RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 RFC1P35251 1148 aaPredicted RBP14.89□□□□□ -0.03
USP47-202ENST00000339865 PDE1CQ14123 709 aaPredicted RBP14.89□□□□□ -0.03
USP47-202ENST00000339865 TDRD12Q587J7 1177 aaKnown RBP14.89□□□□□ -0.03
USP47-202ENST00000339865 CLIP2Q9UDT6 1046 aa14.89□□□□□ -0.03
USP47-202ENST00000339865 ZSWIM4Q9H7M6 989 aa14.88□□□□□ -0.03
USP47-202ENST00000339865 PABPN1LA6NDY0 278 aaKnown RBP14.88□□□□□ -0.03
USP47-202ENST00000339865 ZBTB16Q05516 673 aa14.88□□□□□ -0.03
USP47-202ENST00000339865 TTC31Q49AM3 519 aaPredicted RBP14.88□□□□□ -0.03
USP47-202ENST00000339865 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.88□□□□□ -0.03
USP47-202ENST00000339865 DNAI2Q9GZS0 605 aa14.88□□□□□ -0.03
USP47-202ENST00000339865 USP5P45974 858 aa14.88□□□□□ -0.03
USP47-202ENST00000339865 JADE2Q9NQC1 790 aa14.88□□□□□ -0.03
USP47-202ENST00000339865 CNNM1Q9NRU3 951 aa14.88□□□□□ -0.03
USP47-202ENST00000339865 MAP7D1Q3KQU3 841 aa14.88□□□□□ -0.03
USP47-202ENST00000339865 SREK1Q8WXA9 508 aaKnown RBP14.88□□□□□ -0.03
USP47-202ENST00000339865 RUNDC1Q96C34 613 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 UBA5Q9GZZ9 404 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 CCDC158Q5M9N0 1113 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 CCDC83Q8IWF9 413 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 TNIKQ9UKE5 1360 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 CEP120Q8N960 986 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 SUDS3Q9H7L9 328 aaPredicted RBP14.87□□□□□ -0.03
USP47-202ENST00000339865 SSX2IPQ9Y2D8 614 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 ERCC3P19447 782 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 MCM4P33991 863 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 CDKL5O76039 1030 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 ZBTB9Q96C00 473 aa14.87□□□□□ -0.03
USP47-202ENST00000339865 EVC2Q86UK5 1308 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 KIF4AO95239 1232 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 MRPS9P82933 396 aaKnown RBP14.86□□□□□ -0.03
USP47-202ENST00000339865 CPLX3Q8WVH0 158 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 ZNF219Q9P2Y4 722 aaPredicted RBP14.86□□□□□ -0.03
USP47-202ENST00000339865 SWAP70Q9UH65 585 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 SARNPP82979 210 aaKnown RBP14.86□□□□□ -0.03
USP47-202ENST00000339865 PRKRIP1Q9H875 184 aaPredicted RBP14.86□□□□□ -0.03
USP47-202ENST00000339865 IVLP07476 585 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 MCM6Q14566 821 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 ZNF710Q8N1W2 664 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 CCDC150Q8NCX0 1101 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 UBE2Q2Q8WVN8 375 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 LIG1P18858 919 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 ANAPC4Q9UJX5 808 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 CYB5RLQ6IPT4 315 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 ATRIPQ8WXE1 791 aa14.86□□□□□ -0.03
USP47-202ENST00000339865 CIZ1Q9ULV3 898 aaPredicted RBP14.85□□□□□ -0.03
