Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 AC104692.1-201ENST00000472406 90 ntBASIC-0.03□□□□□ -2.41
USP40Q9NVE5 MIR4426-201ENST00000640330 63 ntBASIC-0.03□□□□□ -2.41
USP40Q9NVE5 SNORA18.1-201ENST00000363418 128 ntBASIC-0.04□□□□□ -2.42
USP40Q9NVE5 RNU6-59P-201ENST00000384787 107 ntBASIC-0.04□□□□□ -2.42
USP40Q9NVE5 MIR1295B-201ENST00000636144 60 ntBASIC-0.04□□□□□ -2.42
USP40Q9NVE5 MIR4788-201ENST00000639104 80 ntBASIC-0.04□□□□□ -2.42
USP40Q9NVE5 MIR202-201ENST00000362219 110 ntBASIC-0.05□□□□□ -2.42
USP40Q9NVE5 RNU6-822P-201ENST00000362707 106 ntBASIC-0.05□□□□□ -2.42
USP40Q9NVE5 MIR4802-201ENST00000581881 80 ntBASIC-0.05□□□□□ -2.42
USP40Q9NVE5 MIR3666-201ENST00000607845 111 ntBASIC-0.05□□□□□ -2.42
USP40Q9NVE5 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.06□□□□□ -2.42
USP40Q9NVE5 RNA5SP300-201ENST00000391197 107 ntBASIC-0.06□□□□□ -2.42
USP40Q9NVE5 RNU6-361P-201ENST00000364454 107 ntBASIC-0.07□□□□□ -2.42
USP40Q9NVE5 MIR4263-201ENST00000584745 83 ntBASIC-0.07□□□□□ -2.42
USP40Q9NVE5 SNORD4A-201ENST00000459174 72 ntBASIC-0.08□□□□□ -2.42
USP40Q9NVE5 MIR4645-201ENST00000583158 77 ntBASIC-0.09□□□□□ -2.42
USP40Q9NVE5 MIR204-201ENST00000385200 110 ntBASIC-0.1□□□□□ -2.43
USP40Q9NVE5 MIR507-201ENST00000385234 94 ntBASIC-0.1□□□□□ -2.43
USP40Q9NVE5 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.11□□□□□ -2.43
USP40Q9NVE5 RNU6-724P-201ENST00000390958 105 ntBASIC-0.11□□□□□ -2.43
USP40Q9NVE5 RNU6-1047P-201ENST00000364418 107 ntBASIC-0.12□□□□□ -2.43
USP40Q9NVE5 SNORA32.1-201ENST00000364514 115 ntBASIC-0.12□□□□□ -2.43
USP40Q9NVE5 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.12□□□□□ -2.43
USP40Q9NVE5 RNA5SP26-201ENST00000362406 119 ntBASIC-0.13□□□□□ -2.43
USP40Q9NVE5 SNORA17.4-201ENST00000391287 132 ntBASIC-0.13□□□□□ -2.43
USP40Q9NVE5 SNORA13-201ENST00000458790 133 ntBASIC-0.13□□□□□ -2.43
USP40Q9NVE5 IGLVI-20-201ENST00000519296 130 ntBASIC-0.13□□□□□ -2.43
USP40Q9NVE5 AC013734.1-201ENST00000619329 111 ntBASIC-0.13□□□□□ -2.43
USP40Q9NVE5 AC090616.4-201ENST00000448026 115 ntBASIC-0.14□□□□□ -2.43
USP40Q9NVE5 Y_RNA.345-201ENST00000365384 92 ntBASIC-0.15□□□□□ -2.43
USP40Q9NVE5 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.15□□□□□ -2.43
USP40Q9NVE5 SNORD114-31-201ENST00000363219 75 ntBASIC-0.16□□□□□ -2.44
USP40Q9NVE5 RNU6-563P-201ENST00000364872 108 ntBASIC-0.16□□□□□ -2.44
USP40Q9NVE5 MIR581-201ENST00000384895 96 ntBASIC-0.16□□□□□ -2.44
USP40Q9NVE5 RNU6-300P-201ENST00000459080 104 ntBASIC-0.16□□□□□ -2.44
USP40Q9NVE5 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.16□□□□□ -2.44
USP40Q9NVE5 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.16□□□□□ -2.44
USP40Q9NVE5 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.18□□□□□ -2.44
USP40Q9NVE5 MIR4317-201ENST00000637586 65 ntBASIC-0.19□□□□□ -2.44
USP40Q9NVE5 RNU6-431P-201ENST00000383874 107 ntBASIC-0.2□□□□□ -2.44
USP40Q9NVE5 MIR548N-201ENST00000408742 75 ntBASIC-0.2□□□□□ -2.44
USP40Q9NVE5 MIR4436A-201ENST00000585278 85 ntBASIC-0.2□□□□□ -2.44
USP40Q9NVE5 MIR214-201ENST00000385214 110 ntBASIC-0.21□□□□□ -2.44
USP40Q9NVE5 Z95118.1-201ENST00000421372 247 ntBASIC-0.21□□□□□ -2.44
USP40Q9NVE5 U6.103-201ENST00000637085 61 ntBASIC-0.21□□□□□ -2.44
USP40Q9NVE5 MIR147A-201ENST00000385079 72 ntBASIC-0.22□□□□□ -2.44
USP40Q9NVE5 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.23□□□□□ -2.45
USP40Q9NVE5 RNU6-68P-201ENST00000516576 104 ntBASIC-0.23□□□□□ -2.45
USP40Q9NVE5 MIR4493-201ENST00000584016 73 ntBASIC-0.23□□□□□ -2.45
USP40Q9NVE5 AP001180.6-201ENST00000584918 159 ntBASIC-0.23□□□□□ -2.45
USP40Q9NVE5 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.24□□□□□ -2.45
USP40Q9NVE5 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.24□□□□□ -2.45
USP40Q9NVE5 RNY1P9-201ENST00000532431 109 ntBASIC-0.24□□□□□ -2.45
USP40Q9NVE5 AC120024.2-201ENST00000576526 175 ntBASIC-0.24□□□□□ -2.45
USP40Q9NVE5 SNORD64-201ENST00000386683 67 ntBASIC-0.25□□□□□ -2.45
USP40Q9NVE5 SNORA3B-201ENST00000391305 131 ntBASIC-0.25□□□□□ -2.45
USP40Q9NVE5 MIR8064-201ENST00000612863 90 ntBASIC-0.25□□□□□ -2.45
USP40Q9NVE5 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.26□□□□□ -2.45
USP40Q9NVE5 SNORD60-201ENST00000383903 83 ntBASIC-0.26□□□□□ -2.45
USP40Q9NVE5 RNA5SP25-201ENST00000410815 110 ntBASIC-0.26□□□□□ -2.45
USP40Q9NVE5 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-0.26□□□□□ -2.45
USP40Q9NVE5 U6.97-201ENST00000636904 101 ntBASIC-0.26□□□□□ -2.45
USP40Q9NVE5 MIR196A2-201ENST00000385189 110 ntBASIC-0.27□□□□□ -2.45
USP40Q9NVE5 AC021146.6-201ENST00000514659 117 ntBASIC-0.27□□□□□ -2.45
USP40Q9NVE5 RNU6-758P-201ENST00000516292 89 ntBASIC-0.27□□□□□ -2.45
USP40Q9NVE5 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.28□□□□□ -2.45
USP40Q9NVE5 snoU13.19-201ENST00000459148 104 ntBASIC-0.3□□□□□ -2.46
USP40Q9NVE5 SNORD126-201ENST00000459475 77 ntBASIC-0.3□□□□□ -2.46
USP40Q9NVE5 AC138207.3-201ENST00000585289 166 ntBASIC-0.3□□□□□ -2.46
USP40Q9NVE5 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.31□□□□□ -2.46
USP40Q9NVE5 RNU6-284P-201ENST00000411105 106 ntBASIC-0.31□□□□□ -2.46
USP40Q9NVE5 RNU7-134P-201ENST00000458997 64 ntBASIC-0.31□□□□□ -2.46
USP40Q9NVE5 RNU6-176P-201ENST00000517196 105 ntBASIC-0.31□□□□□ -2.46
USP40Q9NVE5 MIR6818-201ENST00000621576 65 ntBASIC-0.31□□□□□ -2.46
USP40Q9NVE5 SNORD114-14-201ENST00000362723 75 ntBASIC-0.32□□□□□ -2.46
USP40Q9NVE5 MIR604-201ENST00000384880 94 ntBASIC-0.32□□□□□ -2.46
USP40Q9NVE5 MIR23C-201ENST00000579846 100 ntBASIC-0.32□□□□□ -2.46
USP40Q9NVE5 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.32□□□□□ -2.46
USP40Q9NVE5 SNORD114-28-201ENST00000363610 72 ntBASIC-0.33□□□□□ -2.46
USP40Q9NVE5 MIR382-201ENST00000637119 76 ntBASIC-0.33□□□□□ -2.46
USP40Q9NVE5 MIR101-1-201ENST00000362265 75 ntBASIC-0.34□□□□□ -2.46
USP40Q9NVE5 SNORD14C-201ENST00000365382 88 ntBASIC-0.34□□□□□ -2.46
USP40Q9NVE5 RNU6-320P-201ENST00000516511 106 ntBASIC-0.35□□□□□ -2.47
USP40Q9NVE5 RNA5SP275-201ENST00000363936 118 ntBASIC-0.36□□□□□ -2.47
USP40Q9NVE5 RNA5SP368-201ENST00000364298 116 ntBASIC-0.36□□□□□ -2.47
USP40Q9NVE5 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.36□□□□□ -2.47
USP40Q9NVE5 SNORD114-25-201ENST00000363742 72 ntBASIC-0.37□□□□□ -2.47
USP40Q9NVE5 RNU6-695P-201ENST00000391157 104 ntBASIC-0.37□□□□□ -2.47
USP40Q9NVE5 SNORD114-15-201ENST00000364687 72 ntBASIC-0.39□□□□□ -2.47
USP40Q9NVE5 SNORD111B-201ENST00000408587 80 ntBASIC-0.39□□□□□ -2.47
USP40Q9NVE5 AL627230.5-201ENST00000619807 58 ntBASIC-0.39□□□□□ -2.47
USP40Q9NVE5 RNU6-79P-201ENST00000362511 107 ntBASIC-0.4□□□□□ -2.47
USP40Q9NVE5 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.4□□□□□ -2.47
USP40Q9NVE5 AL500527.2-201ENST00000454105 95 ntBASIC-0.4□□□□□ -2.47
USP40Q9NVE5 MIR3681-201ENST00000580089 72 ntBASIC-0.4□□□□□ -2.47
USP40Q9NVE5 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.4□□□□□ -2.47
USP40Q9NVE5 SNORD95.1-201ENST00000364099 68 ntBASIC-0.41□□□□□ -2.48
USP40Q9NVE5 AC018880.2-201ENST00000414265 201 ntBASIC-0.41□□□□□ -2.48
USP40Q9NVE5 RNU6-30P-201ENST00000384561 107 ntBASIC-0.42□□□□□ -2.48
USP40Q9NVE5 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.43□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 336.9 ms