Protein–RNA interactions for Protein: Q9JJV9

Scn5a, Sodium channel protein type 5 subunit alpha, mousemouse

Predictions only

Length 2,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn5aQ9JJV9 Gm25239-201ENSMUST00000174915 86 ntBASIC41.62■■■■■ 4.25
Scn5aQ9JJV9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.75■■■■□ 3.79
Scn5aQ9JJV9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC37.89■■■■□ 3.66
Scn5aQ9JJV9 Gm24109-201ENSMUST00000175489 103 ntBASIC36.31■■■■□ 3.4
Scn5aQ9JJV9 Gm15042-201ENSMUST00000120212 883 ntBASIC36.08■■■■□ 3.37
Scn5aQ9JJV9 Gm15045-201ENSMUST00000117359 883 ntBASIC35.46■■■■□ 3.27
Scn5aQ9JJV9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.21■■■■□ 3.23
Scn5aQ9JJV9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
Scn5aQ9JJV9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
Scn5aQ9JJV9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
Scn5aQ9JJV9 Gm23366-201ENSMUST00000175022 89 ntBASIC34.62■■■■□ 3.13
Scn5aQ9JJV9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
Scn5aQ9JJV9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.95■■■■□ 3.03
Scn5aQ9JJV9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
Scn5aQ9JJV9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.58■■■□□ 2.97
Scn5aQ9JJV9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
Scn5aQ9JJV9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.45■■■□□ 2.94
Scn5aQ9JJV9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Scn5aQ9JJV9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.3■■■□□ 2.92
Scn5aQ9JJV9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.21■■■□□ 2.91
Scn5aQ9JJV9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
Scn5aQ9JJV9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
Scn5aQ9JJV9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
Scn5aQ9JJV9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.97■■■□□ 2.87
Scn5aQ9JJV9 Gm25238-201ENSMUST00000174914 89 ntBASIC32.94■■■□□ 2.86
Scn5aQ9JJV9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.93■■■□□ 2.86
Scn5aQ9JJV9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.91■■■□□ 2.86
Scn5aQ9JJV9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Scn5aQ9JJV9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
Scn5aQ9JJV9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.64■■■□□ 2.82
Scn5aQ9JJV9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Scn5aQ9JJV9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
Scn5aQ9JJV9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.36■■■□□ 2.77
Scn5aQ9JJV9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.21■■■□□ 2.75
Scn5aQ9JJV9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
Scn5aQ9JJV9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
Scn5aQ9JJV9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.03■■■□□ 2.72
Scn5aQ9JJV9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
Scn5aQ9JJV9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.91■■■□□ 2.7
Scn5aQ9JJV9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
Scn5aQ9JJV9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.78■■■□□ 2.68
Scn5aQ9JJV9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
Scn5aQ9JJV9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.62■■■□□ 2.65
Scn5aQ9JJV9 Gm27325-201ENSMUST00000175467 74 ntBASIC31.62■■■□□ 2.65
Scn5aQ9JJV9 Psd-208ENSMUST00000224556 2034 ntBASIC31.56■■■□□ 2.64
Scn5aQ9JJV9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.55■■■□□ 2.64
Scn5aQ9JJV9 Gm25262-201ENSMUST00000174934 133 ntBASIC31.51■■■□□ 2.63
Scn5aQ9JJV9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Scn5aQ9JJV9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Scn5aQ9JJV9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
Scn5aQ9JJV9 Rab21-202ENSMUST00000218831 843 ntBASIC31.11■■■□□ 2.57
Scn5aQ9JJV9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.1■■■□□ 2.57
Scn5aQ9JJV9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.08■■■□□ 2.57
Scn5aQ9JJV9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
Scn5aQ9JJV9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.05■■■□□ 2.56
Scn5aQ9JJV9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.04■■■□□ 2.56
Scn5aQ9JJV9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
Scn5aQ9JJV9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
Scn5aQ9JJV9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.96■■■□□ 2.55
Scn5aQ9JJV9 Gm26115-201ENSMUST00000175605 87 ntBASIC30.93■■■□□ 2.54
Scn5aQ9JJV9 Gm8109-201ENSMUST00000194076 746 ntBASIC30.91■■■□□ 2.54
Scn5aQ9JJV9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.86■■■□□ 2.53
Scn5aQ9JJV9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
Scn5aQ9JJV9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
Scn5aQ9JJV9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC30.84■■■□□ 2.53
Scn5aQ9JJV9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.79■■■□□ 2.52
Scn5aQ9JJV9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.78■■■□□ 2.52
Scn5aQ9JJV9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Scn5aQ9JJV9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Scn5aQ9JJV9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Scn5aQ9JJV9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
Scn5aQ9JJV9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
Scn5aQ9JJV9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Scn5aQ9JJV9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.61■■■□□ 2.49
Scn5aQ9JJV9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.57■■■□□ 2.49
Scn5aQ9JJV9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.56■■■□□ 2.48
Scn5aQ9JJV9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Scn5aQ9JJV9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
Scn5aQ9JJV9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Scn5aQ9JJV9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Scn5aQ9JJV9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Scn5aQ9JJV9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
Scn5aQ9JJV9 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
Scn5aQ9JJV9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
Scn5aQ9JJV9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Scn5aQ9JJV9 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
Scn5aQ9JJV9 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.14■■■□□ 2.42
Scn5aQ9JJV9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.14■■■□□ 2.42
Scn5aQ9JJV9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.12■■■□□ 2.41
Scn5aQ9JJV9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.1■■■□□ 2.41
Scn5aQ9JJV9 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Scn5aQ9JJV9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Scn5aQ9JJV9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Scn5aQ9JJV9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Scn5aQ9JJV9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.01■■■□□ 2.4
Scn5aQ9JJV9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
Scn5aQ9JJV9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29.95■■■□□ 2.39
Scn5aQ9JJV9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Scn5aQ9JJV9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29.94■■■□□ 2.38
Scn5aQ9JJV9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.92■■■□□ 2.38
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms