Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.88□□□□□ -2.71
SDC3O75056 SNORD60-201ENST00000383903 83 ntBASIC-1.88□□□□□ -2.71
SDC3O75056 MIR581-201ENST00000384895 96 ntBASIC-1.88□□□□□ -2.71
SDC3O75056 SNORD78.1-201ENST00000390866 65 ntBASIC-1.88□□□□□ -2.71
SDC3O75056 RNU6-530P-201ENST00000391180 107 ntBASIC-1.88□□□□□ -2.71
SDC3O75056 AC103706.3-201ENST00000636297 85 ntBASIC-1.88□□□□□ -2.71
SDC3O75056 MIR4756-201ENST00000577874 78 ntBASIC-1.89□□□□□ -2.71
SDC3O75056 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.9□□□□□ -2.71
SDC3O75056 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.91□□□□□ -2.72
SDC3O75056 RNU6-800P-201ENST00000384473 103 ntBASIC-1.92□□□□□ -2.72
SDC3O75056 SNORA17.4-201ENST00000391287 132 ntBASIC-1.92□□□□□ -2.72
SDC3O75056 MIR548N-201ENST00000408742 75 ntBASIC-1.92□□□□□ -2.72
SDC3O75056 snoU13.10-201ENST00000459301 103 ntBASIC-1.92□□□□□ -2.72
SDC3O75056 MIR466-201ENST00000580653 84 ntBASIC-1.92□□□□□ -2.72
SDC3O75056 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.93□□□□□ -2.72
SDC3O75056 AL451105.1-201ENST00000450005 189 ntBASIC-1.93□□□□□ -2.72
SDC3O75056 MIR3938-201ENST00000582157 103 ntBASIC-1.93□□□□□ -2.72
SDC3O75056 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.93□□□□□ -2.72
SDC3O75056 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.94□□□□□ -2.72
SDC3O75056 RNU6-361P-201ENST00000364454 107 ntBASIC-1.94□□□□□ -2.72
SDC3O75056 RNU4-88P-201ENST00000411220 86 ntBASIC-1.94□□□□□ -2.72
SDC3O75056 MIR548W-201ENST00000581970 74 ntBASIC-1.94□□□□□ -2.72
SDC3O75056 MIR4679-1-201ENST00000637619 75 ntBASIC-1.94□□□□□ -2.72
SDC3O75056 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.95□□□□□ -2.72
SDC3O75056 MIR664B-201ENST00000626756 61 ntBASIC-1.95□□□□□ -2.72
SDC3O75056 SNORD45.2-201ENST00000363552 72 ntBASIC-1.96□□□□□ -2.72
SDC3O75056 MIR4426-201ENST00000640330 63 ntBASIC-1.96□□□□□ -2.72
SDC3O75056 RNU6-980P-201ENST00000516925 103 ntBASIC-1.97□□□□□ -2.72
SDC3O75056 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.98□□□□□ -2.73
SDC3O75056 RNU6-776P-201ENST00000364403 104 ntBASIC-1.99□□□□□ -2.73
SDC3O75056 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.99□□□□□ -2.73
SDC3O75056 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.99□□□□□ -2.73
SDC3O75056 AC110620.1-201ENST00000416042 228 ntBASIC-2□□□□□ -2.73
SDC3O75056 MIR1302-4-201ENST00000408701 150 ntBASIC-2.01□□□□□ -2.73
SDC3O75056 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.02□□□□□ -2.73
SDC3O75056 RNU6-419P-201ENST00000517030 63 ntBASIC-2.02□□□□□ -2.73
SDC3O75056 MIR4662A-201ENST00000637499 67 ntBASIC-2.02□□□□□ -2.73
SDC3O75056 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.03□□□□□ -2.73
SDC3O75056 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.03□□□□□ -2.73
SDC3O75056 RNU6-119P-201ENST00000364882 107 ntBASIC-2.04□□□□□ -2.74
SDC3O75056 RNU6-300P-201ENST00000459080 104 ntBASIC-2.04□□□□□ -2.74
SDC3O75056 Y_RNA.386-201ENST00000383913 105 ntBASIC-2.06□□□□□ -2.74
SDC3O75056 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.06□□□□□ -2.74
SDC3O75056 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.07□□□□□ -2.74
SDC3O75056 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.07□□□□□ -2.74
SDC3O75056 RNU6-590P-201ENST00000365039 107 ntBASIC-2.07□□□□□ -2.74
SDC3O75056 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.08□□□□□ -2.74
SDC3O75056 RNU6-742P-201ENST00000365289 107 ntBASIC-2.08□□□□□ -2.74
SDC3O75056 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.08□□□□□ -2.74
SDC3O75056 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.08□□□□□ -2.74
SDC3O75056 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.09□□□□□ -2.74
SDC3O75056 RNU6-68P-201ENST00000516576 104 ntBASIC-2.1□□□□□ -2.75
SDC3O75056 MIR379-201ENST00000362218 67 ntBASIC-2.11□□□□□ -2.75
SDC3O75056 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.11□□□□□ -2.75
SDC3O75056 AC097484.2-201ENST00000509147 251 ntBASIC-2.11□□□□□ -2.75
SDC3O75056 RNA5SP405-201ENST00000363059 114 ntBASIC-2.12□□□□□ -2.75
SDC3O75056 RNU6-912P-201ENST00000363800 104 ntBASIC-2.12□□□□□ -2.75
SDC3O75056 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.12□□□□□ -2.75
SDC3O75056 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.12□□□□□ -2.75
SDC3O75056 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.13□□□□□ -2.75
SDC3O75056 RNU6-471P-201ENST00000383944 106 ntBASIC-2.13□□□□□ -2.75
SDC3O75056 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.13□□□□□ -2.75
SDC3O75056 AC114801.3-201ENST00000510231 177 ntBASIC-2.13□□□□□ -2.75
SDC3O75056 RNU6-118P-201ENST00000516552 102 ntBASIC-2.13□□□□□ -2.75
SDC3O75056 RNU6-176P-201ENST00000517196 105 ntBASIC-2.13□□□□□ -2.75
SDC3O75056 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.14□□□□□ -2.75
SDC3O75056 RNU6-194P-201ENST00000363862 105 ntBASIC-2.15□□□□□ -2.75
SDC3O75056 Y_RNA.685-201ENST00000516532 108 ntBASIC-2.15□□□□□ -2.75
SDC3O75056 SNORD113-3-201ENST00000364830 72 ntBASIC-2.16□□□□□ -2.76
SDC3O75056 MIR548X-201ENST00000580069 75 ntBASIC-2.16□□□□□ -2.76
SDC3O75056 FTX_4.1-201ENST00000616291 147 ntBASIC-2.17□□□□□ -2.76
SDC3O75056 RNU6-446P-201ENST00000362827 106 ntBASIC-2.18□□□□□ -2.76
SDC3O75056 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.18□□□□□ -2.76
SDC3O75056 MIR496-201ENST00000385226 102 ntBASIC-2.19□□□□□ -2.76
SDC3O75056 MIR4748-201ENST00000578076 82 ntBASIC-2.21□□□□□ -2.76
SDC3O75056 RNU6-1275P-201ENST00000391087 107 ntBASIC-2.22□□□□□ -2.76
SDC3O75056 MIR3139-201ENST00000579145 76 ntBASIC-2.22□□□□□ -2.76
SDC3O75056 MIR1254-1-201ENST00000408257 97 ntBASIC-2.24□□□□□ -2.77
SDC3O75056 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.25□□□□□ -2.77
SDC3O75056 RNY4P7-201ENST00000364600 96 ntBASIC-2.26□□□□□ -2.77
SDC3O75056 SNORD113-4-201ENST00000364802 75 ntBASIC-2.27□□□□□ -2.77
SDC3O75056 MIR633-201ENST00000384821 98 ntBASIC-2.27□□□□□ -2.77
SDC3O75056 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.27□□□□□ -2.77
SDC3O75056 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.27□□□□□ -2.77
SDC3O75056 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.28□□□□□ -2.77
SDC3O75056 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.28□□□□□ -2.77
SDC3O75056 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.29□□□□□ -2.78
SDC3O75056 RNU6-829P-201ENST00000363700 112 ntBASIC-2.32□□□□□ -2.78
SDC3O75056 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.32□□□□□ -2.78
SDC3O75056 MT-TM-201ENST00000387377 68 ntBASIC-2.33□□□□□ -2.78
SDC3O75056 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.33□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 549 ms