RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 ESF1Q9H501 851 aaKnown RBP9.4□□□□□ -0.9
HMGB1P13-201ENST00000406019 ESCO1Q5FWF5 840 aa9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 KANK4Q5T7N3 995 aaPredicted RBP9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 NBPF10Q6P3W6 841 aaKnown RBP9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 PRICKLE2Q7Z3G6 844 aa9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 NBPF15Q8N660 670 aa9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 RHOQP17081 205 aa9.38□□□□□ -0.91
HMGB1P13-201ENST00000406019 EPHA4P54764 986 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 POU4F2Q12837 409 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 MTFR1Q15390 333 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 WDR44Q5JSH3 913 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 CUEDC1Q9NWM3 386 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 MKRN1Q9UHC7 482 aaKnown RBP9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 IQSEC3Q9UPP2 1182 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 USP3Q9Y6I4 520 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 PPARGC1BQ86YN6 1023 aaKnown RBP9.36□□□□□ -0.91
HMGB1P13-201ENST00000406019 NANOS1Q8WY41 292 aaKnown RBP9.36□□□□□ -0.91
HMGB1P13-201ENST00000406019 ZNF358Q9NW07 568 aa9.36□□□□□ -0.91
HMGB1P13-201ENST00000406019 ITGA6P23229 1130 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 SMTNP53814 917 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 SLC27A3Q5K4L6 730 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 TRIM50Q86XT4 487 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 SIX5Q8N196 739 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 ZSCAN10Q96SZ4 725 aaPredicted RBP9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 WIPF1O43516 503 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 FOXK2Q01167 660 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 TLR1Q15399 786 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 C4orf17Q53FE4 359 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 OGFOD1Q8N543 542 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 C1orf115Q9H7X2 142 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 THBS1P07996 1170 aa9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 SRPK2P78362 688 aaKnown RBP9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 TAS1R3Q7RTX0 852 aa9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 LARGE2Q8N3Y3 721 aa9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 GPR161Q8N6U8 529 aaKnown RBP9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 DNAAF2Q9NVR5 837 aaKnown RBP9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 DYRK1BQ9Y463 629 aa9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 GMPRP36959 345 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 CRTC2Q53ET0 693 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 TPCN2Q8NHX9 752 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 RHBDD1Q8TEB9 315 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 SLC16A10Q8TF71 515 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 IRF7Q92985 503 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 SERTAD1Q9UHV2 236 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 A6NJY4 79 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 CDK2AP1O14519 115 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 LMOD1P29536 600 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 ATP1A2P50993 1020 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 PTK7Q13308 1070 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 CCDC102BQ68D86 513 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 SCHIP1Q9P0W5 487 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 M0R2N6 131 aa9.3□□□□□ -0.92
HMGB1P13-201ENST00000406019 LORP23490 312 aaPredicted RBP9.3□□□□□ -0.92
HMGB1P13-201ENST00000406019 KRT76Q01546 638 aa9.3□□□□□ -0.92
HMGB1P13-201ENST00000406019 ARID3CA6NKF2 412 aa9.29□□□□□ -0.92
HMGB1P13-201ENST00000406019 FAM196BA6NMK8 535 aa9.29□□□□□ -0.92
HMGB1P13-201ENST00000406019 PSME1Q06323 249 aa9.29□□□□□ -0.92
HMGB1P13-201ENST00000406019 ZNF594Q96JF6 807 aaPredicted RBP9.29□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L15C9J2P7 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L10C9JJH3 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L13C9JLJ4 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L12C9JPN9 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L11C9JVI0 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L21D6R901 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L18D6R9N7 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L22D6RA61 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L17D6RBQ6 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L19D6RCP7 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L20D6RJB6 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 RASA1P20936 1047 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L24Q0WX57 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 GNASQ5JWF2 1037 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 TMEM214Q6NUQ4 689 aaKnown RBP9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 POTEAQ6S8J7 498 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 ZDHHC1Q8WTX9 485 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 ZNF837Q96EG3 531 aaPredicted RBP9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 TIMMDC1Q9NPL8 285 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 SFI1A8K8P3 1242 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 BACH1O14867 736 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 ATP4AP20648 1035 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 PHKA2P46019 1235 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 UBAP2LQ14157 1087 aaKnown RBP9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 DBN1Q16643 649 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 TRIM22Q8IYM9 498 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 TNS4Q8IZW8 715 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 A0A1B0GTH6 734 aa9.26□□□□□ -0.93
HMGB1P13-201ENST00000406019 VWA5B2Q8N398 1253 aa9.26□□□□□ -0.93
HMGB1P13-201ENST00000406019 VRTNQ9H8Y1 702 aa9.26□□□□□ -0.93
HMGB1P13-201ENST00000406019 F11P03951 625 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 MSX1P28360 303 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 PLA2G4AP47712 749 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 GAS6Q14393 721 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 RNFT1Q5M7Z0 435 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 TSEN2Q8NCE0 465 aaKnown RBP9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 C21orf2O43822 256 aa9.24□□□□□ -0.93
HMGB1P13-201ENST00000406019 DPYDQ12882 1025 aa9.24□□□□□ -0.93
HMGB1P13-201ENST00000406019 SLC9A9Q8IVB4 645 aa9.24□□□□□ -0.93
HMGB1P13-201ENST00000406019 GMCL1Q96IK5 515 aa9.24□□□□□ -0.93
HMGB1P13-201ENST00000406019 NIFKQ9BYG3 293 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms