Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU6-608P-201ENST00000383927 104 ntBASIC-0.89□□□□□ -2.55
VSX1Q9NZR4 RNU6-419P-201ENST00000517030 63 ntBASIC-0.89□□□□□ -2.55
VSX1Q9NZR4 MIR4770-201ENST00000579149 58 ntBASIC-0.89□□□□□ -2.55
VSX1Q9NZR4 MIR6502-201ENST00000617296 76 ntBASIC-0.89□□□□□ -2.55
VSX1Q9NZR4 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.89□□□□□ -2.55
VSX1Q9NZR4 MIR487B-201ENST00000385021 84 ntBASIC-0.9□□□□□ -2.55
VSX1Q9NZR4 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.9□□□□□ -2.55
VSX1Q9NZR4 MIR548X-201ENST00000580069 75 ntBASIC-0.91□□□□□ -2.56
VSX1Q9NZR4 RNA5SP26-201ENST00000362406 119 ntBASIC-0.92□□□□□ -2.56
VSX1Q9NZR4 AL451105.1-201ENST00000450005 189 ntBASIC-0.92□□□□□ -2.56
VSX1Q9NZR4 MIR6818-201ENST00000621576 65 ntBASIC-0.92□□□□□ -2.56
VSX1Q9NZR4 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.93□□□□□ -2.56
VSX1Q9NZR4 Y_RNA.403-201ENST00000383977 101 ntBASIC-0.94□□□□□ -2.56
VSX1Q9NZR4 Y_RNA.421-201ENST00000384052 101 ntBASIC-0.94□□□□□ -2.56
VSX1Q9NZR4 RNU6-980P-201ENST00000516925 103 ntBASIC-0.94□□□□□ -2.56
VSX1Q9NZR4 MIR4756-201ENST00000577874 78 ntBASIC-0.94□□□□□ -2.56
VSX1Q9NZR4 AC091912.2-201ENST00000624798 167 ntBASIC-0.95□□□□□ -2.56
VSX1Q9NZR4 RNU6-1312P-201ENST00000362425 108 ntBASIC-0.96□□□□□ -2.56
VSX1Q9NZR4 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.96□□□□□ -2.56
VSX1Q9NZR4 RNU6-119P-201ENST00000364882 107 ntBASIC-0.97□□□□□ -2.56
VSX1Q9NZR4 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.97□□□□□ -2.56
VSX1Q9NZR4 AC090616.4-201ENST00000448026 115 ntBASIC-0.97□□□□□ -2.56
VSX1Q9NZR4 Y_RNA.722-201ENST00000517279 114 ntBASIC-0.97□□□□□ -2.56
VSX1Q9NZR4 MIR3139-201ENST00000579145 76 ntBASIC-0.97□□□□□ -2.56
VSX1Q9NZR4 MIR6874-201ENST00000635894 71 ntBASIC-0.97□□□□□ -2.56
VSX1Q9NZR4 RNU6-164P-201ENST00000364604 103 ntBASIC-0.98□□□□□ -2.57
VSX1Q9NZR4 RNU6-614P-201ENST00000384369 107 ntBASIC-0.98□□□□□ -2.57
VSX1Q9NZR4 RNU6-576P-201ENST00000390854 102 ntBASIC-0.98□□□□□ -2.57
VSX1Q9NZR4 RPL35AP4-201ENST00000412007 102 ntBASIC-0.98□□□□□ -2.57
VSX1Q9NZR4 AC108019.1-201ENST00000512540 175 ntBASIC-0.98□□□□□ -2.57
VSX1Q9NZR4 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.98□□□□□ -2.57
VSX1Q9NZR4 U6.59-201ENST00000615686 107 ntBASIC-0.98□□□□□ -2.57
VSX1Q9NZR4 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.99□□□□□ -2.57
VSX1Q9NZR4 RNU6-258P-201ENST00000390884 101 ntBASIC-0.99□□□□□ -2.57
VSX1Q9NZR4 MIR548H1-201ENST00000408610 102 ntBASIC-0.99□□□□□ -2.57
VSX1Q9NZR4 Y_RNA.678-201ENST00000516408 96 ntBASIC-1□□□□□ -2.57
VSX1Q9NZR4 MT-TM-201ENST00000387377 68 ntBASIC-1.01□□□□□ -2.57
VSX1Q9NZR4 SNORD113-4-201ENST00000364802 75 ntBASIC-1.02□□□□□ -2.57
VSX1Q9NZR4 RNU6-974P-201ENST00000384099 108 ntBASIC-1.02□□□□□ -2.57
VSX1Q9NZR4 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.02□□□□□ -2.57
VSX1Q9NZR4 RNY4P7-201ENST00000364600 96 ntBASIC-1.03□□□□□ -2.57
VSX1Q9NZR4 AC018880.2-201ENST00000414265 201 ntBASIC-1.03□□□□□ -2.57
VSX1Q9NZR4 SNORD54-201ENST00000459159 67 ntBASIC-1.03□□□□□ -2.57
VSX1Q9NZR4 MIR664B-201ENST00000626756 61 ntBASIC-1.03□□□□□ -2.57
VSX1Q9NZR4 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.04□□□□□ -2.58
VSX1Q9NZR4 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.04□□□□□ -2.58
VSX1Q9NZR4 RNU4-33P-201ENST00000364316 85 ntBASIC-1.06□□□□□ -2.58
VSX1Q9NZR4 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.06□□□□□ -2.58
VSX1Q9NZR4 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.07□□□□□ -2.58
VSX1Q9NZR4 RNU6-808P-201ENST00000391233 108 ntBASIC-1.07□□□□□ -2.58
VSX1Q9NZR4 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.08□□□□□ -2.58
VSX1Q9NZR4 RNU6-361P-201ENST00000364454 107 ntBASIC-1.08□□□□□ -2.58
VSX1Q9NZR4 RNY4-201ENST00000516507 96 ntBASIC-1.08□□□□□ -2.58
VSX1Q9NZR4 RNU6-1191P-201ENST00000516799 107 ntBASIC-1.08□□□□□ -2.58
VSX1Q9NZR4 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.08□□□□□ -2.58
VSX1Q9NZR4 RNA5SP405-201ENST00000363059 114 ntBASIC-1.09□□□□□ -2.58
VSX1Q9NZR4 SNORD60-201ENST00000383903 83 ntBASIC-1.1□□□□□ -2.59
VSX1Q9NZR4 RNU6-530P-201ENST00000391180 107 ntBASIC-1.1□□□□□ -2.59
VSX1Q9NZR4 MTND4LP19-201ENST00000403051 166 ntBASIC-1.1□□□□□ -2.59
VSX1Q9NZR4 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.11□□□□□ -2.59
VSX1Q9NZR4 RNU6-176P-201ENST00000517196 105 ntBASIC-1.12□□□□□ -2.59
VSX1Q9NZR4 RNU6-79P-201ENST00000362511 107 ntBASIC-1.13□□□□□ -2.59
VSX1Q9NZR4 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.13□□□□□ -2.59
VSX1Q9NZR4 AC120024.2-201ENST00000576526 175 ntBASIC-1.14□□□□□ -2.59
VSX1Q9NZR4 SNORA17.4-201ENST00000391287 132 ntBASIC-1.15□□□□□ -2.59
VSX1Q9NZR4 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.16□□□□□ -2.6
VSX1Q9NZR4 RNU6-400P-201ENST00000391173 106 ntBASIC-1.17□□□□□ -2.6
VSX1Q9NZR4 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.17□□□□□ -2.6
VSX1Q9NZR4 RNU6-194P-201ENST00000363862 105 ntBASIC-1.18□□□□□ -2.6
VSX1Q9NZR4 RNU6-936P-201ENST00000384005 107 ntBASIC-1.18□□□□□ -2.6
VSX1Q9NZR4 RNY3P8-201ENST00000411366 126 ntBASIC-1.18□□□□□ -2.6
VSX1Q9NZR4 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.19□□□□□ -2.6
VSX1Q9NZR4 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.19□□□□□ -2.6
VSX1Q9NZR4 RNU4-88P-201ENST00000411220 86 ntBASIC-1.21□□□□□ -2.6
VSX1Q9NZR4 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.21□□□□□ -2.6
VSX1Q9NZR4 MIR4426-201ENST00000640330 63 ntBASIC-1.21□□□□□ -2.6
VSX1Q9NZR4 MIR202-201ENST00000362219 110 ntBASIC-1.22□□□□□ -2.6
VSX1Q9NZR4 MIR548N-201ENST00000408742 75 ntBASIC-1.22□□□□□ -2.6
VSX1Q9NZR4 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.23□□□□□ -2.61
VSX1Q9NZR4 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.24□□□□□ -2.61
VSX1Q9NZR4 SNORD18C-201ENST00000362704 69 ntBASIC-1.25□□□□□ -2.61
VSX1Q9NZR4 RNU6-838P-201ENST00000363399 108 ntBASIC-1.26□□□□□ -2.61
VSX1Q9NZR4 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.26□□□□□ -2.61
VSX1Q9NZR4 RNU6-300P-201ENST00000459080 104 ntBASIC-1.26□□□□□ -2.61
VSX1Q9NZR4 MIR548AL-201ENST00000578416 97 ntBASIC-1.27□□□□□ -2.61
VSX1Q9NZR4 AC013734.1-201ENST00000619329 111 ntBASIC-1.27□□□□□ -2.61
VSX1Q9NZR4 RNU6-230P-201ENST00000362457 104 ntBASIC-1.28□□□□□ -2.61
VSX1Q9NZR4 RNU6-753P-201ENST00000363926 107 ntBASIC-1.28□□□□□ -2.61
VSX1Q9NZR4 RNU6-563P-201ENST00000364872 108 ntBASIC-1.28□□□□□ -2.61
VSX1Q9NZR4 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.28□□□□□ -2.61
VSX1Q9NZR4 RNU6-1121P-201ENST00000516802 109 ntBASIC-1.28□□□□□ -2.61
VSX1Q9NZR4 Y_RNA.186-201ENST00000363899 92 ntBASIC-1.29□□□□□ -2.62
VSX1Q9NZR4 MIR548AM-201ENST00000584298 74 ntBASIC-1.29□□□□□ -2.62
VSX1Q9NZR4 RNU6-987P-201ENST00000384759 104 ntBASIC-1.3□□□□□ -2.62
VSX1Q9NZR4 RNU4-37P-201ENST00000410214 84 ntBASIC-1.3□□□□□ -2.62
VSX1Q9NZR4 RNU6-803P-201ENST00000516034 102 ntBASIC-1.3□□□□□ -2.62
VSX1Q9NZR4 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.31□□□□□ -2.62
VSX1Q9NZR4 RNU6-742P-201ENST00000365289 107 ntBASIC-1.32□□□□□ -2.62
VSX1Q9NZR4 RNU6-141P-201ENST00000410499 105 ntBASIC-1.32□□□□□ -2.62
VSX1Q9NZR4 MIR3123-201ENST00000583417 75 ntBASIC-1.32□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 288.1 ms