RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 CEP57Q86XR8 500 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC50Q8IVM0 306 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 STIM2Q9P246 746 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 SMC6Q96SB8 1091 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 ST20-MTHFSA0A0A6YYL1 179 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 ATP2B1P20020 1258 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 HLTFQ14527 1009 aaKnown RBP eCLIP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 LTV1Q96GA3 475 aaPredicted RBP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 SRRTQ9BXP5 876 aaKnown RBP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 OPA1O60313 960 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 URI1O94763 535 aaPredicted RBP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 KIF4AO95239 1232 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 SOGA3Q5TF21 947 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 MPNDQ8N594 471 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 ZFP91Q96JP5 570 aaPredicted RBP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 NUP88Q99567 741 aaPredicted RBP7.16□□□□□ -1.26
CSMD1-201ENST00000335551 RSPH14Q9UHP6 348 aa7.16□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC155Q8N6L0 562 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 APAF1O14727 1248 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 NACAP1Q9BZK3 213 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 ELL2O00472 640 aaPredicted RBP7.15□□□□□ -1.26
CSMD1-201ENST00000335551 AIMP1Q12904 312 aaKnown RBP7.15□□□□□ -1.26
CSMD1-201ENST00000335551 PPP1R14CQ8TAE6 165 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 RASAL2Q9UJF2 1139 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 IKQ13123 557 aaPredicted RBP7.15□□□□□ -1.26
CSMD1-201ENST00000335551 TSNARE1Q96NA8 513 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 TCHPQ9BT92 498 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC69A6NI79 296 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 DIAPH1O60610 1272 aaKnown RBP7.15□□□□□ -1.26
CSMD1-201ENST00000335551 EIF2S2P20042 333 aaKnown RBP7.15□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC158Q5M9N0 1113 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 SCLT1Q96NL6 688 aa7.15□□□□□ -1.26
CSMD1-201ENST00000335551 GNL3LQ9NVN8 582 aaKnown RBP7.15□□□□□ -1.26
CSMD1-201ENST00000335551 HOMER2Q9NSB8 354 aa7.15□□□□□ -1.27
CSMD1-201ENST00000335551 NUP133Q8WUM0 1156 aa7.15□□□□□ -1.27
CSMD1-201ENST00000335551 TSG101Q99816 390 aa7.15□□□□□ -1.27
CSMD1-201ENST00000335551 A0A1B0GUL7 405 aa7.15□□□□□ -1.27
CSMD1-201ENST00000335551 MPHOSPH10O00566 681 aaKnown RBP7.15□□□□□ -1.27
CSMD1-201ENST00000335551 NAA25Q14CX7 972 aa7.15□□□□□ -1.27
CSMD1-201ENST00000335551 NEUROD6Q96NK8 337 aa7.15□□□□□ -1.27
CSMD1-201ENST00000335551 DHX57Q6P158 1386 aaKnown RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 WDHD1O75717 1129 aaPredicted RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 SMG6Q86US8 1419 aaKnown RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 LACTBP83111 547 aaPredicted RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 SH2B1Q9NRF2 756 aaPredicted RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 B4GALNT4Q76KP1 1039 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 USH1CQ9Y6N9 552 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 LARP1Q6PKG0 1096 aaKnown RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 ZHX3Q9H4I2 956 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 LUC7L2Q9Y383 392 aaKnown RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 A0A1W2PRG0 241 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 GOLIM4O00461 696 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 CCDC110Q8TBZ0 833 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 CTNNBL1Q8WYA6 563 aaPredicted RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 MXRA7P84157 204 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 MKRN1Q9UHC7 482 aaKnown RBP7.14□□□□□ -1.27
CSMD1-201ENST00000335551 TSPYL4Q9UJ04 414 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 LMNTD2Q8IXW0 634 aa7.14□□□□□ -1.27
CSMD1-201ENST00000335551 IFI16Q16666 785 aaKnown RBP7.13□□□□□ -1.27
CSMD1-201ENST00000335551 RPUSD2Q8IZ73 545 aaKnown RBP7.13□□□□□ -1.27
CSMD1-201ENST00000335551 SPDYE4A6NLX3 237 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 FERMT1Q9BQL6 677 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 PLVAPQ9BX97 442 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 AK9Q5TCS8 1911 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 SMAP1Q8IYB5 467 aaPredicted RBP7.13□□□□□ -1.27
CSMD1-201ENST00000335551 CTNNA3Q9UI47 895 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 KIF20AO95235 890 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 TUBBP07437 444 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 ZBTB17Q13105 803 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 CACNA2D4Q7Z3S7 1137 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 OTUD6BQ8N6M0 293 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 IFT74Q96LB3 600 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 IQCGQ9H095 443 aaKnown RBP7.13□□□□□ -1.27
CSMD1-201ENST00000335551 PDRG1Q9NUG6 133 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 TSNAXIP1Q2TAA8 658 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 POTEDQ86YR6 584 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 GNAI2P04899 355 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 UVSSAQ2YD98 709 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 ZNF526Q8TF50 670 aaPredicted RBP7.13□□□□□ -1.27
CSMD1-201ENST00000335551 FEZ2Q9UHY8 353 aaPredicted RBP7.13□□□□□ -1.27
CSMD1-201ENST00000335551 MROH2BQ7Z745 1585 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 SEPT14Q6ZU15 432 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 CEP120Q8N960 986 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 BLOC1S2Q6QNY1 142 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 MICALL1Q8N3F8 863 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 RAB3IL1Q8TBN0 382 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 VCX3BQ9H321 246 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 CWC25Q9NXE8 425 aaPredicted RBP7.13□□□□□ -1.27
CSMD1-201ENST00000335551 CAPN2P17655 700 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 CACNA2D3Q8IZS8 1091 aa7.13□□□□□ -1.27
CSMD1-201ENST00000335551 PUS7Q96PZ0 661 aaKnown RBP7.13□□□□□ -1.27
CSMD1-201ENST00000335551 ATP11AP98196 1134 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 PDZRN3Q9UPQ7 1066 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 GBP1P32455 592 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 A6NNZ2 444 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 TUBB8Q3ZCM7 444 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 CCT4P50991 539 aaKnown RBP7.12□□□□□ -1.27
CSMD1-201ENST00000335551 ZSCAN25Q6NSZ9 544 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 CCDC174Q6PII3 467 aa7.12□□□□□ -1.27
CSMD1-201ENST00000335551 CTCFLQ8NI51 663 aaPredicted RBP7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms