RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 V9GYY5 206 aaPredicted RBP12.19□□□□□ -0.46
VCL-201ENST00000211998 RPGRIP1LQ68CZ1 1315 aa12.19□□□□□ -0.46
VCL-201ENST00000211998 CCDC171Q6TFL3 1326 aa12.19□□□□□ -0.46
VCL-201ENST00000211998 CFTRP13569 1480 aa12.19□□□□□ -0.46
VCL-201ENST00000211998 TOP1P11387 765 aaKnown RBP12.19□□□□□ -0.46
VCL-201ENST00000211998 CAPN2P17655 700 aa12.19□□□□□ -0.46
VCL-201ENST00000211998 TTC12Q9H892 705 aaPredicted RBP12.19□□□□□ -0.46
VCL-201ENST00000211998 GNAI2P04899 355 aa12.18□□□□□ -0.46
VCL-201ENST00000211998 HCLS1P14317 486 aaPredicted RBP12.18□□□□□ -0.46
VCL-201ENST00000211998 LUZP1Q86V48 1076 aa12.18□□□□□ -0.46
VCL-201ENST00000211998 JAKMIP1Q96N16 626 aaKnown RBP12.18□□□□□ -0.46
VCL-201ENST00000211998 TROQ12816 1431 aaPredicted RBP12.18□□□□□ -0.46
VCL-201ENST00000211998 MAP4K4O95819 1239 aaPredicted RBP12.18□□□□□ -0.46
VCL-201ENST00000211998 CCT4P50991 539 aaKnown RBP12.18□□□□□ -0.46
VCL-201ENST00000211998 ARFGAP3Q9NP61 516 aa12.18□□□□□ -0.46
VCL-201ENST00000211998 A0A1B0GUL7 405 aa12.17□□□□□ -0.46
VCL-201ENST00000211998 GNL3LQ9NVN8 582 aaKnown RBP12.17□□□□□ -0.46
VCL-201ENST00000211998 WDR97A6NE52 1622 aa12.17□□□□□ -0.46
VCL-201ENST00000211998 FYB1O15117 783 aa12.17□□□□□ -0.46
VCL-201ENST00000211998 SLFN5Q08AF3 891 aa12.17□□□□□ -0.46
VCL-201ENST00000211998 SRRTQ9BXP5 876 aaKnown RBP12.17□□□□□ -0.46
VCL-201ENST00000211998 ZSWIM4Q9H7M6 989 aa12.17□□□□□ -0.46
VCL-201ENST00000211998 TMC6Q7Z403 805 aa12.17□□□□□ -0.46
VCL-201ENST00000211998 CCDC158Q5M9N0 1113 aa12.16□□□□□ -0.46
VCL-201ENST00000211998 TXLNAP40222 546 aa12.16□□□□□ -0.46
VCL-201ENST00000211998 BLOC1S2Q6QNY1 142 aa12.16□□□□□ -0.46
VCL-201ENST00000211998 CCDC83Q8IWF9 413 aa12.16□□□□□ -0.46
VCL-201ENST00000211998 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.16□□□□□ -0.464e-7■■□□□ 14.3
VCL-201ENST00000211998 SCAND2PQ9GZW5 306 aaPredicted RBP12.16□□□□□ -0.46
VCL-201ENST00000211998 BCCIPQ9P287 314 aaKnown RBP eCLIP12.16□□□□□ -0.46
VCL-201ENST00000211998 SLU7O95391 586 aaKnown RBP12.16□□□□□ -0.46
VCL-201ENST00000211998 SPG7Q9UQ90 795 aa12.16□□□□□ -0.46
VCL-201ENST00000211998 PRIM1P49642 420 aaKnown RBP12.15□□□□□ -0.46
VCL-201ENST00000211998 MCM6Q14566 821 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 KRBA2Q6ZNG9 492 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 POGZQ7Z3K3 1410 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 CEP57Q86XR8 500 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 WDR63Q8IWG1 891 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 RBM42Q9BTD8 480 aaKnown RBP12.15□□□□□ -0.46
VCL-201ENST00000211998 CDK19Q9BWU1 502 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 CCDC113Q9H0I3 377 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 ATAD2Q6PL18 1390 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 ARAP1Q96P48 1450 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 GBP6Q6ZN66 633 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 TAF4BQ92750 862 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 ANKRD30BQ9BXX2 1392 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 CCDC175P0C221 793 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 HDGFL1Q5TGJ6 251 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 CCDC186Q7Z3E2 898 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 DRC1Q96MC2 740 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 EZRP15311 586 aaKnown RBP12.15□□□□□ -0.46
VCL-201ENST00000211998 HSPA4P34932 840 aa12.15□□□□□ -0.46
VCL-201ENST00000211998 RTEL1-TNFRSF6BF6WH68 1400 aa12.15□□□□□ -0.47
VCL-201ENST00000211998 ATP2C2O75185 946 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 CASTP20810 708 aaKnown RBP12.14□□□□□ -0.47
VCL-201ENST00000211998 STIM1Q13586 685 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 TTC39AQ5SRH9 613 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 U2AF2P26368 475 aaKnown RBP eCLIP12.14□□□□□ -0.471e-6■■■□□ 15.9
VCL-201ENST00000211998 GNG11P61952 73 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 LIG1P18858 919 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.14□□□□□ -0.476e-10■■□□□ 13
VCL-201ENST00000211998 SSR1P43307 286 aaKnown RBP12.14□□□□□ -0.47
VCL-201ENST00000211998 ZNF165P49910 485 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 SARNPP82979 210 aaKnown RBP12.14□□□□□ -0.47
VCL-201ENST00000211998 ANKRD18AQ8IVF6 992 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 PLEKHH1Q9ULM0 1364 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 GABPB1Q06547 395 aaPredicted RBP12.14□□□□□ -0.47
VCL-201ENST00000211998 IKQ13123 557 aaPredicted RBP12.14□□□□□ -0.47
VCL-201ENST00000211998 CNNM1Q9NRU3 951 aa12.14□□□□□ -0.47
VCL-201ENST00000211998 DDX19AQ9NUU7 478 aaKnown RBP12.14□□□□□ -0.47
VCL-201ENST00000211998 NOL7Q9UMY1 257 aaKnown RBP12.13□□□□□ -0.47
VCL-201ENST00000211998 SKILP12757 684 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 EIF5P55010 431 aaKnown RBP12.13□□□□□ -0.47
VCL-201ENST00000211998 CABP4P57796 275 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 IFFO1Q0D2I5 559 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 IMMTQ16891 758 aaKnown RBP12.13□□□□□ -0.47
VCL-201ENST00000211998 GIMAP6Q6P9H5 292 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 CNKSR2Q8WXI2 1034 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 GTF3C6Q969F1 213 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 TANGO6Q9C0B7 1094 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 ERBINQ96RT1 1412 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 GOLGA6L9A6NEM1 432 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 KLHL34Q8N239 644 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 CTAGE5O15320 804 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 TERF1P54274 439 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 CWC27Q6UX04 472 aaKnown RBP12.13□□□□□ -0.47
VCL-201ENST00000211998 TMEM57Q8N5G2 664 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 CCDC12Q8WUD4 166 aaPredicted RBP12.13□□□□□ -0.47
VCL-201ENST00000211998 SRCIN1Q9C0H9 1055 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 VPS18Q9P253 973 aa12.13□□□□□ -0.47
VCL-201ENST00000211998 SLC4A2P04920 1241 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 HMGB2P26583 209 aaKnown RBP12.12□□□□□ -0.47
VCL-201ENST00000211998 SULT6B1Q6IMI4 303 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 SAMD1Q6SPF0 538 aaPredicted RBP12.12□□□□□ -0.47
VCL-201ENST00000211998 NBPF8Q3BBV2 869 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 ZNF530Q6P9A1 599 aaPredicted RBP12.12□□□□□ -0.47
VCL-201ENST00000211998 NACAP1Q9BZK3 213 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 DNAI1Q9UI46 699 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 UBE2HP62256 183 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 ZSCAN25Q6NSZ9 544 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms