Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNU6-706P-201ENST00000517229 104 ntBASIC-1.47□□□□□ -2.64
CCDC3Q9BQI4 RNU6-663P-201ENST00000391105 106 ntBASIC-1.48□□□□□ -2.65
CCDC3Q9BQI4 MIR1255A-201ENST00000408338 113 ntBASIC-1.48□□□□□ -2.65
CCDC3Q9BQI4 RNA5SP461-201ENST00000516451 104 ntBASIC-1.48□□□□□ -2.65
CCDC3Q9BQI4 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.49□□□□□ -2.65
CCDC3Q9BQI4 RNU6-247P-201ENST00000362636 107 ntBASIC-1.5□□□□□ -2.65
CCDC3Q9BQI4 SNORD78.1-201ENST00000390866 65 ntBASIC-1.5□□□□□ -2.65
CCDC3Q9BQI4 RNU7-151P-201ENST00000516930 53 ntBASIC-1.5□□□□□ -2.65
CCDC3Q9BQI4 MIR6502-201ENST00000617296 76 ntBASIC-1.5□□□□□ -2.65
CCDC3Q9BQI4 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.51□□□□□ -2.65
CCDC3Q9BQI4 MIR579-201ENST00000385221 98 ntBASIC-1.51□□□□□ -2.65
CCDC3Q9BQI4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-1.51□□□□□ -2.65
CCDC3Q9BQI4 AC138207.3-201ENST00000585289 166 ntBASIC-1.51□□□□□ -2.65
CCDC3Q9BQI4 SNORA25.4-201ENST00000363666 124 ntBASIC-1.52□□□□□ -2.65
CCDC3Q9BQI4 RNU6-258P-201ENST00000390884 101 ntBASIC-1.52□□□□□ -2.65
CCDC3Q9BQI4 RNU6-995P-201ENST00000391244 107 ntBASIC-1.52□□□□□ -2.65
CCDC3Q9BQI4 RNU6-172P-201ENST00000411000 93 ntBASIC-1.52□□□□□ -2.65
CCDC3Q9BQI4 MIR4520-1-201ENST00000582609 70 ntBASIC-1.52□□□□□ -2.65
CCDC3Q9BQI4 RNU6-79P-201ENST00000362511 107 ntBASIC-1.54□□□□□ -2.66
CCDC3Q9BQI4 SNORD60.1-201ENST00000362451 73 ntBASIC-1.55□□□□□ -2.66
CCDC3Q9BQI4 Y_RNA.699-201ENST00000516803 93 ntBASIC-1.55□□□□□ -2.66
CCDC3Q9BQI4 RNU7-160P-201ENST00000516660 62 ntBASIC-1.56□□□□□ -2.66
CCDC3Q9BQI4 RNU6-539P-201ENST00000516665 103 ntBASIC-1.56□□□□□ -2.66
CCDC3Q9BQI4 HLA-S-202ENST00000425174 53 ntBASIC-1.57□□□□□ -2.66
CCDC3Q9BQI4 MIR7978-201ENST00000636158 59 ntBASIC-1.57□□□□□ -2.66
CCDC3Q9BQI4 MIR125B1-201ENST00000385236 88 ntBASIC-1.58□□□□□ -2.66
CCDC3Q9BQI4 SNORD30.1-201ENST00000391309 70 ntBASIC-1.58□□□□□ -2.66
CCDC3Q9BQI4 SNORD63.2-201ENST00000516303 64 ntBASIC-1.58□□□□□ -2.66
CCDC3Q9BQI4 AC120024.2-201ENST00000576526 175 ntBASIC-1.58□□□□□ -2.66
CCDC3Q9BQI4 MIR5591-201ENST00000578248 65 ntBASIC-1.58□□□□□ -2.66
CCDC3Q9BQI4 MTRNR2L9-201ENST00000622562 75 ntBASIC-1.58□□□□□ -2.66
CCDC3Q9BQI4 SNORA25.5-201ENST00000363782 126 ntBASIC-1.59□□□□□ -2.66
CCDC3Q9BQI4 RNU6-669P-201ENST00000365575 107 ntBASIC-1.59□□□□□ -2.66
CCDC3Q9BQI4 RNU6-400P-201ENST00000391173 106 ntBASIC-1.59□□□□□ -2.66
CCDC3Q9BQI4 RNU6-563P-201ENST00000364872 108 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 RNU6-649P-201ENST00000384463 107 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 RNU6-122P-201ENST00000516818 107 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 AC103706.3-201ENST00000636297 85 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.6□□□□□ -2.67
CCDC3Q9BQI4 SNORA27.2-201ENST00000363365 126 ntBASIC-1.61□□□□□ -2.67
CCDC3Q9BQI4 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.61□□□□□ -2.67
CCDC3Q9BQI4 MIR4511-201ENST00000582784 87 ntBASIC-1.61□□□□□ -2.67
CCDC3Q9BQI4 MIR4770-201ENST00000579149 58 ntBASIC-1.62□□□□□ -2.67
CCDC3Q9BQI4 AC005520.4-201ENST00000604337 90 ntBASIC-1.62□□□□□ -2.67
CCDC3Q9BQI4 MIR7110-201ENST00000612638 86 ntBASIC-1.62□□□□□ -2.67
CCDC3Q9BQI4 U4.2-201ENST00000618561 85 ntBASIC-1.62□□□□□ -2.67
CCDC3Q9BQI4 U6.111-201ENST00000636093 83 ntBASIC-1.62□□□□□ -2.67
CCDC3Q9BQI4 MIR4662A-201ENST00000637499 67 ntBASIC-1.62□□□□□ -2.67
CCDC3Q9BQI4 MIR1285-2-201ENST00000408311 88 ntBASIC-1.63□□□□□ -2.67