USP47-202ENST00000339865 SEPT14Q6ZU15 432 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 CCDC155Q8N6L0 562 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 KIF5BP33176 963 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 BLOC1S2Q6QNY1 142 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 CEP131Q9UPN4 1083 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 WHAMMQ8TF30 809 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 GNAI1P63096 354 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 FKBP4Q02790 459 aaKnown RBP eCLIP14.85□□□□□ -0.03
USP47-202ENST00000339865 TSG101Q99816 390 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 NACAP1Q9BZK3 213 aa14.85□□□□□ -0.03
USP47-202ENST00000339865 BIN2Q9UBW5 565 aaPredicted RBP14.85□□□□□ -0.03
USP47-202ENST00000339865 POTEB2H3BUK9 544 aa14.84□□□□□ -0.03
USP47-202ENST00000339865 OTUD6BQ8N6M0 293 aa14.84□□□□□ -0.03
USP47-202ENST00000339865 FERMT2Q96AC1 680 aa14.84□□□□□ -0.03
USP47-202ENST00000339865 ALS2CR12Q96Q35 445 aa14.84□□□□□ -0.03
USP47-202ENST00000339865 SIL1Q9H173 461 aa14.84□□□□□ -0.03
USP47-202ENST00000339865 IQCGQ9H095 443 aaKnown RBP14.84□□□□□ -0.03
USP47-202ENST00000339865 NSRP1Q9H0G5 558 aaKnown RBP14.84□□□□□ -0.03
USP47-202ENST00000339865 RBM42Q9BTD8 480 aaKnown RBP14.84□□□□□ -0.03
USP47-202ENST00000339865 SMC6Q96SB8 1091 aa14.84□□□□□ -0.03
USP47-202ENST00000339865 NBPF1Q3BBV0 1214 aa14.84□□□□□ -0.03
USP47-202ENST00000339865 KIF6Q6ZMV9 814 aa14.84□□□□□ -0.03
USP47-202ENST00000339865 DYNC1I1O14576 645 aa14.83□□□□□ -0.04
USP47-202ENST00000339865 EPSTI1Q96J88 318 aa14.83□□□□□ -0.04
USP47-202ENST00000339865 GBP6Q6ZN66 633 aa14.83□□□□□ -0.04
USP47-202ENST00000339865 SNW1Q13573 536 aaKnown RBP14.83□□□□□ -0.04
USP47-202ENST00000339865 SMC1BQ8NDV3 1235 aa14.83□□□□□ -0.04
USP47-202ENST00000339865 ANO10Q9NW15 660 aa14.83□□□□□ -0.04
USP47-202ENST00000339865 PDZRN3Q9UPQ7 1066 aa14.83□□□□□ -0.04
USP47-202ENST00000339865 MKRN1Q9UHC7 482 aaKnown RBP14.82□□□□□ -0.04
USP47-202ENST00000339865 FGFR1OPO95684 399 aaKnown RBP14.82□□□□□ -0.04
USP47-202ENST00000339865 ARFGAP3Q9NP61 516 aa14.82□□□□□ -0.04
USP47-202ENST00000339865 C10orf67Q8IYJ2 551 aa14.82□□□□□ -0.04
USP47-202ENST00000339865 KRT222Q8N1A0 295 aa14.82□□□□□ -0.04
USP47-202ENST00000339865 UBAC1Q9BSL1 405 aa14.82□□□□□ -0.04
USP47-202ENST00000339865 SATB1Q01826 763 aa14.82□□□□□ -0.04
USP47-202ENST00000339865 CKAP4Q07065 602 aaKnown RBP14.82□□□□□ -0.04
USP47-202ENST00000339865 RSRC1Q96IZ7 334 aaKnown RBP14.82□□□□□ -0.04
USP47-202ENST00000339865 GNL3LQ9NVN8 582 aaKnown RBP14.82□□□□□ -0.04
USP47-202ENST00000339865 RNF216Q9NWF9 866 aaPredicted RBP14.82□□□□□ -0.04
USP47-202ENST00000339865 JAKMIP1Q96N16 626 aaKnown RBP14.82□□□□□ -0.04
USP47-202ENST00000339865 GNAI2P04899 355 aa14.82□□□□□ -0.04
USP47-202ENST00000339865 CCDC183Q5T5S1 534 aa14.82□□□□□ -0.04
USP47-202ENST00000339865 WASHC2CQ9Y4E1 1318 aa14.82□□□□□ -0.04
USP47-202ENST00000339865 AAMPQ13685 434 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 CEP135Q66GS9 1140 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 CWC27Q6UX04 472 aaKnown RBP14.81□□□□□ -0.04
USP47-202ENST00000339865 MINK1Q8N4C8 1332 aaPredicted RBP14.81□□□□□ -0.04
USP47-202ENST00000339865 NUTM2GQ5VZR2 741 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 CCDC63Q8NA47 563 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 FAM114A2Q9NRY5 505 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 PDRG1Q9NUG6 133 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 SETSIPP0DME0 302 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 PPP1R9BQ96SB3 815 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 CCDC174Q6PII3 467 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms