
SKA3-206ENST00000475251 TGFB2P61812 414 aa17.46■□□□□ 0.39
SKA3-206ENST00000475251 MMP10P09238 476 aa17.45■□□□□ 0.38
SKA3-206ENST00000475251 PHKG2P15735 406 aa17.45■□□□□ 0.38
SKA3-206ENST00000475251 NLGN1Q8N2Q7 840 aa17.45■□□□□ 0.38
SKA3-206ENST00000475251 ASAP1Q9ULH1 1129 aa17.45■□□□□ 0.38
SKA3-206ENST00000475251 KIF3CO14782 793 aa17.44■□□□□ 0.38
SKA3-206ENST00000475251 ITPK1Q13572 414 aa17.44■□□□□ 0.38
SKA3-206ENST00000475251 TRAPPC3LQ5T215 181 aa17.44■□□□□ 0.38
SKA3-206ENST00000475251 SMIM5Q71RC9 77 aa17.44■□□□□ 0.38
SKA3-206ENST00000475251 EYA1Q99502 592 aa17.44■□□□□ 0.38
SKA3-206ENST00000475251 CARD14Q9BXL6 1004 aa17.44■□□□□ 0.38
SKA3-206ENST00000475251 RTCBQ9Y3I0 505 aaKnown RBP17.44■□□□□ 0.38
SKA3-206ENST00000475251 PXDNLA1KZ92 1463 aa17.43■□□□□ 0.38
SKA3-206ENST00000475251 KIF13BQ9NQT8 1826 aa17.42■□□□□ 0.38
SKA3-206ENST00000475251 HSP90AB1P08238 724 aaKnown RBP17.42■□□□□ 0.38
SKA3-206ENST00000475251 APLP1P51693 650 aa17.42■□□□□ 0.38
SKA3-206ENST00000475251 ATG3Q9NT62 314 aa17.42■□□□□ 0.38
SKA3-206ENST00000475251 ZNF831Q5JPB2 1677 aa17.42■□□□□ 0.38
SKA3-206ENST00000475251 CCDC87Q9NVE4 849 aa17.41■□□□□ 0.38
SKA3-206ENST00000475251 BCS1LQ9Y276 419 aa17.41■□□□□ 0.38
SKA3-206ENST00000475251 KDRP35968 1356 aa17.4■□□□□ 0.38
SKA3-206ENST00000475251 C10orf71Q711Q0 1435 aa17.4■□□□□ 0.38
SKA3-206ENST00000475251 ERVV-2B6SEH9 535 aa17.4■□□□□ 0.38
SKA3-206ENST00000475251 TOMM70O94826 608 aa17.4■□□□□ 0.38
SKA3-206ENST00000475251 RFC4P35249 363 aa17.39■□□□□ 0.37
SKA3-206ENST00000475251 RC3H1Q5TC82 1133 aaKnown RBP17.39■□□□□ 0.37
SKA3-206ENST00000475251 POLKQ9UBT6 870 aa17.39■□□□□ 0.37
SKA3-206ENST00000475251 PARP3Q9Y6F1 533 aa17.39■□□□□ 0.37
SKA3-206ENST00000475251 DCAF5Q96JK2 942 aa17.38■□□□□ 0.37
SKA3-206ENST00000475251 RBM42Q9BTD8 480 aaKnown RBP17.38■□□□□ 0.37
SKA3-206ENST00000475251 CNTNAP4Q9C0A0 1308 aa17.38■□□□□ 0.37
SKA3-206ENST00000475251 KIAA1551Q9HCM1 1747 aa17.38■□□□□ 0.37
SKA3-206ENST00000475251 A0A0G2JLW4 131 aa17.37■□□□□ 0.37
SKA3-206ENST00000475251 EIF4A2Q14240 407 aaKnown RBP17.37■□□□□ 0.37
SKA3-206ENST00000475251 ARHGAP27Q6ZUM4 889 aa17.37■□□□□ 0.37
SKA3-206ENST00000475251 ARHGEF1Q92888 912 aaKnown RBP17.37■□□□□ 0.37
SKA3-206ENST00000475251 C4AP0C0L4 1744 aa17.37■□□□□ 0.37
SKA3-206ENST00000475251 N4BP2Q86UW6 1770 aaPredicted RBP17.37■□□□□ 0.37
SKA3-206ENST00000475251 RPS6KA4O75676 772 aa17.36■□□□□ 0.37
SKA3-206ENST00000475251 FCHSD2O94868 740 aa17.36■□□□□ 0.37
SKA3-206ENST00000475251 PLEKHO1Q53GL0 409 aaPredicted RBP17.36■□□□□ 0.37
SKA3-206ENST00000475251 COL5A3P25940 1745 aaPredicted RBP17.35■□□□□ 0.37
SKA3-206ENST00000475251 AMOTQ4VCS5 1084 aa17.35■□□□□ 0.37
SKA3-206ENST00000475251 GYS1P13807 737 aa17.34■□□□□ 0.37
SKA3-206ENST00000475251 DPEP1P16444 411 aa17.34■□□□□ 0.37
SKA3-206ENST00000475251 CABP4P57796 275 aa17.34■□□□□ 0.37
SKA3-206ENST00000475251 C16orf71Q8IYS4 520 aaPredicted RBP17.34■□□□□ 0.37
SKA3-206ENST00000475251 SLC4A9Q96Q91 983 aa17.33■□□□□ 0.36
SKA3-206ENST00000475251 TIMELESSQ9UNS1 1208 aa17.33■□□□□ 0.36
SKA3-206ENST00000475251 TNNT2P45379 298 aaPredicted RBP17.32■□□□□ 0.36
SKA3-206ENST00000475251 RBM46Q8TBY0 533 aaKnown RBP17.32■□□□□ 0.36
SKA3-206ENST00000475251 PIM2Q9P1W9 311 aa17.32■□□□□ 0.36
SKA3-206ENST00000475251 BRCA1P38398 1863 aaKnown RBP17.32■□□□□ 0.36
SKA3-206ENST00000475251 ARFGEF1Q9Y6D6 1849 aa17.31■□□□□ 0.36
SKA3-206ENST00000475251 KDM2BQ8NHM5 1336 aa17.31■□□□□ 0.36
SKA3-206ENST00000475251 C1orf141Q5JVX7 400 aa17.31■□□□□ 0.36
SKA3-206ENST00000475251 ZNF530Q6P9A1 599 aaPredicted RBP17.31■□□□□ 0.36
SKA3-206ENST00000475251 NMRK2Q9NPI5 230 aa17.31■□□□□ 0.36
SKA3-206ENST00000475251 MTHFSP49914 203 aa17.3■□□□□ 0.36
SKA3-206ENST00000475251 C9orf131Q5VYM1 1079 aa17.3■□□□□ 0.36
SKA3-206ENST00000475251 POLR3GLQ9BT43 218 aa17.3■□□□□ 0.36
SKA3-206ENST00000475251 KDM6AO15550 1401 aaPredicted RBP17.3■□□□□ 0.36
SKA3-206ENST00000475251 DALRD3Q5D0E6 543 aaKnown RBP17.29■□□□□ 0.36
SKA3-206ENST00000475251 DNAJC5GQ8N7S2 189 aa17.29■□□□□ 0.36
SKA3-206ENST00000475251 RNF39Q9H2S5 420 aa17.29■□□□□ 0.36
SKA3-206ENST00000475251 WDR90Q96KV7 1748 aa17.28■□□□□ 0.36
SKA3-206ENST00000475251 FSTL1Q12841 308 aa17.28■□□□□ 0.36
SKA3-206ENST00000475251 USP42Q9H9J4 1324 aaKnown RBP17.27■□□□□ 0.36
SKA3-206ENST00000475251 PTCD1O75127 700 aaKnown RBP17.27■□□□□ 0.36
SKA3-206ENST00000475251 KCNA3P22001 575 aa17.27■□□□□ 0.36
SKA3-206ENST00000475251 CRKLP46109 303 aaKnown RBP17.27■□□□□ 0.36
SKA3-206ENST00000475251 MYH14Q7Z406 1995 aaKnown RBP17.26■□□□□ 0.35
SKA3-206ENST00000475251 NFATC2IPQ8NCF5 419 aa17.25■□□□□ 0.35
SKA3-206ENST00000475251 RNF181Q9P0P0 153 aa17.25■□□□□ 0.35
SKA3-206ENST00000475251 ZC3H4Q9UPT8 1303 aaKnown RBP17.24■□□□□ 0.35
SKA3-206ENST00000475251 TNRC6CQ9HCJ0 1690 aaKnown RBP17.24■□□□□ 0.35
SKA3-206ENST00000475251 FKBP8Q14318 412 aa17.24■□□□□ 0.35
SKA3-206ENST00000475251 KCPQ6ZWJ8 1503 aa17.23■□□□□ 0.35
SKA3-206ENST00000475251 ZPR1O75312 459 aa17.23■□□□□ 0.35
SKA3-206ENST00000475251 DDR1Q08345 913 aa17.23■□□□□ 0.35
SKA3-206ENST00000475251 KLRG1Q96E93 195 aa17.23■□□□□ 0.35
SKA3-206ENST00000475251 SRP68Q9UHB9 627 aaKnown RBP17.23■□□□□ 0.35
SKA3-206ENST00000475251 TJP1Q07157 1748 aa17.22■□□□□ 0.35
SKA3-206ENST00000475251 POLRMTO00411 1230 aaKnown RBP17.21■□□□□ 0.35
SKA3-206ENST00000475251 TRIM26Q12899 539 aaPredicted RBP17.21■□□□□ 0.35
SKA3-206ENST00000475251 SULT6B1Q6IMI4 303 aa17.21■□□□□ 0.35
SKA3-206ENST00000475251 MORC1Q86VD1 984 aa17.21■□□□□ 0.35
SKA3-206ENST00000475251 JMYQ8N9B5 988 aa17.21■□□□□ 0.35
SKA3-206ENST00000475251 SMC1BQ8NDV3 1235 aa17.21■□□□□ 0.35
SKA3-206ENST00000475251 PANK3Q9H999 370 aa17.21■□□□□ 0.35
SKA3-206ENST00000475251 SCN11AQ9UI33 1791 aa17.2■□□□□ 0.34
SKA3-206ENST00000475251 TM4SF1P30408 202 aa17.2■□□□□ 0.34
SKA3-206ENST00000475251 CHRNA5P30532 468 aa17.2■□□□□ 0.34
SKA3-206ENST00000475251 AKAP4Q5JQC9 854 aa17.2■□□□□ 0.34
SKA3-206ENST00000475251 AEBP1Q8IUX7 1158 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms