RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 MRE11P49959 708 aa20.43■□□□□ 0.86
PHRF1-202ENST00000413872 DHX8Q14562 1220 aaKnown RBP20.43■□□□□ 0.86
PHRF1-202ENST00000413872 NFKBIBQ15653 356 aa20.43■□□□□ 0.86
PHRF1-202ENST00000413872 JAKMIP1Q96N16 626 aaKnown RBP20.43■□□□□ 0.86
PHRF1-202ENST00000413872 RALGAPBQ86X10 1494 aa20.43■□□□□ 0.86
PHRF1-202ENST00000413872 FIBPO43427 364 aa20.43■□□□□ 0.86
PHRF1-202ENST00000413872 LARP1BQ659C4 914 aaKnown RBP20.43■□□□□ 0.86
PHRF1-202ENST00000413872 BACH2Q9BYV9 841 aa20.43■□□□□ 0.86
PHRF1-202ENST00000413872 DACH1Q9UI36 760 aa20.43■□□□□ 0.86
PHRF1-202ENST00000413872 TMEM132AQ24JP5 1023 aa20.42■□□□□ 0.86
PHRF1-202ENST00000413872 SLF2Q8IX21 1173 aa20.42■□□□□ 0.86
PHRF1-202ENST00000413872 NAP1L1P55209 391 aaKnown RBP20.42■□□□□ 0.86
PHRF1-202ENST00000413872 MAP3K12Q12852 859 aa20.42■□□□□ 0.86
PHRF1-202ENST00000413872 FLIIQ13045 1269 aa20.42■□□□□ 0.86
PHRF1-202ENST00000413872 FAM13BQ9NYF5 915 aa20.42■□□□□ 0.86
PHRF1-202ENST00000413872 STIM1Q13586 685 aa20.42■□□□□ 0.86
PHRF1-202ENST00000413872 DISP3Q9P2K9 1392 aa20.42■□□□□ 0.86
PHRF1-202ENST00000413872 STK3Q13188 491 aa20.41■□□□□ 0.86
PHRF1-202ENST00000413872 RPGRQ92834 1020 aaKnown RBP20.41■□□□□ 0.86
PHRF1-202ENST00000413872 SNRPA1P09661 255 aaKnown RBP20.41■□□□□ 0.86
PHRF1-202ENST00000413872 NUTM1Q86Y26 1132 aa20.41■□□□□ 0.86
PHRF1-202ENST00000413872 PIK3R4Q99570 1358 aa20.41■□□□□ 0.86
PHRF1-202ENST00000413872 CIZ1Q9ULV3 898 aaPredicted RBP20.41■□□□□ 0.86
PHRF1-202ENST00000413872 TRAPPC8Q9Y2L5 1435 aa20.4■□□□□ 0.86
PHRF1-202ENST00000413872 TRAK2O60296 914 aa20.4■□□□□ 0.86
PHRF1-202ENST00000413872 SMARCE1Q969G3 411 aa20.4■□□□□ 0.86
PHRF1-202ENST00000413872 CFAP45Q9UL16 551 aa20.4■□□□□ 0.86
PHRF1-202ENST00000413872 ANKIB1Q9P2G1 1089 aa20.4■□□□□ 0.86
PHRF1-202ENST00000413872 CDC5LQ99459 802 aaKnown RBP20.4■□□□□ 0.86
PHRF1-202ENST00000413872 PRPF40AO75400 957 aaKnown RBP20.39■□□□□ 0.86
PHRF1-202ENST00000413872 SHANK2Q9UPX8 1470 aa20.39■□□□□ 0.85
PHRF1-202ENST00000413872 AK7Q96M32 723 aa20.39■□□□□ 0.85
PHRF1-202ENST00000413872 ABCC2Q92887 1545 aa20.39■□□□□ 0.85
PHRF1-202ENST00000413872 CCDC173Q0VFZ6 552 aa20.39■□□□□ 0.85
PHRF1-202ENST00000413872 PPP1R42Q7Z4L9 355 aa20.39■□□□□ 0.85
PHRF1-202ENST00000413872 CCDC39Q9UFE4 941 aa20.39■□□□□ 0.85
PHRF1-202ENST00000413872 NASPP49321 788 aaPredicted RBP20.38■□□□□ 0.85
PHRF1-202ENST00000413872 USP5P45974 858 aa20.38■□□□□ 0.85
PHRF1-202ENST00000413872 ME1P48163 572 aa20.38■□□□□ 0.85
PHRF1-202ENST00000413872 TSPY26PQ9H489 355 aa20.38■□□□□ 0.85
PHRF1-202ENST00000413872 PPIP5K1Q6PFW1 1433 aa20.38■□□□□ 0.85
PHRF1-202ENST00000413872 CAVIN1Q6NZI2 390 aaKnown RBP20.38■□□□□ 0.85
PHRF1-202ENST00000413872 STK11IPQ8N1F8 1099 aa20.38■□□□□ 0.85
PHRF1-202ENST00000413872 BMP2KQ9NSY1 1161 aaPredicted RBP20.38■□□□□ 0.85
PHRF1-202ENST00000413872 CWC25Q9NXE8 425 aaPredicted RBP20.38■□□□□ 0.85
PHRF1-202ENST00000413872 DZIP1Q86YF9 867 aaKnown RBP20.38■□□□□ 0.85
PHRF1-202ENST00000413872 TRIM5Q9C035 493 aa20.38■□□□□ 0.85
PHRF1-202ENST00000413872 PDILTQ8N807 584 aa20.37■□□□□ 0.85
PHRF1-202ENST00000413872 C19orf44Q9H6X5 657 aa20.37■□□□□ 0.85
PHRF1-202ENST00000413872 TCOF1Q13428 1488 aaKnown RBP20.37■□□□□ 0.85
PHRF1-202ENST00000413872 CCDC196A0A1B0GTZ2 297 aa20.37■□□□□ 0.85
PHRF1-202ENST00000413872 HMGB1P09429 215 aaKnown RBP20.36■□□□□ 0.85
