RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PLEKHO1Q53GL0 409 aaPredicted RBP19.84■□□□□ 0.77
SDC1-204ENST00000429035 RBM42Q9BTD8 480 aaKnown RBP19.84■□□□□ 0.77
SDC1-204ENST00000429035 ATG3Q9NT62 314 aa19.84■□□□□ 0.77
SDC1-204ENST00000429035 KNSTRNQ9Y448 316 aa19.84■□□□□ 0.77
SDC1-204ENST00000429035 COL5A3P25940 1745 aaPredicted RBP19.84■□□□□ 0.77
SDC1-204ENST00000429035 GRIN3BO60391 1043 aa19.83■□□□□ 0.77
SDC1-204ENST00000429035 HSP90AB1P08238 724 aaKnown RBP19.83■□□□□ 0.77
SDC1-204ENST00000429035 PLEKHG2Q9H7P9 1386 aa19.83■□□□□ 0.76
SDC1-204ENST00000429035 AEBP1Q8IUX7 1158 aa19.82■□□□□ 0.76
SDC1-204ENST00000429035 CD2APQ9Y5K6 639 aa19.82■□□□□ 0.76
SDC1-204ENST00000429035 KDM6AO15550 1401 aaPredicted RBP19.82■□□□□ 0.76
SDC1-204ENST00000429035 KDRP35968 1356 aa19.82■□□□□ 0.76
SDC1-204ENST00000429035 C1orf141Q5JVX7 400 aa19.81■□□□□ 0.76
SDC1-204ENST00000429035 VIRMAQ69YN4 1812 aaKnown RBP19.81■□□□□ 0.76
SDC1-204ENST00000429035 C4AP0C0L4 1744 aa19.8■□□□□ 0.76
SDC1-204ENST00000429035 SENP3-EIF4A1A0A087X0R7 540 aa19.8■□□□□ 0.76
SDC1-204ENST00000429035 GIGYF1O75420 1035 aaPredicted RBP19.8■□□□□ 0.76
SDC1-204ENST00000429035 CABP4P57796 275 aa19.8■□□□□ 0.76
SDC1-204ENST00000429035 DCAF5Q96JK2 942 aa19.8■□□□□ 0.76
SDC1-204ENST00000429035 ZNF831Q5JPB2 1677 aa19.8■□□□□ 0.76
SDC1-204ENST00000429035 AMOTQ4VCS5 1084 aa19.79■□□□□ 0.76
SDC1-204ENST00000429035 SULT6B1Q6IMI4 303 aa19.79■□□□□ 0.76
SDC1-204ENST00000429035 SCN11AQ9UI33 1791 aa19.79■□□□□ 0.76
SDC1-204ENST00000429035 CICQ96RK0 1608 aaPredicted RBP19.78■□□□□ 0.76
SDC1-204ENST00000429035 ERVV-2B6SEH9 535 aa19.78■□□□□ 0.76
SDC1-204ENST00000429035 C1QTNF8P60827 252 aa19.78■□□□□ 0.76
SDC1-204ENST00000429035 RTCBQ9Y3I0 505 aaKnown RBP19.78■□□□□ 0.76
SDC1-204ENST00000429035 MTHFSP49914 203 aa19.77■□□□□ 0.76
SDC1-204ENST00000429035 N4BP2Q86UW6 1770 aaPredicted RBP19.77■□□□□ 0.76
SDC1-204ENST00000429035 MYH14Q7Z406 1995 aaKnown RBP19.77■□□□□ 0.75
SDC1-204ENST00000429035 MMP10P09238 476 aa19.76■□□□□ 0.75
SDC1-204ENST00000429035 TJP1Q07157 1748 aa19.76■□□□□ 0.75
SDC1-204ENST00000429035 ATP10DQ9P241 1426 aa19.76■□□□□ 0.75
SDC1-204ENST00000429035 KIF7Q2M1P5 1343 aa19.76■□□□□ 0.75
SDC1-204ENST00000429035 PTCD1O75127 700 aaKnown RBP19.75■□□□□ 0.75
SDC1-204ENST00000429035 SLC4A9Q96Q91 983 aa19.75■□□□□ 0.75
SDC1-204ENST00000429035 KIF13BQ9NQT8 1826 aa19.74■□□□□ 0.75
SDC1-204ENST00000429035 CNGB1Q14028 1251 aaPredicted RBP19.74■□□□□ 0.75
SDC1-204ENST00000429035 TRAPPC3LQ5T215 181 aa19.74■□□□□ 0.75
SDC1-204ENST00000429035 CNTNAP4Q9C0A0 1308 aa19.73■□□□□ 0.75
SDC1-204ENST00000429035 IL13P35225 146 aa19.72■□□□□ 0.75
SDC1-204ENST00000429035 AMER1Q5JTC6 1135 aaPredicted RBP19.72■□□□□ 0.75
SDC1-204ENST00000429035 ZNF526Q8TF50 670 aaPredicted RBP19.72■□□□□ 0.75
SDC1-204ENST00000429035 KIAA1551Q9HCM1 1747 aa19.72■□□□□ 0.75
SDC1-204ENST00000429035 HMOX1P09601 288 aa19.71■□□□□ 0.75
SDC1-204ENST00000429035 RFC4P35249 363 aa19.71■□□□□ 0.75
SDC1-204ENST00000429035 CC2D1BQ5T0F9 858 aaKnown RBP19.71■□□□□ 0.75
SDC1-204ENST00000429035 NFATC2IPQ8NCF5 419 aa19.7■□□□□ 0.74
SDC1-204ENST00000429035 ARHGEF1Q92888 912 aaKnown RBP19.7■□□□□ 0.74
SDC1-204ENST00000429035 PXDNLA1KZ92 1463 aa19.7■□□□□ 0.74
SDC1-204ENST00000429035 ADRA2BP18089 450 aa19.69■□□□□ 0.74
SDC1-204ENST00000429035 C10orf71Q711Q0 1435 aa19.68■□□□□ 0.74
SDC1-204ENST00000429035 RPS6KA4O75676 772 aa19.68■□□□□ 0.74
SDC1-204ENST00000429035 CRKLP46109 303 aaKnown RBP19.68■□□□□ 0.74
SDC1-204ENST00000429035 RC3H1Q5TC82 1133 aaKnown RBP19.68■□□□□ 0.74
SDC1-204ENST00000429035 GYS1P13807 737 aa19.67■□□□□ 0.74
SDC1-204ENST00000429035 AKAP4Q5JQC9 854 aa19.67■□□□□ 0.74
SDC1-204ENST00000429035 NLGN1Q8N2Q7 840 aa19.67■□□□□ 0.74
SDC1-204ENST00000429035 GPBP1L1Q9HC44 474 aaPredicted RBP19.67■□□□□ 0.74
SDC1-204ENST00000429035 CCDC87Q9NVE4 849 aa19.67■□□□□ 0.74
SDC1-204ENST00000429035 PARP3Q9Y6F1 533 aa19.67■□□□□ 0.74
SDC1-204ENST00000429035 BCS1LQ9Y276 419 aa19.66■□□□□ 0.74
SDC1-204ENST00000429035 BRCA1P38398 1863 aaKnown RBP19.66■□□□□ 0.74
SDC1-204ENST00000429035 ADCY9O60503 1353 aa19.66■□□□□ 0.74
SDC1-204ENST00000429035 SRP68Q9UHB9 627 aaKnown RBP19.65■□□□□ 0.74
SDC1-204ENST00000429035 MRC1P22897 1456 aa19.65■□□□□ 0.74
SDC1-204ENST00000429035 DIAPH1O60610 1272 aaKnown RBP19.64■□□□□ 0.73
SDC1-204ENST00000429035 SLC52A2Q9HAB3 445 aa19.64■□□□□ 0.73
SDC1-204ENST00000429035 A0A0G2JLW4 131 aa19.63■□□□□ 0.73
SDC1-204ENST00000429035 LGR6Q9HBX8 967 aa19.63■□□□□ 0.73
SDC1-204ENST00000429035 RNMTO43148 476 aaKnown RBP19.62■□□□□ 0.73
SDC1-204ENST00000429035 SLC39A6Q13433 755 aa19.62■□□□□ 0.73
SDC1-204ENST00000429035 DNAJC10Q8IXB1 793 aa19.62■□□□□ 0.73
SDC1-204ENST00000429035 USP42Q9H9J4 1324 aaKnown RBP19.61■□□□□ 0.73
SDC1-204ENST00000429035 U2SURPO15042 1029 aaKnown RBP19.61■□□□□ 0.73
SDC1-204ENST00000429035 TGFB2P61812 414 aa19.61■□□□□ 0.73
SDC1-204ENST00000429035 ADAMTS7Q9UKP4 1686 aa19.61■□□□□ 0.73
SDC1-204ENST00000429035 KCPQ6ZWJ8 1503 aa19.61■□□□□ 0.73
SDC1-204ENST00000429035 ARFGEF1Q9Y6D6 1849 aa19.6■□□□□ 0.73
SDC1-204ENST00000429035 FCHSD2O94868 740 aa19.6■□□□□ 0.73
SDC1-204ENST00000429035 DPEP1P16444 411 aa19.6■□□□□ 0.73
SDC1-204ENST00000429035 MTHFSDQ2M296 383 aaKnown RBP19.6■□□□□ 0.73
SDC1-204ENST00000429035 COL3A1P02461 1466 aaPredicted RBP19.6■□□□□ 0.73
SDC1-204ENST00000429035 UBR2Q8IWV8 1755 aa19.6■□□□□ 0.73
SDC1-204ENST00000429035 FKBP8Q14318 412 aa19.59■□□□□ 0.73
SDC1-204ENST00000429035 PER1O15534 1290 aaPredicted RBP19.58■□□□□ 0.72
SDC1-204ENST00000429035 AFDNP55196 1824 aaKnown RBP19.58■□□□□ 0.72
SDC1-204ENST00000429035 ZPR1O75312 459 aa19.57■□□□□ 0.72
SDC1-204ENST00000429035 DDR1Q08345 913 aa19.57■□□□□ 0.72
SDC1-204ENST00000429035 INTS5Q6P9B9 1019 aaKnown RBP19.57■□□□□ 0.72
SDC1-204ENST00000429035 ARHGAP27Q6ZUM4 889 aa19.57■□□□□ 0.72
SDC1-204ENST00000429035 COL15A1P39059 1388 aa19.57■□□□□ 0.72
SDC1-204ENST00000429035 USPL1Q5W0Q7 1092 aa19.56■□□□□ 0.72
SDC1-204ENST00000429035 SOS1Q07889 1333 aaPredicted RBP19.55■□□□□ 0.72
SDC1-204ENST00000429035 TTC5Q8N0Z6 440 aa19.55■□□□□ 0.72
SDC1-204ENST00000429035 ZBTB1Q9Y2K1 713 aa19.55■□□□□ 0.72
SDC1-204ENST00000429035 SIPA1L3O60292 1781 aaPredicted RBP19.55■□□□□ 0.72
SDC1-204ENST00000429035 CYP19A1P11511 503 aaPredicted RBP19.53■□□□□ 0.72
SDC1-204ENST00000429035 NPC1L1Q9UHC9 1359 aa19.53■□□□□ 0.72
SDC1-204ENST00000429035 POLRMTO00411 1230 aaKnown RBP19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms