RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 DCAF5Q96JK2 942 aa29.52■■■□□ 2.32
CPNE1-220ENST00000458038 ATG3Q9NT62 314 aa29.52■■■□□ 2.32
CPNE1-220ENST00000458038 AMOTQ4VCS5 1084 aa29.51■■■□□ 2.31
CPNE1-220ENST00000458038 GIGYF1O75420 1035 aaPredicted RBP29.5■■■□□ 2.31
CPNE1-220ENST00000458038 GNPATO15228 680 aa29.49■■■□□ 2.31
CPNE1-220ENST00000458038 ITPK1Q13572 414 aa29.49■■■□□ 2.31
CPNE1-220ENST00000458038 ZNF831Q5JPB2 1677 aa29.48■■■□□ 2.31
CPNE1-220ENST00000458038 MORC1Q86VD1 984 aa29.47■■■□□ 2.31
CPNE1-220ENST00000458038 SENP3-EIF4A1A0A087X0R7 540 aa29.45■■■□□ 2.31
CPNE1-220ENST00000458038 RC3H1Q5TC82 1133 aaKnown RBP29.45■■■□□ 2.31
CPNE1-220ENST00000458038 RTCBQ9Y3I0 505 aaKnown RBP29.44■■■□□ 2.3
CPNE1-220ENST00000458038 KNSTRNQ9Y448 316 aa29.44■■■□□ 2.3
CPNE1-220ENST00000458038 KDRP35968 1356 aa29.43■■■□□ 2.3
CPNE1-220ENST00000458038 ZNF530Q6P9A1 599 aaPredicted RBP29.43■■■□□ 2.3
CPNE1-220ENST00000458038 SMIM5Q71RC9 77 aa29.43■■■□□ 2.3
CPNE1-220ENST00000458038 ADRA2BP18089 450 aa29.42■■■□□ 2.3
CPNE1-220ENST00000458038 CABP4P57796 275 aa29.42■■■□□ 2.3
CPNE1-220ENST00000458038 TRAPPC3LQ5T215 181 aa29.42■■■□□ 2.3
CPNE1-220ENST00000458038 CCER1Q8TC90 406 aaPredicted RBP29.42■■■□□ 2.3
CPNE1-220ENST00000458038 C1orf141Q5JVX7 400 aa29.41■■■□□ 2.3
CPNE1-220ENST00000458038 RBM42Q9BTD8 480 aaKnown RBP29.41■■■□□ 2.3
CPNE1-220ENST00000458038 NLGN1Q8N2Q7 840 aa29.4■■■□□ 2.3
CPNE1-220ENST00000458038 MTHFSP49914 203 aa29.39■■■□□ 2.3
CPNE1-220ENST00000458038 CNTNAP4Q9C0A0 1308 aa29.38■■■□□ 2.29
CPNE1-220ENST00000458038 MMP10P09238 476 aa29.37■■■□□ 2.29
CPNE1-220ENST00000458038 SLC4A9Q96Q91 983 aa29.37■■■□□ 2.29
CPNE1-220ENST00000458038 KDM6AO15550 1401 aaPredicted RBP29.36■■■□□ 2.29
CPNE1-220ENST00000458038 ATP10DQ9P241 1426 aa29.36■■■□□ 2.29
CPNE1-220ENST00000458038 COL5A3P25940 1745 aaPredicted RBP29.35■■■□□ 2.29
CPNE1-220ENST00000458038 RPS6KA4O75676 772 aa29.35■■■□□ 2.29
CPNE1-220ENST00000458038 TGFB2P61812 414 aa29.34■■■□□ 2.29
CPNE1-220ENST00000458038 SULT6B1Q6IMI4 303 aa29.34■■■□□ 2.29
CPNE1-220ENST00000458038 RFC4P35249 363 aa29.33■■■□□ 2.29
CPNE1-220ENST00000458038 AEBP1Q8IUX7 1158 aa29.33■■■□□ 2.29
CPNE1-220ENST00000458038 ARHGEF1Q92888 912 aaKnown RBP29.33■■■□□ 2.29
CPNE1-220ENST00000458038 GPBP1L1Q9HC44 474 aaPredicted RBP29.33■■■□□ 2.29
CPNE1-220ENST00000458038 KIF13BQ9NQT8 1826 aa29.33■■■□□ 2.29
CPNE1-220ENST00000458038 IL13P35225 146 aa29.32■■■□□ 2.28
CPNE1-220ENST00000458038 ADCY9O60503 1353 aa29.31■■■□□ 2.28
CPNE1-220ENST00000458038 NFATC2IPQ8NCF5 419 aa29.31■■■□□ 2.28
CPNE1-220ENST00000458038 MYH14Q7Z406 1995 aaKnown RBP29.31■■■□□ 2.28
CPNE1-220ENST00000458038 CEP350Q5VT06 3117 aa29.3■■■□□ 2.28
CPNE1-220ENST00000458038 AMER1Q5JTC6 1135 aaPredicted RBP29.29■■■□□ 2.28
CPNE1-220ENST00000458038 PTCD1O75127 700 aaKnown RBP29.28■■■□□ 2.28
CPNE1-220ENST00000458038 GYS1P13807 737 aa29.28■■■□□ 2.28
CPNE1-220ENST00000458038 CCDC87Q9NVE4 849 aa29.28■■■□□ 2.28
CPNE1-220ENST00000458038 SCN11AQ9UI33 1791 aa29.27■■■□□ 2.28
CPNE1-220ENST00000458038 AKAP4Q5JQC9 854 aa29.27■■■□□ 2.28
CPNE1-220ENST00000458038 PARP3Q9Y6F1 533 aa29.26■■■□□ 2.27
CPNE1-220ENST00000458038 CICQ96RK0 1608 aaPredicted RBP29.26■■■□□ 2.27
CPNE1-220ENST00000458038 PXDNLA1KZ92 1463 aa29.25■■■□□ 2.27
CPNE1-220ENST00000458038 CRKLP46109 303 aaKnown RBP29.24■■■□□ 2.27
CPNE1-220ENST00000458038 C10orf71Q711Q0 1435 aa29.24■■■□□ 2.27
CPNE1-220ENST00000458038 WWC3Q9ULE0 1092 aa29.24■■■□□ 2.27
CPNE1-220ENST00000458038 C4AP0C0L4 1744 aa29.23■■■□□ 2.27
CPNE1-220ENST00000458038 KIF7Q2M1P5 1343 aa29.21■■■□□ 2.27
CPNE1-220ENST00000458038 N4BP2Q86UW6 1770 aaPredicted RBP29.21■■■□□ 2.27
CPNE1-220ENST00000458038 KIAA1551Q9HCM1 1747 aa29.21■■■□□ 2.27
CPNE1-220ENST00000458038 SLC52A2Q9HAB3 445 aa29.21■■■□□ 2.27
CPNE1-220ENST00000458038 A0A0G2JLW4 131 aa29.2■■■□□ 2.26
CPNE1-220ENST00000458038 BCS1LQ9Y276 419 aa29.19■■■□□ 2.26
CPNE1-220ENST00000458038 ZNF526Q8TF50 670 aaPredicted RBP29.18■■■□□ 2.26
CPNE1-220ENST00000458038 USP42Q9H9J4 1324 aaKnown RBP29.18■■■□□ 2.26
CPNE1-220ENST00000458038 TJP1Q07157 1748 aa29.17■■■□□ 2.26
CPNE1-220ENST00000458038 PER1O15534 1290 aaPredicted RBP29.16■■■□□ 2.26
CPNE1-220ENST00000458038 RNMTO43148 476 aaKnown RBP29.15■■■□□ 2.26
CPNE1-220ENST00000458038 DIAPH1O60610 1272 aaKnown RBP29.15■■■□□ 2.26
CPNE1-220ENST00000458038 DPEP1P16444 411 aa29.15■■■□□ 2.26
CPNE1-220ENST00000458038 INTS5Q6P9B9 1019 aaKnown RBP29.15■■■□□ 2.26
CPNE1-220ENST00000458038 BRCA1P38398 1863 aaKnown RBP29.14■■■□□ 2.26
CPNE1-220ENST00000458038 LGR6Q9HBX8 967 aa29.14■■■□□ 2.26
CPNE1-220ENST00000458038 VIRMAQ69YN4 1812 aaKnown RBP29.13■■■□□ 2.25
CPNE1-220ENST00000458038 FCHSD2O94868 740 aa29.13■■■□□ 2.25
CPNE1-220ENST00000458038 HMOX1P09601 288 aa29.13■■■□□ 2.25
CPNE1-220ENST00000458038 MRC1P22897 1456 aa29.12■■■□□ 2.25
CPNE1-220ENST00000458038 ZPR1O75312 459 aa29.12■■■□□ 2.25
CPNE1-220ENST00000458038 FKBP8Q14318 412 aa29.12■■■□□ 2.25
CPNE1-220ENST00000458038 ARHGAP27Q6ZUM4 889 aa29.12■■■□□ 2.25
CPNE1-220ENST00000458038 PIM2Q9P1W9 311 aa29.12■■■□□ 2.25
CPNE1-220ENST00000458038 SRP68Q9UHB9 627 aaKnown RBP29.12■■■□□ 2.25
CPNE1-220ENST00000458038 DNAJC10Q8IXB1 793 aa29.11■■■□□ 2.25
CPNE1-220ENST00000458038 ARFGEF1Q9Y6D6 1849 aa29.1■■■□□ 2.25
CPNE1-220ENST00000458038 HSPA6P17066 643 aa29.1■■■□□ 2.25
CPNE1-220ENST00000458038 KCNA3P22001 575 aa29.1■■■□□ 2.25
CPNE1-220ENST00000458038 VSIG10Q8N0Z9 540 aa29.1■■■□□ 2.25
CPNE1-220ENST00000458038 NPC1L1Q9UHC9 1359 aa29.1■■■□□ 2.25
CPNE1-220ENST00000458038 TM4SF1P30408 202 aa29.09■■■□□ 2.25
CPNE1-220ENST00000458038 CC2D1BQ5T0F9 858 aaKnown RBP29.09■■■□□ 2.25
CPNE1-220ENST00000458038 KIF3CO14782 793 aa29.08■■■□□ 2.25
CPNE1-220ENST00000458038 CYP19A1P11511 503 aaPredicted RBP29.08■■■□□ 2.25
CPNE1-220ENST00000458038 MTHFSDQ2M296 383 aaKnown RBP29.08■■■□□ 2.25
CPNE1-220ENST00000458038 ADAMTS7Q9UKP4 1686 aa29.08■■■□□ 2.25
CPNE1-220ENST00000458038 SOS1Q07889 1333 aaPredicted RBP29.07■■■□□ 2.24
CPNE1-220ENST00000458038 DDR1Q08345 913 aa29.07■■■□□ 2.24
CPNE1-220ENST00000458038 SLC39A6Q13433 755 aa29.06■■■□□ 2.24
CPNE1-220ENST00000458038 DALRD3Q5D0E6 543 aaKnown RBP29.06■■■□□ 2.24
CPNE1-220ENST00000458038 POLRMTO00411 1230 aaKnown RBP29.05■■■□□ 2.24
CPNE1-220ENST00000458038 NARFQ9UHQ1 456 aa29.05■■■□□ 2.24
CPNE1-220ENST00000458038 USPL1Q5W0Q7 1092 aa29.04■■■□□ 2.24
CPNE1-220ENST00000458038 KCPQ6ZWJ8 1503 aa29.03■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 158 ms