Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RNU6-419P-201ENST00000517030 63 ntBASIC-1.51□□□□□ -2.65
SMC1BQ8NDV3 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.51□□□□□ -2.65
SMC1BQ8NDV3 MIR1246-201ENST00000636535 73 ntBASIC-1.51□□□□□ -2.65
SMC1BQ8NDV3 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.52□□□□□ -2.65
SMC1BQ8NDV3 AC079150.2-201ENST00000443733 78 ntBASIC-1.53□□□□□ -2.65
SMC1BQ8NDV3 MIR4520-1-201ENST00000582609 70 ntBASIC-1.53□□□□□ -2.65
SMC1BQ8NDV3 AC138207.3-201ENST00000585289 166 ntBASIC-1.54□□□□□ -2.66
SMC1BQ8NDV3 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.57□□□□□ -2.66
SMC1BQ8NDV3 AC120024.2-201ENST00000576526 175 ntBASIC-1.57□□□□□ -2.66
SMC1BQ8NDV3 MIR548X-201ENST00000580069 75 ntBASIC-1.57□□□□□ -2.66
SMC1BQ8NDV3 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.6□□□□□ -2.67
SMC1BQ8NDV3 AC091912.2-201ENST00000624798 167 ntBASIC-1.6□□□□□ -2.67
SMC1BQ8NDV3 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.61□□□□□ -2.67
SMC1BQ8NDV3 RNU6-530P-201ENST00000391180 107 ntBASIC-1.61□□□□□ -2.67
SMC1BQ8NDV3 RNY3P8-201ENST00000411366 126 ntBASIC-1.61□□□□□ -2.67
SMC1BQ8NDV3 MIR6874-201ENST00000635894 71 ntBASIC-1.61□□□□□ -2.67
SMC1BQ8NDV3 RNU6-79P-201ENST00000362511 107 ntBASIC-1.62□□□□□ -2.67
SMC1BQ8NDV3 SNORD113-4-201ENST00000364802 75 ntBASIC-1.63□□□□□ -2.67
SMC1BQ8NDV3 RNU6-400P-201ENST00000391173 106 ntBASIC-1.65□□□□□ -2.67
SMC1BQ8NDV3 MIR4770-201ENST00000579149 58 ntBASIC-1.65□□□□□ -2.67
SMC1BQ8NDV3 MIR6502-201ENST00000617296 76 ntBASIC-1.65□□□□□ -2.67
SMC1BQ8NDV3 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.67□□□□□ -2.68
SMC1BQ8NDV3 SNORD60-201ENST00000383903 83 ntBASIC-1.67□□□□□ -2.68
SMC1BQ8NDV3 RNU6-563P-201ENST00000364872 108 ntBASIC-1.68□□□□□ -2.68
SMC1BQ8NDV3 MIR202-201ENST00000362219 110 ntBASIC-1.69□□□□□ -2.68
SMC1BQ8NDV3 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.69□□□□□ -2.68
SMC1BQ8NDV3 RNU6-361P-201ENST00000364454 107 ntBASIC-1.7□□□□□ -2.68
SMC1BQ8NDV3 RNU6-119P-201ENST00000364882 107 ntBASIC-1.7□□□□□ -2.68
SMC1BQ8NDV3 SNORA17.4-201ENST00000391287 132 ntBASIC-1.72□□□□□ -2.68
SMC1BQ8NDV3 AC013734.1-201ENST00000619329 111 ntBASIC-1.73□□□□□ -2.69
SMC1BQ8NDV3 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.74□□□□□ -2.69
SMC1BQ8NDV3 RNU6-983P-201ENST00000516004 103 ntBASIC-1.74□□□□□ -2.69
SMC1BQ8NDV3 Y_RNA.722-201ENST00000517279 114 ntBASIC-1.74□□□□□ -2.69
SMC1BQ8NDV3 RNU4-33P-201ENST00000364316 85 ntBASIC-1.75□□□□□ -2.69
SMC1BQ8NDV3 RNA5SP86-201ENST00000390869 98 ntBASIC-1.75□□□□□ -2.69
SMC1BQ8NDV3 MIR4426-201ENST00000640330 63 ntBASIC-1.75□□□□□ -2.69
SMC1BQ8NDV3 SNORD18.1-201ENST00000363807 70 ntBASIC-1.76□□□□□ -2.69
SMC1BQ8NDV3 U6.97-201ENST00000636904 101 ntBASIC-1.77□□□□□ -2.69
SMC1BQ8NDV3 RNU6-614P-201ENST00000384369 107 ntBASIC-1.78□□□□□ -2.69
SMC1BQ8NDV3 MIR487B-201ENST00000385021 84 ntBASIC-1.78□□□□□ -2.69
SMC1BQ8NDV3 MIR548H1-201ENST00000408610 102 ntBASIC-1.78□□□□□ -2.69
SMC1BQ8NDV3 U6.59-201ENST00000615686 107 ntBASIC-1.78□□□□□ -2.69
SMC1BQ8NDV3 RNU6-980P-201ENST00000516925 103 ntBASIC-1.81□□□□□ -2.7
SMC1BQ8NDV3 RNU6-176P-201ENST00000517196 105 ntBASIC-1.81□□□□□ -2.7
SMC1BQ8NDV3 SNORD18C-201ENST00000362704 69 ntBASIC-1.82□□□□□ -2.7
SMC1BQ8NDV3 MIR548N-201ENST00000408742 75 ntBASIC-1.82□□□□□ -2.7
SMC1BQ8NDV3 RNU6-300P-201ENST00000459080 104 ntBASIC-1.84□□□□□ -2.7
SMC1BQ8NDV3 RNU6-695P-201ENST00000391157 104 ntBASIC-1.85□□□□□ -2.71
SMC1BQ8NDV3 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.85□□□□□ -2.71
SMC1BQ8NDV3 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.88□□□□□ -2.71
SMC1BQ8NDV3 RNU6-742P-201ENST00000365289 107 ntBASIC-1.89□□□□□ -2.71
SMC1BQ8NDV3 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.9□□□□□ -2.71
SMC1BQ8NDV3 RNU6-936P-201ENST00000384005 107 ntBASIC-1.9□□□□□ -2.71
SMC1BQ8NDV3 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.91□□□□□ -2.72
SMC1BQ8NDV3 MIR4756-201ENST00000577874 78 ntBASIC-1.92□□□□□ -2.72
SMC1BQ8NDV3 MTND4LP19-201ENST00000403051 166 ntBASIC-1.93□□□□□ -2.72
SMC1BQ8NDV3 AC108019.1-201ENST00000512540 175 ntBASIC-1.93□□□□□ -2.72
SMC1BQ8NDV3 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.93□□□□□ -2.72
SMC1BQ8NDV3 RNU6-808P-201ENST00000391233 108 ntBASIC-1.94□□□□□ -2.72
SMC1BQ8NDV3 RNU6-118P-201ENST00000516552 102 ntBASIC-1.94□□□□□ -2.72
SMC1BQ8NDV3 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.94□□□□□ -2.72
SMC1BQ8NDV3 MIR496-201ENST00000385226 102 ntBASIC-1.95□□□□□ -2.72
SMC1BQ8NDV3 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.96□□□□□ -2.72
SMC1BQ8NDV3 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.96□□□□□ -2.72
SMC1BQ8NDV3 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.96□□□□□ -2.72
SMC1BQ8NDV3 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.97□□□□□ -2.72
SMC1BQ8NDV3 MIR581-201ENST00000384895 96 ntBASIC-1.97□□□□□ -2.72
SMC1BQ8NDV3 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.98□□□□□ -2.73
SMC1BQ8NDV3 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.99□□□□□ -2.73
SMC1BQ8NDV3 MIR548AL-201ENST00000578416 97 ntBASIC-1.99□□□□□ -2.73
SMC1BQ8NDV3 MIR3123-201ENST00000583417 75 ntBASIC-2□□□□□ -2.73
SMC1BQ8NDV3 MIR379-201ENST00000362218 67 ntBASIC-2.01□□□□□ -2.73
SMC1BQ8NDV3 RNY4-201ENST00000516507 96 ntBASIC-2.01□□□□□ -2.73
SMC1BQ8NDV3 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.02□□□□□ -2.73
SMC1BQ8NDV3 RNU6-753P-201ENST00000363926 107 ntBASIC-2.02□□□□□ -2.73
SMC1BQ8NDV3 MIR664B-201ENST00000626756 61 ntBASIC-2.03□□□□□ -2.73
SMC1BQ8NDV3 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.04□□□□□ -2.74
SMC1BQ8NDV3 MIR4317-201ENST00000637586 65 ntBASIC-2.04□□□□□ -2.74
SMC1BQ8NDV3 RNU6-838P-201ENST00000363399 108 ntBASIC-2.06□□□□□ -2.74
SMC1BQ8NDV3 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.06□□□□□ -2.74
SMC1BQ8NDV3 RNU6-841P-201ENST00000383872 107 ntBASIC-2.07□□□□□ -2.74
SMC1BQ8NDV3 RNU6-1204P-201ENST00000363948 107 ntBASIC-2.08□□□□□ -2.74
SMC1BQ8NDV3 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.08□□□□□ -2.74
SMC1BQ8NDV3 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.08□□□□□ -2.74
SMC1BQ8NDV3 MIR3139-201ENST00000579145 76 ntBASIC-2.08□□□□□ -2.74
SMC1BQ8NDV3 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.09□□□□□ -2.74
SMC1BQ8NDV3 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.09□□□□□ -2.74
SMC1BQ8NDV3 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.13□□□□□ -2.75
SMC1BQ8NDV3 MT-TM-201ENST00000387377 68 ntBASIC-2.14□□□□□ -2.75
SMC1BQ8NDV3 RNA5SP405-201ENST00000363059 114 ntBASIC-2.15□□□□□ -2.75
SMC1BQ8NDV3 RNU6-194P-201ENST00000363862 105 ntBASIC-2.17□□□□□ -2.76
SMC1BQ8NDV3 MIR548AM-201ENST00000584298 74 ntBASIC-2.17□□□□□ -2.76
SMC1BQ8NDV3 RNU6-930P-201ENST00000390938 100 ntBASIC-2.18□□□□□ -2.76
SMC1BQ8NDV3 SNORD54-201ENST00000459159 67 ntBASIC-2.18□□□□□ -2.76
SMC1BQ8NDV3 RNU6-68P-201ENST00000516576 104 ntBASIC-2.2□□□□□ -2.76
SMC1BQ8NDV3 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.22□□□□□ -2.76
SMC1BQ8NDV3 RNU4-88P-201ENST00000411220 86 ntBASIC-2.22□□□□□ -2.76
SMC1BQ8NDV3 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.22□□□□□ -2.76
SMC1BQ8NDV3 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.23□□□□□ -2.77
SMC1BQ8NDV3 RNU6-822P-201ENST00000362707 106 ntBASIC-2.24□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 222.5 ms