RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 ESF1Q9H501 851 aaKnown RBP9.4□□□□□ -0.9
HMGB1P13-201ENST00000406019 ESCO1Q5FWF5 840 aa9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 KANK4Q5T7N3 995 aaPredicted RBP9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 NBPF10Q6P3W6 841 aaKnown RBP9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 PRICKLE2Q7Z3G6 844 aa9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 NBPF15Q8N660 670 aa9.39□□□□□ -0.91
HMGB1P13-201ENST00000406019 RHOQP17081 205 aa9.38□□□□□ -0.91
HMGB1P13-201ENST00000406019 EPHA4P54764 986 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 POU4F2Q12837 409 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 MTFR1Q15390 333 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 WDR44Q5JSH3 913 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 CUEDC1Q9NWM3 386 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 MKRN1Q9UHC7 482 aaKnown RBP9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 IQSEC3Q9UPP2 1182 aaPredicted RBP9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 USP3Q9Y6I4 520 aa9.37□□□□□ -0.91
HMGB1P13-201ENST00000406019 PPARGC1BQ86YN6 1023 aaKnown RBP9.36□□□□□ -0.91
HMGB1P13-201ENST00000406019 NANOS1Q8WY41 292 aaKnown RBP9.36□□□□□ -0.91
HMGB1P13-201ENST00000406019 ZNF358Q9NW07 568 aa9.36□□□□□ -0.91
HMGB1P13-201ENST00000406019 ITGA6P23229 1130 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 SMTNP53814 917 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 SLC27A3Q5K4L6 730 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 TRIM50Q86XT4 487 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 SIX5Q8N196 739 aa9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 ZSCAN10Q96SZ4 725 aaPredicted RBP9.35□□□□□ -0.91
HMGB1P13-201ENST00000406019 WIPF1O43516 503 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 FOXK2Q01167 660 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 TLR1Q15399 786 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 C4orf17Q53FE4 359 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 OGFOD1Q8N543 542 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 C1orf115Q9H7X2 142 aa9.34□□□□□ -0.91
HMGB1P13-201ENST00000406019 THBS1P07996 1170 aa9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 SRPK2P78362 688 aaKnown RBP9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 TAS1R3Q7RTX0 852 aa9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 LARGE2Q8N3Y3 721 aa9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 GPR161Q8N6U8 529 aaKnown RBP9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 DNAAF2Q9NVR5 837 aaKnown RBP9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 DYRK1BQ9Y463 629 aa9.33□□□□□ -0.92
HMGB1P13-201ENST00000406019 GMPRP36959 345 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 CRTC2Q53ET0 693 aaPredicted RBP9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 TPCN2Q8NHX9 752 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 RHBDD1Q8TEB9 315 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 SLC16A10Q8TF71 515 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 IRF7Q92985 503 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 SERTAD1Q9UHV2 236 aa9.32□□□□□ -0.92
HMGB1P13-201ENST00000406019 A6NJY4 79 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 CDK2AP1O14519 115 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 LMOD1P29536 600 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 ATP1A2P50993 1020 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 PTK7Q13308 1070 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 CCDC102BQ68D86 513 aa9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 SCHIP1Q9P0W5 487 aaPredicted RBP9.31□□□□□ -0.92
HMGB1P13-201ENST00000406019 M0R2N6 131 aa9.3□□□□□ -0.92
HMGB1P13-201ENST00000406019 LORP23490 312 aaPredicted RBP9.3□□□□□ -0.92
HMGB1P13-201ENST00000406019 KRT76Q01546 638 aa9.3□□□□□ -0.92
HMGB1P13-201ENST00000406019 ARID3CA6NKF2 412 aa9.29□□□□□ -0.92
HMGB1P13-201ENST00000406019 FAM196BA6NMK8 535 aa9.29□□□□□ -0.92
HMGB1P13-201ENST00000406019 PSME1Q06323 249 aa9.29□□□□□ -0.92
HMGB1P13-201ENST00000406019 ZNF594Q96JF6 807 aaPredicted RBP9.29□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L15C9J2P7 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L10C9JJH3 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L13C9JLJ4 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L12C9JPN9 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L11C9JVI0 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L21D6R901 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L18D6R9N7 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L22D6RA61 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L17D6RBQ6 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L19D6RCP7 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L20D6RJB6 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 RASA1P20936 1047 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 USP17L24Q0WX57 530 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 GNASQ5JWF2 1037 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 TMEM214Q6NUQ4 689 aaKnown RBP9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 POTEAQ6S8J7 498 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 ZDHHC1Q8WTX9 485 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 ZNF837Q96EG3 531 aaPredicted RBP9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 TIMMDC1Q9NPL8 285 aa9.28□□□□□ -0.92
HMGB1P13-201ENST00000406019 SFI1A8K8P3 1242 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 BACH1O14867 736 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 ATP4AP20648 1035 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 PHKA2P46019 1235 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 UBAP2LQ14157 1087 aaKnown RBP9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 DBN1Q16643 649 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 TRIM22Q8IYM9 498 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 TNS4Q8IZW8 715 aa9.27□□□□□ -0.93
HMGB1P13-201ENST00000406019 A0A1B0GTH6 734 aa9.26□□□□□ -0.93
HMGB1P13-201ENST00000406019 VWA5B2Q8N398 1253 aa9.26□□□□□ -0.93
HMGB1P13-201ENST00000406019 VRTNQ9H8Y1 702 aa9.26□□□□□ -0.93
HMGB1P13-201ENST00000406019 F11P03951 625 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 MSX1P28360 303 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 PLA2G4AP47712 749 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 GAS6Q14393 721 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 RNFT1Q5M7Z0 435 aa9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 TSEN2Q8NCE0 465 aaKnown RBP9.25□□□□□ -0.93
HMGB1P13-201ENST00000406019 C21orf2O43822 256 aa9.24□□□□□ -0.93
HMGB1P13-201ENST00000406019 DPYDQ12882 1025 aa9.24□□□□□ -0.93
HMGB1P13-201ENST00000406019 SLC9A9Q8IVB4 645 aa9.24□□□□□ -0.93
HMGB1P13-201ENST00000406019 GMCL1Q96IK5 515 aa9.24□□□□□ -0.93
HMGB1P13-201ENST00000406019 NIFKQ9BYG3 293 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms