Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 Y_RNA.379-201ENST00000365653 102 ntBASIC-2.25□□□□□ -2.77
NKX3-1Q99801 RNU6-753P-201ENST00000363926 107 ntBASIC-2.26□□□□□ -2.77
NKX3-1Q99801 RNU6-838P-201ENST00000363399 108 ntBASIC-2.27□□□□□ -2.77
NKX3-1Q99801 RNU6-1008P-201ENST00000384160 104 ntBASIC-2.27□□□□□ -2.77
NKX3-1Q99801 MIR3139-201ENST00000579145 76 ntBASIC-2.27□□□□□ -2.77
NKX3-1Q99801 FTX_4.1-201ENST00000616291 147 ntBASIC-2.27□□□□□ -2.77
NKX3-1Q99801 RNU6-1169P-201ENST00000363537 103 ntBASIC-2.28□□□□□ -2.77
NKX3-1Q99801 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.28□□□□□ -2.77
NKX3-1Q99801 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.29□□□□□ -2.78
NKX3-1Q99801 RNA5SP405-201ENST00000363059 114 ntBASIC-2.29□□□□□ -2.78
NKX3-1Q99801 SNORD54-201ENST00000459159 67 ntBASIC-2.29□□□□□ -2.78
NKX3-1Q99801 RNU6-822P-201ENST00000362707 106 ntBASIC-2.3□□□□□ -2.78
NKX3-1Q99801 RNU6-194P-201ENST00000363862 105 ntBASIC-2.3□□□□□ -2.78
NKX3-1Q99801 RNU6-614P-201ENST00000384369 107 ntBASIC-2.3□□□□□ -2.78
NKX3-1Q99801 U6.59-201ENST00000615686 107 ntBASIC-2.3□□□□□ -2.78
NKX3-1Q99801 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.32□□□□□ -2.78
NKX3-1Q99801 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.32□□□□□ -2.78
NKX3-1Q99801 RNU6-1326P-201ENST00000391262 107 ntBASIC-2.33□□□□□ -2.78
NKX3-1Q99801 RNU6-345P-201ENST00000517001 107 ntBASIC-2.33□□□□□ -2.78
NKX3-1Q99801 MIR4748-201ENST00000578076 82 ntBASIC-2.33□□□□□ -2.78
NKX3-1Q99801 RNA5SP93-201ENST00000362525 114 ntBASIC-2.34□□□□□ -2.78
NKX3-1Q99801 RNU6-808P-201ENST00000391233 108 ntBASIC-2.35□□□□□ -2.79
NKX3-1Q99801 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.36□□□□□ -2.79
NKX3-1Q99801 MT-TM-201ENST00000387377 68 ntBASIC-2.36□□□□□ -2.79
NKX3-1Q99801 RNU6-986P-201ENST00000363133 102 ntBASIC-2.39□□□□□ -2.79
NKX3-1Q99801 Y_RNA.345-201ENST00000365384 92 ntBASIC-2.39□□□□□ -2.79
NKX3-1Q99801 SNORD115.2-201ENST00000391126 59 ntBASIC-2.4□□□□□ -2.79
NKX3-1Q99801 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.4□□□□□ -2.79
NKX3-1Q99801 Y_RNA.206-201ENST00000364136 102 ntBASIC-2.41□□□□□ -2.8
NKX3-1Q99801 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.41□□□□□ -2.8
NKX3-1Q99801 RNU6-930P-201ENST00000390938 100 ntBASIC-2.41□□□□□ -2.8
NKX3-1Q99801 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.42□□□□□ -2.8
NKX3-1Q99801 RNY4P7-201ENST00000364600 96 ntBASIC-2.42□□□□□ -2.8
NKX3-1Q99801 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.43□□□□□ -2.8
NKX3-1Q99801 MIR548F3-201ENST00000408509 87 ntBASIC-2.43□□□□□ -2.8
NKX3-1Q99801 RNU6-141P-201ENST00000410499 105 ntBASIC-2.43□□□□□ -2.8
NKX3-1Q99801 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.45□□□□□ -2.8
NKX3-1Q99801 Y_RNA.63-201ENST00000362841 102 ntBASIC-2.46□□□□□ -2.8
NKX3-1Q99801 RNA5SP224-201ENST00000365069 126 ntBASIC-2.46□□□□□ -2.8
NKX3-1Q99801 Y_RNA.260-201ENST00000364628 101 ntBASIC-2.47□□□□□ -2.8
NKX3-1Q99801 MTND4LP19-201ENST00000403051 166 ntBASIC-2.47□□□□□ -2.8
NKX3-1Q99801 RNU6-836P-201ENST00000362920 107 ntBASIC-2.49□□□□□ -2.81
NKX3-1Q99801 RNU6-59P-201ENST00000384787 107 ntBASIC-2.5□□□□□ -2.81
NKX3-1Q99801 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.5□□□□□ -2.81
NKX3-1Q99801 RNY4P9-201ENST00000363194 97 ntBASIC-2.51□□□□□ -2.81
NKX3-1Q99801 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.54□□□□□ -2.82
NKX3-1Q99801 SNORD45C-201ENST00000383893 79 ntBASIC-2.54□□□□□ -2.82
NKX3-1Q99801 MIR545-201ENST00000385085 106 ntBASIC-2.56□□□□□ -2.82
NKX3-1Q99801 MIR656-201ENST00000385224 78 ntBASIC-2.56□□□□□ -2.82
NKX3-1Q99801 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.57□□□□□ -2.82
NKX3-1Q99801 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.58□□□□□ -2.82
NKX3-1Q99801 DLEU2_4.2-201ENST00000616613 58 ntBASIC-2.6□□□□□ -2.83
NKX3-1Q99801 RNY4-201ENST00000516507 96 ntBASIC-2.62□□□□□ -2.83
NKX3-1Q99801 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.62□□□□□ -2.83
NKX3-1Q99801 SNX3P1Y-201ENST00000615757 176 ntBASIC-2.62□□□□□ -2.83
NKX3-1Q99801 Y_RNA.335-201ENST00000365299 96 ntBASIC-2.64□□□□□ -2.83
NKX3-1Q99801 RNU6-1340P-201ENST00000384438 107 ntBASIC-2.66□□□□□ -2.84
NKX3-1Q99801 Y_RNA.513-201ENST00000384522 100 ntBASIC-2.67□□□□□ -2.84
NKX3-1Q99801 AL731768.1-201ENST00000603124 139 ntBASIC-2.69□□□□□ -2.84
NKX3-1Q99801 RNU6-854P-201ENST00000364036 107 ntBASIC-2.74□□□□□ -2.85
NKX3-1Q99801 RNU6-1277P-201ENST00000364561 107 ntBASIC-2.75□□□□□ -2.85
NKX3-1Q99801 Y_RNA.186-201ENST00000363899 92 ntBASIC-2.76□□□□□ -2.85
NKX3-1Q99801 RNU6-737P-201ENST00000365370 107 ntBASIC-2.79□□□□□ -2.86
NKX3-1Q99801 RNU6-230P-201ENST00000362457 104 ntBASIC-2.8□□□□□ -2.86
NKX3-1Q99801 Y_RNA.59-201ENST00000362828 102 ntBASIC-2.8□□□□□ -2.86
NKX3-1Q99801 Y_RNA.397-201ENST00000383950 98 ntBASIC-2.84□□□□□ -2.86
NKX3-1Q99801 RNU4-37P-201ENST00000410214 84 ntBASIC-2.84□□□□□ -2.86
NKX3-1Q99801 RNU6-987P-201ENST00000384759 104 ntBASIC-2.86□□□□□ -2.87
NKX3-1Q99801 RNY4P25-201ENST00000459254 96 ntBASIC-2.91□□□□□ -2.88
NKX3-1Q99801 Y_RNA.663-201ENST00000516043 101 ntBASIC-2.91□□□□□ -2.88
NKX3-1Q99801 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.91□□□□□ -2.88
NKX3-1Q99801 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.92□□□□□ -2.88
NKX3-1Q99801 MIR5693-201ENST00000577722 73 ntBASIC-2.95□□□□□ -2.88
NKX3-1Q99801 AL359920.1-201ENST00000618332 176 ntBASIC-2.96□□□□□ -2.88
NKX3-1Q99801 Y_RNA.612-201ENST00000410717 95 ntBASIC-2.97□□□□□ -2.88
NKX3-1Q99801 MIR124-1-201ENST00000385275 85 ntBASIC-2.98□□□□□ -2.89
NKX3-1Q99801 RNU6-803P-201ENST00000516034 102 ntBASIC-3□□□□□ -2.89
NKX3-1Q99801 RNU6-1121P-201ENST00000516802 109 ntBASIC-3□□□□□ -2.89
NKX3-1Q99801 Y_RNA.406-201ENST00000383984 100 ntBASIC-3.01□□□□□ -2.89
NKX3-1Q99801 Y_RNA.652-201ENST00000458902 102 ntBASIC-3.01□□□□□ -2.89
NKX3-1Q99801 RNU6-1161P-201ENST00000516176 102 ntBASIC-3.01□□□□□ -2.89
NKX3-1Q99801 RNU6-422P-201ENST00000384632 107 ntBASIC-3.03□□□□□ -2.89
NKX3-1Q99801 Y_RNA.566-201ENST00000384735 101 ntBASIC-3.03□□□□□ -2.89
NKX3-1Q99801 U6.103-201ENST00000637085 61 ntBASIC-3.03□□□□□ -2.89
NKX3-1Q99801 SNORD111B-201ENST00000408587 80 ntBASIC-3.05□□□□□ -2.9
NKX3-1Q99801 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.06□□□□□ -2.9
NKX3-1Q99801 Y_RNA.79-201ENST00000362992 113 ntBASIC-3.08□□□□□ -2.9
NKX3-1Q99801 Y_RNA.830-201ENST00000628531 96 ntBASIC-3.08□□□□□ -2.9
NKX3-1Q99801 SNORD115-45-201ENST00000391078 81 ntBASIC-3.11□□□□□ -2.91
NKX3-1Q99801 Y_RNA.137-201ENST00000363455 112 ntBASIC-3.12□□□□□ -2.91
NKX3-1Q99801 Y_RNA.266-201ENST00000364678 96 ntBASIC-3.14□□□□□ -2.91
NKX3-1Q99801 MIR548AH-201ENST00000637109 76 ntBASIC-3.14□□□□□ -2.91
NKX3-1Q99801 RNU6-1043P-201ENST00000410355 99 ntBASIC-3.16□□□□□ -2.92
NKX3-1Q99801 RNU6-1044P-201ENST00000384755 107 ntBASIC-3.19□□□□□ -2.92
NKX3-1Q99801 RNU6-485P-201ENST00000363475 107 ntBASIC-3.2□□□□□ -2.92
NKX3-1Q99801 SNORD114-13-201ENST00000364377 74 ntBASIC-3.22□□□□□ -2.92
NKX3-1Q99801 Y_RNA.511-201ENST00000384514 103 ntBASIC-3.28□□□□□ -2.93
NKX3-1Q99801 RNU6-724P-201ENST00000390958 105 ntBASIC-3.31□□□□□ -2.94
NKX3-1Q99801 RNU6-1091P-201ENST00000363945 107 ntBASIC-3.37□□□□□ -2.95
NKX3-1Q99801 MIR509-1-201ENST00000385265 94 ntBASIC-3.38□□□□□ -2.95
Retrieved 100 of 98,524 protein–RNA pairs in 214.4 ms