CCDC3Q9BQI4 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.64□□□□□ -2.67
CCDC3Q9BQI4 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.64□□□□□ -2.67
CCDC3Q9BQI4 RNU6-974P-201ENST00000384099 108 ntBASIC-1.64□□□□□ -2.67
CCDC3Q9BQI4 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.64□□□□□ -2.67
CCDC3Q9BQI4 MIR4679-1-201ENST00000637619 75 ntBASIC-1.64□□□□□ -2.67
CCDC3Q9BQI4 RNU6-231P-201ENST00000517122 103 ntBASIC-1.65□□□□□ -2.67
CCDC3Q9BQI4 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.66□□□□□ -2.68
CCDC3Q9BQI4 RNA5SP225-201ENST00000410874 135 ntBASIC-1.67□□□□□ -2.68
CCDC3Q9BQI4 MIR365A-201ENST00000362260 87 ntBASIC-1.68□□□□□ -2.68
CCDC3Q9BQI4 Y_RNA.139-201ENST00000363464 102 ntBASIC-1.68□□□□□ -2.68
CCDC3Q9BQI4 RNA5SP180-201ENST00000516181 101 ntBASIC-1.68□□□□□ -2.68
CCDC3Q9BQI4 RNU6-940P-201ENST00000363433 104 ntBASIC-1.69□□□□□ -2.68
CCDC3Q9BQI4 RNU6-810P-201ENST00000364001 107 ntBASIC-1.69□□□□□ -2.68
CCDC3Q9BQI4 RNU6-776P-201ENST00000364403 104 ntBASIC-1.69□□□□□ -2.68
CCDC3Q9BQI4 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.69□□□□□ -2.68
CCDC3Q9BQI4 SNORD116.2-201ENST00000391251 93 ntBASIC-1.69□□□□□ -2.68
CCDC3Q9BQI4 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.7□□□□□ -2.68
CCDC3Q9BQI4 SNORD114-3-201ENST00000364969 75 ntBASIC-1.7□□□□□ -2.68
CCDC3Q9BQI4 RNU6-695P-201ENST00000391157 104 ntBASIC-1.7□□□□□ -2.68
CCDC3Q9BQI4 MIR548H1-201ENST00000408610 102 ntBASIC-1.7□□□□□ -2.68
CCDC3Q9BQI4 RNU7-119P-201ENST00000459279 63 ntBASIC-1.7□□□□□ -2.68
CCDC3Q9BQI4 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.7□□□□□ -2.68
CCDC3Q9BQI4 AC013734.1-201ENST00000619329 111 ntBASIC-1.7□□□□□ -2.68
CCDC3Q9BQI4 RNU6-828P-201ENST00000364876 107 ntBASIC-1.71□□□□□ -2.68
CCDC3Q9BQI4 RNA5SP86-201ENST00000390869 98 ntBASIC-1.71□□□□□ -2.68
CCDC3Q9BQI4 MIR1207-201ENST00000408249 87 ntBASIC-1.72□□□□□ -2.68
CCDC3Q9BQI4 RNY3P8-201ENST00000411366 126 ntBASIC-1.72□□□□□ -2.68
CCDC3Q9BQI4 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.73□□□□□ -2.69
CCDC3Q9BQI4 RNU6-800P-201ENST00000384473 103 ntBASIC-1.73□□□□□ -2.69
CCDC3Q9BQI4 MIR4441-201ENST00000582623 100 ntBASIC-1.73□□□□□ -2.69
CCDC3Q9BQI4 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.74□□□□□ -2.69
CCDC3Q9BQI4 U6.97-201ENST00000636904 101 ntBASIC-1.74□□□□□ -2.69
CCDC3Q9BQI4 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.75□□□□□ -2.69
CCDC3Q9BQI4 SNORA40B-201ENST00000385573 128 ntBASIC-1.75□□□□□ -2.69
CCDC3Q9BQI4 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.76□□□□□ -2.69
CCDC3Q9BQI4 RNU6-520P-201ENST00000384717 104 ntBASIC-1.77□□□□□ -2.69
CCDC3Q9BQI4 MIR487B-201ENST00000385021 84 ntBASIC-1.77□□□□□ -2.69
CCDC3Q9BQI4 RNU6-226P-201ENST00000363778 107 ntBASIC-1.78□□□□□ -2.69
CCDC3Q9BQI4 MIR3123-201ENST00000583417 75 ntBASIC-1.78□□□□□ -2.69
CCDC3Q9BQI4 MIR3938-201ENST00000582157 103 ntBASIC-1.79□□□□□ -2.7
CCDC3Q9BQI4 MIR1246-201ENST00000636535 73 ntBASIC-1.79□□□□□ -2.7
CCDC3Q9BQI4 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.8□□□□□ -2.7
CCDC3Q9BQI4 AC110620.1-201ENST00000416042 228 ntBASIC-1.8□□□□□ -2.7
CCDC3Q9BQI4 SNORA40.16-201ENST00000517238 121 ntBASIC-1.81□□□□□ -2.7
CCDC3Q9BQI4 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.82□□□□□ -2.7
CCDC3Q9BQI4 RNU6-471P-201ENST00000383944 106 ntBASIC-1.83□□□□□ -2.7
CCDC3Q9BQI4 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.83□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 299 ms