PHRF1-202ENST00000413872 RDXP35241 583 aaKnown RBP20.36■□□□□ 0.85
PHRF1-202ENST00000413872 CCP110O43303 1012 aa20.36■□□□□ 0.85
PHRF1-202ENST00000413872 NAPBQ9H115 298 aa20.36■□□□□ 0.85
PHRF1-202ENST00000413872 LRRFIP2Q9Y608 721 aaKnown RBP20.36■□□□□ 0.85
PHRF1-202ENST00000413872 WDR62O43379 1518 aa20.36■□□□□ 0.85
PHRF1-202ENST00000413872 POLR3DP05423 398 aaPredicted RBP20.36■□□□□ 0.85
PHRF1-202ENST00000413872 ZCRB1Q8TBF4 217 aaKnown RBP20.36■□□□□ 0.85
PHRF1-202ENST00000413872 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.35■□□□□ 0.85
PHRF1-202ENST00000413872 MNS1Q8NEH6 495 aa20.35■□□□□ 0.85
PHRF1-202ENST00000413872 SMARCC1Q92922 1105 aaPredicted RBP20.35■□□□□ 0.85
PHRF1-202ENST00000413872 F6X3S4 739 aa20.35■□□□□ 0.85
PHRF1-202ENST00000413872 CEBPZQ03701 1054 aaKnown RBP20.35■□□□□ 0.85
PHRF1-202ENST00000413872 CRACR2BQ8N4Y2 399 aaPredicted RBP20.35■□□□□ 0.85
PHRF1-202ENST00000413872 RNF41Q9H4P4 317 aaPredicted RBP20.35■□□□□ 0.85
PHRF1-202ENST00000413872 CCDC192P0DO97 292 aa20.35■□□□□ 0.85
PHRF1-202ENST00000413872 UBAP1LF5GYI3 381 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 CHRNA2Q15822 529 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 ZBTB3Q9H5J0 574 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 EIF2AK4Q9P2K8 1649 aaKnown RBP20.34■□□□□ 0.85
PHRF1-202ENST00000413872 CDR1P51861 262 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 BOLA2Q9H3K6 86 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 PRAG1Q86YV5 1406 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 SPINK5Q9NQ38 1064 aaPredicted RBP20.34■□□□□ 0.85
PHRF1-202ENST00000413872 LDHCP07864 332 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 TTF1Q15361 905 aaPredicted RBP20.34■□□□□ 0.85
PHRF1-202ENST00000413872 SYCP1Q15431 976 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 MKNK2Q9HBH9 465 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 CEP131Q9UPN4 1083 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 MAP3K2Q9Y2U5 619 aa20.34■□□□□ 0.85
PHRF1-202ENST00000413872 ASXL1Q8IXJ9 1541 aa20.33■□□□□ 0.85
PHRF1-202ENST00000413872 ARGLU1Q9NWB6 273 aaPredicted RBP20.33■□□□□ 0.85
PHRF1-202ENST00000413872 WDHD1O75717 1129 aaPredicted RBP20.33■□□□□ 0.84
PHRF1-202ENST00000413872 SMC2O95347 1197 aa20.33■□□□□ 0.84
PHRF1-202ENST00000413872 ACBD3Q9H3P7 528 aa20.33■□□□□ 0.84
PHRF1-202ENST00000413872 MBIPQ9NS73 344 aa20.33■□□□□ 0.84
PHRF1-202ENST00000413872 ARHGAP45Q92619 1136 aa20.32■□□□□ 0.84
PHRF1-202ENST00000413872 DDX46Q7L014 1031 aaKnown RBP20.32■□□□□ 0.84
PHRF1-202ENST00000413872 CASTP20810 708 aaKnown RBP20.32■□□□□ 0.84
PHRF1-202ENST00000413872 TNMDQ9H2S6 317 aa20.32■□□□□ 0.84
PHRF1-202ENST00000413872 LUC7LQ9NQ29 371 aaKnown RBP20.32■□□□□ 0.84
PHRF1-202ENST00000413872 ZNHIT6Q9NWK9 470 aaKnown RBP20.32■□□□□ 0.84
PHRF1-202ENST00000413872 EIF4G3O43432 1585 aaKnown RBP20.31■□□□□ 0.84
PHRF1-202ENST00000413872 TRIM27P14373 513 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 RNF214Q8ND24 703 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 TBX22Q9Y458 520 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 IQCA1Q86XH1 822 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 ZNF76P36508 570 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 AKAP4Q5JQC9 854 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms