RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 JAKMIP1Q96N16 626 aaKnown RBP13.22□□□□□ -0.29
PTPN4-201ENST00000263708 PODXL2Q9NZ53 605 aa13.22□□□□□ -0.29
PTPN4-201ENST00000263708 RRBP1Q9P2E9 1410 aaKnown RBP13.22□□□□□ -0.29
PTPN4-201ENST00000263708 MTHFSP49914 203 aa13.21□□□□□ -0.29
PTPN4-201ENST00000263708 MCM3P25205 808 aa13.21□□□□□ -0.29
PTPN4-201ENST00000263708 PSMC4P43686 418 aa13.21□□□□□ -0.29
PTPN4-201ENST00000263708 NOB1Q9ULX3 412 aaKnown RBP13.21□□□□□ -0.29
PTPN4-201ENST00000263708 TDRD12Q587J7 1177 aaKnown RBP13.21□□□□□ -0.29
PTPN4-201ENST00000263708 GBP3Q9H0R5 595 aa13.21□□□□□ -0.29
PTPN4-201ENST00000263708 FGFR1OPO95684 399 aaKnown RBP13.21□□□□□ -0.3
PTPN4-201ENST00000263708 IPO4Q8TEX9 1081 aaKnown RBP13.21□□□□□ -0.3
PTPN4-201ENST00000263708 CNTLNQ9NXG0 1405 aa13.21□□□□□ -0.3
PTPN4-201ENST00000263708 CCDC160A6NGH7 325 aa13.21□□□□□ -0.3
PTPN4-201ENST00000263708 LRSAM1Q6UWE0 723 aa13.21□□□□□ -0.3
PTPN4-201ENST00000263708 MICALCLQ6ZW33 695 aa13.21□□□□□ -0.3
PTPN4-201ENST00000263708 CTNNA3Q9UI47 895 aa13.21□□□□□ -0.3
PTPN4-201ENST00000263708 SLC4A2P04920 1241 aa13.21□□□□□ -0.3
PTPN4-201ENST00000263708 EHMT1Q9H9B1 1298 aa13.21□□□□□ -0.3
PTPN4-201ENST00000263708 DAAM2Q86T65 1068 aa13.2□□□□□ -0.3
PTPN4-201ENST00000263708 SYNCQ9H7C4 482 aa13.2□□□□□ -0.3
PTPN4-201ENST00000263708 VTI1AQ96AJ9 217 aa13.2□□□□□ -0.3
PTPN4-201ENST00000263708 MXRA7P84157 204 aa13.2□□□□□ -0.3
PTPN4-201ENST00000263708 GRM1Q13255 1194 aa13.2□□□□□ -0.3
PTPN4-201ENST00000263708 RAD54L2Q9Y4B4 1467 aa13.2□□□□□ -0.3
PTPN4-201ENST00000263708 CASTP20810 708 aaKnown RBP13.19□□□□□ -0.3
PTPN4-201ENST00000263708 A0A1W2PRG0 241 aa13.19□□□□□ -0.3
PTPN4-201ENST00000263708 TMEM266Q2M3C6 531 aa13.19□□□□□ -0.3
PTPN4-201ENST00000263708 SYCP3Q8IZU3 236 aa13.19□□□□□ -0.3
PTPN4-201ENST00000263708 PAIP2Q9BPZ3 127 aaKnown RBP13.19□□□□□ -0.3
PTPN4-201ENST00000263708 SAMM50Q9Y512 469 aa13.19□□□□□ -0.3
PTPN4-201ENST00000263708 ZPR1O75312 459 aa13.19□□□□□ -0.3
PTPN4-201ENST00000263708 SPG7Q9UQ90 795 aa13.19□□□□□ -0.3
PTPN4-201ENST00000263708 PRKCSHP14314 528 aaPredicted RBP13.19□□□□□ -0.3
PTPN4-201ENST00000263708 CFAP58Q5T655 872 aa13.19□□□□□ -0.3
PTPN4-201ENST00000263708 DZIP1Q86YF9 867 aaKnown RBP13.19□□□□□ -0.3
PTPN4-201ENST00000263708 BRPF3Q9ULD4 1205 aa13.19□□□□□ -0.3
PTPN4-201ENST00000263708 LRRC45Q96CN5 670 aa13.18□□□□□ -0.3
PTPN4-201ENST00000263708 FHOD3Q2V2M9 1422 aa13.18□□□□□ -0.3
PTPN4-201ENST00000263708 BICD1Q96G01 975 aa13.18□□□□□ -0.3
PTPN4-201ENST00000263708 TWISTNBQ3B726 338 aaPredicted RBP13.18□□□□□ -0.3
PTPN4-201ENST00000263708 ODF2LQ9ULJ1 636 aa13.18□□□□□ -0.3
PTPN4-201ENST00000263708 POLR3GO15318 223 aaPredicted RBP13.18□□□□□ -0.3
PTPN4-201ENST00000263708 KIF4BQ2VIQ3 1234 aa13.18□□□□□ -0.3
PTPN4-201ENST00000263708 MAATS1Q7Z4T9 603 aa13.18□□□□□ -0.3
PTPN4-201ENST00000263708 ZNF219Q9P2Y4 722 aaPredicted RBP13.18□□□□□ -0.3
PTPN4-201ENST00000263708 CETN1Q12798 172 aa13.18□□□□□ -0.3
PTPN4-201ENST00000263708 NAP1L3Q99457 506 aaPredicted RBP13.18□□□□□ -0.3
PTPN4-201ENST00000263708 PRKRIP1Q9H875 184 aaPredicted RBP13.18□□□□□ -0.3
PTPN4-201ENST00000263708 MMRN2Q9H8L6 949 aa13.18□□□□□ -0.3
PTPN4-201ENST00000263708 ZFP91Q96JP5 570 aaPredicted RBP13.17□□□□□ -0.3
PTPN4-201ENST00000263708 CTR9Q6PD62 1173 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 PROSER2Q86WR7 435 aaPredicted RBP13.17□□□□□ -0.3
PTPN4-201ENST00000263708 USO1O60763 962 aaKnown RBP13.17□□□□□ -0.3
PTPN4-201ENST00000263708 SLU7O95391 586 aaKnown RBP13.17□□□□□ -0.3
PTPN4-201ENST00000263708 ACTN2P35609 894 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 CCT4P50991 539 aaKnown RBP13.17□□□□□ -0.3
PTPN4-201ENST00000263708 BTBD11A6QL63 1104 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 PRC1O43663 620 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 NOP2P46087 812 aaKnown RBP13.17□□□□□ -0.3
PTPN4-201ENST00000263708 PDCL2Q8N4E4 241 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 RAB34Q9BZG1 259 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 FANCIQ9NVI1 1328 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 NDC80O14777 642 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 CAVIN4Q5BKX8 364 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 ZSCAN12O43309 604 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 PAFAH1B1P43034 410 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 ALS2CR12Q96Q35 445 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 SPECC1LQ69YQ0 1117 aa13.17□□□□□ -0.3
PTPN4-201ENST00000263708 AAMPQ13685 434 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 METTL24Q5JXM2 366 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 TCERG1LQ5VWI1 586 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 K7ELQ4 463 aaPredicted RBP13.16□□□□□ -0.3
PTPN4-201ENST00000263708 MAP3K11Q16584 847 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 TDRD9Q8NDG6 1382 aaKnown RBP13.16□□□□□ -0.3
PTPN4-201ENST00000263708 SFPQP23246 707 aaKnown RBP eCLIP13.16□□□□□ -0.3
PTPN4-201ENST00000263708 BCAR3O75815 825 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 PRKAR2BP31323 418 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 FAM107BQ9H098 131 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 PTPN14Q15678 1187 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 SRRTQ9BXP5 876 aaKnown RBP13.16□□□□□ -0.3
PTPN4-201ENST00000263708 CEP126Q9P2H0 1117 aa13.16□□□□□ -0.3
PTPN4-201ENST00000263708 TPD52P55327 224 aaPredicted RBP13.15□□□□□ -0.3
PTPN4-201ENST00000263708 GCC1Q96CN9 775 aa13.15□□□□□ -0.3
PTPN4-201ENST00000263708 TOP1P11387 765 aaKnown RBP13.15□□□□□ -0.3
PTPN4-201ENST00000263708 PRDM10Q9NQV6 1147 aa13.15□□□□□ -0.3
PTPN4-201ENST00000263708 ZNF530Q6P9A1 599 aaPredicted RBP13.15□□□□□ -0.3
PTPN4-201ENST00000263708 FBF1Q8TES7 1133 aa13.15□□□□□ -0.3
PTPN4-201ENST00000263708 GRPEL1Q9HAV7 217 aa13.15□□□□□ -0.3
PTPN4-201ENST00000263708 PDZRN3Q9UPQ7 1066 aa13.15□□□□□ -0.3
PTPN4-201ENST00000263708 RANBP6O60518 1105 aaKnown RBP13.15□□□□□ -0.3
PTPN4-201ENST00000263708 PDS5BQ9NTI5 1447 aa13.15□□□□□ -0.3
PTPN4-201ENST00000263708 CCDC82Q8N4S0 544 aa13.15□□□□□ -0.31
PTPN4-201ENST00000263708 CPLX3Q8WVH0 158 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 URI1O94763 535 aaPredicted RBP13.14□□□□□ -0.31
PTPN4-201ENST00000263708 NAA15Q9BXJ9 866 aaKnown RBP13.14□□□□□ -0.31
PTPN4-201ENST00000263708 ZNF652Q9Y2D9 606 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 SRGAP3O43295 1099 aa13.14□□□□□ -0.31
PTPN4-201ENST00000263708 ZNF444Q8N0Y2 327 aaPredicted RBP13.14□□□□□ -0.31
PTPN4-201ENST00000263708 IQCGQ9H095 443 aaKnown RBP13.14□□□□□ -0.31
PTPN4-201ENST00000263708 TERF1P54274 439 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms