RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 NUCB2P80303 420 aa11.38□□□□□ -0.59
CHD3-202ENST00000358181 TXLNBQ8N3L3 684 aa11.38□□□□□ -0.59
CHD3-202ENST00000358181 CPLX3Q8WVH0 158 aa11.38□□□□□ -0.59
CHD3-202ENST00000358181 DACH1Q9UI36 760 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 PHLDB1Q86UU1 1377 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 IDH1O75874 414 aaKnown RBP11.37□□□□□ -0.59
CHD3-202ENST00000358181 FLIIQ13045 1269 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 MRVI1Q9Y6F6 885 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 IGHMBP2P38935 993 aaKnown RBP11.37□□□□□ -0.59
CHD3-202ENST00000358181 ZNF408Q9H9D4 720 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 VAT1LQ9HCJ6 419 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 CLGNO14967 610 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 GJC1P36383 396 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 RBM26Q5T8P6 1007 aaKnown RBP11.37□□□□□ -0.59
CHD3-202ENST00000358181 HAUS7Q99871 368 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 PAIP2Q9BPZ3 127 aaKnown RBP11.37□□□□□ -0.59
CHD3-202ENST00000358181 CCDC160A6NGH7 325 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 DDX19BQ9UMR2 479 aa11.37□□□□□ -0.59
CHD3-202ENST00000358181 PRC1O43663 620 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 PRKAR2BP31323 418 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.36□□□□□ -0.59
CHD3-202ENST00000358181 ZNF397Q8NF99 534 aaPredicted RBP11.36□□□□□ -0.59
CHD3-202ENST00000358181 MIS18AQ9NYP9 233 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 CCP110O43303 1012 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 BANK1Q8NDB2 785 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 PRPF31Q8WWY3 499 aaKnown RBP11.36□□□□□ -0.59
CHD3-202ENST00000358181 PPP1R12AO14974 1030 aaPredicted RBP11.36□□□□□ -0.59
CHD3-202ENST00000358181 NLRP5P59047 1200 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 UTP14AQ9BVJ6 771 aaKnown RBP11.36□□□□□ -0.59
CHD3-202ENST00000358181 SLC12A5Q9H2X9 1139 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 CACNA2D4Q7Z3S7 1137 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 BEGAINQ9BUH8 593 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 GPRASP1Q5JY77 1395 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 NESP48681 1621 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 SYCP3Q8IZU3 236 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 PFDN4Q9NQP4 134 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 CCDC39Q9UFE4 941 aa11.36□□□□□ -0.59
CHD3-202ENST00000358181 GNL1P36915 607 aaPredicted RBP11.35□□□□□ -0.59
CHD3-202ENST00000358181 SPOUT1Q5T280 376 aaKnown RBP11.35□□□□□ -0.59
CHD3-202ENST00000358181 TSG101Q99816 390 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 MXRA7P84157 204 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 CAVIN1Q6NZI2 390 aaKnown RBP11.35□□□□□ -0.59
CHD3-202ENST00000358181 AKNAD1Q5T1N1 836 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 PPP1R9BQ96SB3 815 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 KLHL10Q6JEL2 608 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 CCDC63Q8NA47 563 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 CDK19Q9BWU1 502 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 API5Q9BZZ5 524 aaKnown RBP11.35□□□□□ -0.59
CHD3-202ENST00000358181 SMG6Q86US8 1419 aaKnown RBP11.35□□□□□ -0.59
CHD3-202ENST00000358181 CCDC82Q8N4S0 544 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 GTPBP4Q9BZE4 634 aaKnown RBP11.35□□□□□ -0.59
CHD3-202ENST00000358181 CABP1Q9NZU7 370 aa11.35□□□□□ -0.59
CHD3-202ENST00000358181 ZC3H6P61129 1189 aaKnown RBP11.34□□□□□ -0.59
CHD3-202ENST00000358181 TSPY26PQ9H489 355 aa11.34□□□□□ -0.59
CHD3-202ENST00000358181 CCDC117Q8IWD4 279 aaPredicted RBP11.34□□□□□ -0.59
CHD3-202ENST00000358181 SULT6B1Q6IMI4 303 aa11.34□□□□□ -0.59
CHD3-202ENST00000358181 IQCEQ6IPM2 695 aa11.34□□□□□ -0.59
CHD3-202ENST00000358181 TRERF1Q96PN7 1200 aa11.34□□□□□ -0.59
CHD3-202ENST00000358181 FERMT1Q9BQL6 677 aa11.34□□□□□ -0.59
CHD3-202ENST00000358181 PLEKHO1Q53GL0 409 aaPredicted RBP11.34□□□□□ -0.59
CHD3-202ENST00000358181 FAM43AQ8N2R8 423 aa11.34□□□□□ -0.59
CHD3-202ENST00000358181 C6orf229H3BNL8 230 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 EXOSC9Q06265 439 aaKnown RBP11.33□□□□□ -0.6
CHD3-202ENST00000358181 KMT5BQ4FZB7 885 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 ZNF526Q8TF50 670 aaPredicted RBP11.33□□□□□ -0.6
CHD3-202ENST00000358181 LRRC45Q96CN5 670 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 IGF1RP08069 1367 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 LUZP1Q86V48 1076 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 PRDM10Q9NQV6 1147 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 NOB1Q9ULX3 412 aaKnown RBP11.33□□□□□ -0.6
CHD3-202ENST00000358181 KIF5CO60282 957 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 PRPF40AO75400 957 aaKnown RBP11.33□□□□□ -0.6
CHD3-202ENST00000358181 TNMDQ9H2S6 317 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 EHMT1Q9H9B1 1298 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 GCOM1H8Y6P7 765 aaPredicted RBP11.33□□□□□ -0.6
CHD3-202ENST00000358181 BCAR3O75815 825 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 MYZAPP0CAP1 466 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 TCERG1LQ5VWI1 586 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 CCDC89Q8N998 374 aa11.33□□□□□ -0.6
CHD3-202ENST00000358181 CCDC148Q8NFR7 591 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 GTF3C6Q969F1 213 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 SNX16P57768 344 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 GNAI1P63096 354 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 GABPAQ06546 454 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 SPA17Q15506 151 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 USHBP1Q8N6Y0 703 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 MPHOSPH6Q99547 160 aaKnown RBP11.32□□□□□ -0.6
CHD3-202ENST00000358181 PPP2R5CQ13362 524 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 CCDC30Q5VVM6 783 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 ZBED9Q6R2W3 1325 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 TCP11L2Q8N4U5 519 aa11.32□□□□□ -0.6
CHD3-202ENST00000358181 ZFP91Q96JP5 570 aaPredicted RBP11.32□□□□□ -0.6
CHD3-202ENST00000358181 TMCO3Q6UWJ1 677 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 TMEM110-MUSTN1A8MSY1 372 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 AIDAQ96BJ3 306 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 ALS2CR12Q96Q35 445 aa11.31□□□□□ -0.6
CHD3-202ENST00000358181 NAP1L3Q99457 506 aaPredicted RBP11.31□□□□□ -0.6
CHD3-202ENST00000358181 F8W031 263 aaPredicted RBP11.31□□□□□ -0.6
CHD3-202ENST00000358181 TDRD12Q587J7 1177 aaKnown RBP11.31□□□□□ -0.6
CHD3-202ENST00000358181 JMYQ8N9B5 988 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms