Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-1.91□□□□□ -2.72
TRAIPQ9BWF2 MIR487B-201ENST00000385021 84 ntBASIC-1.92□□□□□ -2.72
TRAIPQ9BWF2 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.93□□□□□ -2.72
TRAIPQ9BWF2 SNORA27.2-201ENST00000363365 126 ntBASIC-1.94□□□□□ -2.72
TRAIPQ9BWF2 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.94□□□□□ -2.72
TRAIPQ9BWF2 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.96□□□□□ -2.72
TRAIPQ9BWF2 RNU6-983P-201ENST00000516004 103 ntBASIC-1.96□□□□□ -2.72
TRAIPQ9BWF2 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.96□□□□□ -2.72
TRAIPQ9BWF2 SNORA40.16-201ENST00000517238 121 ntBASIC-1.97□□□□□ -2.72
TRAIPQ9BWF2 MIR3123-201ENST00000583417 75 ntBASIC-1.97□□□□□ -2.72
TRAIPQ9BWF2 AC013734.1-201ENST00000619329 111 ntBASIC-1.97□□□□□ -2.72
TRAIPQ9BWF2 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.99□□□□□ -2.73
TRAIPQ9BWF2 RNU6-974P-201ENST00000384099 108 ntBASIC-1.99□□□□□ -2.73
TRAIPQ9BWF2 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.99□□□□□ -2.73
TRAIPQ9BWF2 Y_RNA.442-201ENST00000384131 102 ntBASIC-2□□□□□ -2.73
TRAIPQ9BWF2 AC139453.2-201ENST00000487255 133 ntBASIC-2□□□□□ -2.73
TRAIPQ9BWF2 AC108019.1-201ENST00000512540 175 ntBASIC-2□□□□□ -2.73
TRAIPQ9BWF2 SNORD45.2-201ENST00000363552 72 ntBASIC-2.01□□□□□ -2.73
TRAIPQ9BWF2 RNY3P8-201ENST00000411366 126 ntBASIC-2.01□□□□□ -2.73
TRAIPQ9BWF2 RNU6-841P-201ENST00000383872 107 ntBASIC-2.02□□□□□ -2.73
TRAIPQ9BWF2 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.02□□□□□ -2.73
TRAIPQ9BWF2 U6.97-201ENST00000636904 101 ntBASIC-2.02□□□□□ -2.73
TRAIPQ9BWF2 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.03□□□□□ -2.73
TRAIPQ9BWF2 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.04□□□□□ -2.74
TRAIPQ9BWF2 MIR548AM-201ENST00000584298 74 ntBASIC-2.06□□□□□ -2.74
TRAIPQ9BWF2 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.07□□□□□ -2.74
TRAIPQ9BWF2 MIR664B-201ENST00000626756 61 ntBASIC-2.07□□□□□ -2.74
TRAIPQ9BWF2 MIR4756-201ENST00000577874 78 ntBASIC-2.09□□□□□ -2.74
TRAIPQ9BWF2 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.1□□□□□ -2.75
TRAIPQ9BWF2 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.12□□□□□ -2.75
TRAIPQ9BWF2 RNU6-119P-201ENST00000364882 107 ntBASIC-2.14□□□□□ -2.75
TRAIPQ9BWF2 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.14□□□□□ -2.75
TRAIPQ9BWF2 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.15□□□□□ -2.75
TRAIPQ9BWF2 MIR202-201ENST00000362219 110 ntBASIC-2.16□□□□□ -2.76
TRAIPQ9BWF2 RNU6-980P-201ENST00000516925 103 ntBASIC-2.16□□□□□ -2.76
TRAIPQ9BWF2 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.17□□□□□ -2.76
TRAIPQ9BWF2 SNORD18C-201ENST00000362704 69 ntBASIC-2.18□□□□□ -2.76
TRAIPQ9BWF2 MIR581-201ENST00000384895 96 ntBASIC-2.18□□□□□ -2.76
TRAIPQ9BWF2 RNU4-88P-201ENST00000411220 86 ntBASIC-2.18□□□□□ -2.76
TRAIPQ9BWF2 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.18□□□□□ -2.76
TRAIPQ9BWF2 MIR633-201ENST00000384821 98 ntBASIC-2.19□□□□□ -2.76
TRAIPQ9BWF2 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-2.19□□□□□ -2.76
TRAIPQ9BWF2 RNU6-788P-201ENST00000390967 104 ntBASIC-2.19□□□□□ -2.76
TRAIPQ9BWF2 snoU13.10-201ENST00000459301 103 ntBASIC-2.19□□□□□ -2.76
TRAIPQ9BWF2 SNORD60-201ENST00000383903 83 ntBASIC-2.2□□□□□ -2.76
TRAIPQ9BWF2 MIR548W-201ENST00000581970 74 ntBASIC-2.2□□□□□ -2.76
TRAIPQ9BWF2 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.21□□□□□ -2.76
TRAIPQ9BWF2 AL451105.1-201ENST00000450005 189 ntBASIC-2.21□□□□□ -2.76
TRAIPQ9BWF2 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.21□□□□□ -2.76
TRAIPQ9BWF2 MIR548N-201ENST00000408742 75 ntBASIC-2.23□□□□□ -2.77
TRAIPQ9BWF2 SNORA17.4-201ENST00000391287 132 ntBASIC-2.24□□□□□ -2.77
TRAIPQ9BWF2 RNU6-419P-201ENST00000517030 63 ntBASIC-2.24□□□□□ -2.77
TRAIPQ9BWF2 RNA5SP405-201ENST00000363059 114 ntBASIC-2.26□□□□□ -2.77
TRAIPQ9BWF2 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.26□□□□□ -2.77
TRAIPQ9BWF2 RNU6-361P-201ENST00000364454 107 ntBASIC-2.26□□□□□ -2.77
TRAIPQ9BWF2 RNU6-530P-201ENST00000391180 107 ntBASIC-2.26□□□□□ -2.77
TRAIPQ9BWF2 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.26□□□□□ -2.77
TRAIPQ9BWF2 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.26□□□□□ -2.77
TRAIPQ9BWF2 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.27□□□□□ -2.77
TRAIPQ9BWF2 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.27□□□□□ -2.77
TRAIPQ9BWF2 RNU6-446P-201ENST00000362827 106 ntBASIC-2.29□□□□□ -2.78
TRAIPQ9BWF2 RNU6-194P-201ENST00000363862 105 ntBASIC-2.29□□□□□ -2.78
TRAIPQ9BWF2 RNU6-499P-201ENST00000365615 107 ntBASIC-2.31□□□□□ -2.78
TRAIPQ9BWF2 MIR496-201ENST00000385226 102 ntBASIC-2.31□□□□□ -2.78
TRAIPQ9BWF2 RNU6-829P-201ENST00000363700 112 ntBASIC-2.32□□□□□ -2.78
TRAIPQ9BWF2 RNY4P7-201ENST00000364600 96 ntBASIC-2.33□□□□□ -2.78
TRAIPQ9BWF2 RNU6-118P-201ENST00000516552 102 ntBASIC-2.33□□□□□ -2.78
TRAIPQ9BWF2 MIR548X-201ENST00000580069 75 ntBASIC-2.33□□□□□ -2.78
TRAIPQ9BWF2 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.34□□□□□ -2.78
TRAIPQ9BWF2 MIR4426-201ENST00000640330 63 ntBASIC-2.34□□□□□ -2.78
TRAIPQ9BWF2 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.37□□□□□ -2.79
TRAIPQ9BWF2 MIR4748-201ENST00000578076 82 ntBASIC-2.37□□□□□ -2.79
TRAIPQ9BWF2 AC079150.2-201ENST00000443733 78 ntBASIC-2.38□□□□□ -2.79
TRAIPQ9BWF2 AC097484.2-201ENST00000509147 251 ntBASIC-2.38□□□□□ -2.79
TRAIPQ9BWF2 RNU6-300P-201ENST00000459080 104 ntBASIC-2.41□□□□□ -2.8
TRAIPQ9BWF2 RNU6-68P-201ENST00000516576 104 ntBASIC-2.41□□□□□ -2.8
TRAIPQ9BWF2 MIR3139-201ENST00000579145 76 ntBASIC-2.41□□□□□ -2.8
TRAIPQ9BWF2 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.41□□□□□ -2.8
TRAIPQ9BWF2 FTX_4.1-201ENST00000616291 147 ntBASIC-2.41□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.42□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.42□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.42□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.42□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.42□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.42□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.42□□□□□ -2.8
TRAIPQ9BWF2 MIR379-201ENST00000362218 67 ntBASIC-2.43□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.43□□□□□ -2.8
TRAIPQ9BWF2 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.43□□□□□ -2.8
TRAIPQ9BWF2 RNU6-912P-201ENST00000363800 104 ntBASIC-2.44□□□□□ -2.8
TRAIPQ9BWF2 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.44□□□□□ -2.8
TRAIPQ9BWF2 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.46□□□□□ -2.8
TRAIPQ9BWF2 SNORD54-201ENST00000459159 67 ntBASIC-2.46□□□□□ -2.8
TRAIPQ9BWF2 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.46□□□□□ -2.8
TRAIPQ9BWF2 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.46□□□□□ -2.8
TRAIPQ9BWF2 SNORD113-3-201ENST00000364830 72 ntBASIC-2.47□□□□□ -2.8
TRAIPQ9BWF2 RNU6-176P-201ENST00000517196 105 ntBASIC-2.47□□□□□ -2.8
TRAIPQ9BWF2 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.48□□□□□ -2.81
TRAIPQ9BWF2 RNU6-742P-201ENST00000365289 107 ntBASIC-2.48□□□□□ -2.81
TRAIPQ9BWF2 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.48□□□□□ -2.81
Retrieved 100 of 98,524 protein–RNA pairs in 189.5 ms