Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RNU6-1168P-201ENST00000390831 104 ntBASIC-1.48□□□□□ -2.65
LMX1AQ8TE12 MIR5588-201ENST00000581890 63 ntBASIC-1.48□□□□□ -2.65
LMX1AQ8TE12 MIR2052-201ENST00000636055 55 ntBASIC-1.48□□□□□ -2.65
LMX1AQ8TE12 SNORD60.1-201ENST00000362451 73 ntBASIC-1.49□□□□□ -2.65
LMX1AQ8TE12 Y_RNA.94-201ENST00000363068 106 ntBASIC-1.49□□□□□ -2.65
LMX1AQ8TE12 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.49□□□□□ -2.65
LMX1AQ8TE12 RNU6-979P-201ENST00000383896 107 ntBASIC-1.49□□□□□ -2.65
LMX1AQ8TE12 RNU6-1056P-201ENST00000383996 107 ntBASIC-1.49□□□□□ -2.65
LMX1AQ8TE12 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.49□□□□□ -2.65
LMX1AQ8TE12 RNU6-118P-201ENST00000516552 102 ntBASIC-1.49□□□□□ -2.65
LMX1AQ8TE12 MIR3139-201ENST00000579145 76 ntBASIC-1.49□□□□□ -2.65
LMX1AQ8TE12 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.5□□□□□ -2.65
LMX1AQ8TE12 RNU6-520P-201ENST00000384717 104 ntBASIC-1.5□□□□□ -2.65
LMX1AQ8TE12 MIR548N-201ENST00000408742 75 ntBASIC-1.5□□□□□ -2.65
LMX1AQ8TE12 Y_RNA.607-201ENST00000410597 98 ntBASIC-1.5□□□□□ -2.65
LMX1AQ8TE12 RNU6-194P-201ENST00000363862 105 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 RNU6-755P-201ENST00000364400 103 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 SNORD113-3-201ENST00000364830 72 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 RNA5SP173-201ENST00000364857 136 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 RNU6-22P-201ENST00000384355 107 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 RNU6-649P-201ENST00000384463 107 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 RNU6-70P-201ENST00000516438 60 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 RNU6-687P-201ENST00000516443 89 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 RNU6-231P-201ENST00000517122 103 ntBASIC-1.51□□□□□ -2.65
LMX1AQ8TE12 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.52□□□□□ -2.65
LMX1AQ8TE12 RNU6-147P-201ENST00000383983 107 ntBASIC-1.52□□□□□ -2.65
LMX1AQ8TE12 RNU6-209P-201ENST00000384118 107 ntBASIC-1.52□□□□□ -2.65
LMX1AQ8TE12 SNORA40.16-201ENST00000517238 121 ntBASIC-1.52□□□□□ -2.65
LMX1AQ8TE12 RNU6-92P-201ENST00000605893 104 ntBASIC-1.52□□□□□ -2.65
LMX1AQ8TE12 RNU6-834P-201ENST00000362367 110 ntBASIC-1.53□□□□□ -2.65
LMX1AQ8TE12 SNORD18C-201ENST00000362704 69 ntBASIC-1.53□□□□□ -2.65
LMX1AQ8TE12 RNU6-1131P-201ENST00000364955 107 ntBASIC-1.53□□□□□ -2.65
LMX1AQ8TE12 MIR154-201ENST00000385243 84 ntBASIC-1.53□□□□□ -2.65
LMX1AQ8TE12 MIR1207-201ENST00000408249 87 ntBASIC-1.53□□□□□ -2.65
LMX1AQ8TE12 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.53□□□□□ -2.65
LMX1AQ8TE12 RNU6-789P-201ENST00000517105 102 ntBASIC-1.53□□□□□ -2.65
LMX1AQ8TE12 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.53□□□□□ -2.65
LMX1AQ8TE12 Y_RNA.273-201ENST00000364703 102 ntBASIC-1.54□□□□□ -2.66
LMX1AQ8TE12 RNU6-787P-201ENST00000384032 107 ntBASIC-1.54□□□□□ -2.66
LMX1AQ8TE12 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.54□□□□□ -2.66
LMX1AQ8TE12 SNORD116.2-201ENST00000391251 93 ntBASIC-1.55□□□□□ -2.66
LMX1AQ8TE12 AC097484.2-201ENST00000509147 251 ntBASIC-1.55□□□□□ -2.66
LMX1AQ8TE12 RNU7-160P-201ENST00000516660 62 ntBASIC-1.55□□□□□ -2.66
LMX1AQ8TE12 MIR4748-201ENST00000578076 82 ntBASIC-1.55□□□□□ -2.66
LMX1AQ8TE12 MIR7110-201ENST00000612638 86 ntBASIC-1.55□□□□□ -2.66
LMX1AQ8TE12 RNY4P27-201ENST00000363341 96 ntBASIC-1.56□□□□□ -2.66
LMX1AQ8TE12 RNU6-828P-201ENST00000364876 107 ntBASIC-1.56□□□□□ -2.66
LMX1AQ8TE12 RNU6-1134P-201ENST00000365156 101 ntBASIC-1.56□□□□□ -2.66
LMX1AQ8TE12 MT-TM-201ENST00000387377 68 ntBASIC-1.56□□□□□ -2.66
LMX1AQ8TE12 RNU7-171P-201ENST00000459581 62 ntBASIC-1.56□□□□□ -2.66
LMX1AQ8TE12 RNU6-794P-201ENST00000517261 64 ntBASIC-1.56□□□□□ -2.66
LMX1AQ8TE12 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 RNU6-895P-201ENST00000384125 103 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 SNORA40B-201ENST00000385573 128 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 MT-TR-201ENST00000387439 65 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 RNU6-1154P-201ENST00000391001 104 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 RNU6-530P-201ENST00000391180 107 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 TMSB4XP3-201ENST00000445144 114 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 RNU6-542P-201ENST00000516405 103 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 MIR1245B-201ENST00000636115 69 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.57□□□□□ -2.66
LMX1AQ8TE12 RNU6-912P-201ENST00000363800 104 ntBASIC-1.58□□□□□ -2.66
LMX1AQ8TE12 RNY1P1-201ENST00000364372 112 ntBASIC-1.58□□□□□ -2.66
LMX1AQ8TE12 RNU6-361P-201ENST00000364454 107 ntBASIC-1.58□□□□□ -2.66
LMX1AQ8TE12 SNORA17.4-201ENST00000391287 132 ntBASIC-1.58□□□□□ -2.66
LMX1AQ8TE12 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.58□□□□□ -2.66
LMX1AQ8TE12 RNU6-141P-201ENST00000410499 105 ntBASIC-1.58□□□□□ -2.66
LMX1AQ8TE12 FTX_4.1-201ENST00000616291 147 ntBASIC-1.58□□□□□ -2.66
LMX1AQ8TE12 RNU6-32P-201ENST00000383948 107 ntBASIC-1.59□□□□□ -2.66
LMX1AQ8TE12 RNU6-13P-201ENST00000384248 107 ntBASIC-1.59□□□□□ -2.66
LMX1AQ8TE12 RNU6-12P-201ENST00000384604 107 ntBASIC-1.59□□□□□ -2.66
LMX1AQ8TE12 RNU6-41P-201ENST00000384741 107 ntBASIC-1.59□□□□□ -2.66
LMX1AQ8TE12 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.59□□□□□ -2.66
LMX1AQ8TE12 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.59□□□□□ -2.66
LMX1AQ8TE12 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.6□□□□□ -2.67
LMX1AQ8TE12 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.61□□□□□ -2.67
LMX1AQ8TE12 SNORD60-201ENST00000383903 83 ntBASIC-1.61□□□□□ -2.67
LMX1AQ8TE12 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.61□□□□□ -2.67
LMX1AQ8TE12 MIR466-201ENST00000580653 84 ntBASIC-1.61□□□□□ -2.67
LMX1AQ8TE12 IGLL4P-201ENST00000614590 133 ntBASIC-1.61□□□□□ -2.67
LMX1AQ8TE12 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.61□□□□□ -2.67
LMX1AQ8TE12 MIR494-201ENST00000349529 81 ntBASIC-1.62□□□□□ -2.67
LMX1AQ8TE12 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.62□□□□□ -2.67
LMX1AQ8TE12 RNU6-742P-201ENST00000365289 107 ntBASIC-1.62□□□□□ -2.67
LMX1AQ8TE12 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.62□□□□□ -2.67
LMX1AQ8TE12 RNU6-380P-201ENST00000410207 107 ntBASIC-1.62□□□□□ -2.67
LMX1AQ8TE12 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.62□□□□□ -2.67
LMX1AQ8TE12 MIR4426-201ENST00000640330 63 ntBASIC-1.62□□□□□ -2.67
LMX1AQ8TE12 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.63□□□□□ -2.67
LMX1AQ8TE12 RNU6-1117P-201ENST00000384525 104 ntBASIC-1.63□□□□□ -2.67
LMX1AQ8TE12 RNU6-122P-201ENST00000516818 107 ntBASIC-1.63□□□□□ -2.67
LMX1AQ8TE12 RNA5SP89-201ENST00000410300 108 ntBASIC-1.64□□□□□ -2.67
LMX1AQ8TE12 RNU6-313P-201ENST00000516317 112 ntBASIC-1.64□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 178 ms