Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RNU6-540P-201ENST00000384622 101 ntBASIC-2.38□□□□□ -2.79
CCDC65Q8IXS2 MIR548AI-201ENST00000579940 88 ntBASIC-2.38□□□□□ -2.79
CCDC65Q8IXS2 AC013734.1-201ENST00000619329 111 ntBASIC-2.38□□□□□ -2.79
CCDC65Q8IXS2 RNU6-523P-201ENST00000516304 54 ntBASIC-2.39□□□□□ -2.79
CCDC65Q8IXS2 RNU6-542P-201ENST00000516405 103 ntBASIC-2.39□□□□□ -2.79
CCDC65Q8IXS2 MIR3123-201ENST00000583417 75 ntBASIC-2.39□□□□□ -2.79
CCDC65Q8IXS2 Y_RNA.442-201ENST00000384131 102 ntBASIC-2.4□□□□□ -2.79
CCDC65Q8IXS2 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC-2.4□□□□□ -2.79
CCDC65Q8IXS2 RNU6ATAC17P-201ENST00000516074 71 ntBASIC-2.4□□□□□ -2.79
CCDC65Q8IXS2 MIR4666B-201ENST00000578142 81 ntBASIC-2.4□□□□□ -2.79
CCDC65Q8IXS2 RNU6-974P-201ENST00000384099 108 ntBASIC-2.41□□□□□ -2.8
CCDC65Q8IXS2 RNU6-983P-201ENST00000516004 103 ntBASIC-2.41□□□□□ -2.8
CCDC65Q8IXS2 RNU6-789P-201ENST00000517105 102 ntBASIC-2.41□□□□□ -2.8
CCDC65Q8IXS2 RNU6-92P-201ENST00000605893 104 ntBASIC-2.41□□□□□ -2.8
CCDC65Q8IXS2 MIR494-201ENST00000349529 81 ntBASIC-2.42□□□□□ -2.8
CCDC65Q8IXS2 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.42□□□□□ -2.8
CCDC65Q8IXS2 Y_RNA.291-201ENST00000364886 113 ntBASIC-2.43□□□□□ -2.8
CCDC65Q8IXS2 SNORD114-3-201ENST00000364969 75 ntBASIC-2.43□□□□□ -2.8
CCDC65Q8IXS2 RNU6-1276P-201ENST00000365372 104 ntBASIC-2.43□□□□□ -2.8
CCDC65Q8IXS2 RNU6-841P-201ENST00000383872 107 ntBASIC-2.43□□□□□ -2.8
CCDC65Q8IXS2 RNY4P30-201ENST00000410216 95 ntBASIC-2.43□□□□□ -2.8
CCDC65Q8IXS2 RNU6-787P-201ENST00000384032 107 ntBASIC-2.44□□□□□ -2.8
CCDC65Q8IXS2 SNORD18.1-201ENST00000363807 70 ntBASIC-2.45□□□□□ -2.8
CCDC65Q8IXS2 RNU6-153P-201ENST00000364422 104 ntBASIC-2.45□□□□□ -2.8
CCDC65Q8IXS2 AL603908.1-201ENST00000406098 201 ntBASIC-2.45□□□□□ -2.8
CCDC65Q8IXS2 RNU6-242P-201ENST00000384359 107 ntBASIC-2.46□□□□□ -2.8
CCDC65Q8IXS2 MIR450A2-201ENST00000385022 100 ntBASIC-2.46□□□□□ -2.8
CCDC65Q8IXS2 Y_RNA.616-201ENST00000410835 95 ntBASIC-2.46□□□□□ -2.8
CCDC65Q8IXS2 SNORD60.1-201ENST00000362451 73 ntBASIC-2.47□□□□□ -2.8
CCDC65Q8IXS2 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.47□□□□□ -2.8
CCDC65Q8IXS2 RNY3P8-201ENST00000411366 126 ntBASIC-2.47□□□□□ -2.8
CCDC65Q8IXS2 RNU7-160P-201ENST00000516660 62 ntBASIC-2.47□□□□□ -2.8
CCDC65Q8IXS2 Y_RNA.139-201ENST00000363464 102 ntBASIC-2.48□□□□□ -2.81
CCDC65Q8IXS2 RNU6-1034P-201ENST00000365335 101 ntBASIC-2.48□□□□□ -2.81
CCDC65Q8IXS2 RNU6-406P-201ENST00000516470 107 ntBASIC-2.48□□□□□ -2.81
CCDC65Q8IXS2 Y_RNA.55-201ENST00000362797 102 ntBASIC-2.49□□□□□ -2.81
CCDC65Q8IXS2 MIR548AM-201ENST00000584298 74 ntBASIC-2.49□□□□□ -2.81
CCDC65Q8IXS2 Y_RNA.321-201ENST00000365149 102 ntBASIC-2.5□□□□□ -2.81
CCDC65Q8IXS2 AC108019.1-201ENST00000512540 175 ntBASIC-2.5□□□□□ -2.81
CCDC65Q8IXS2 RNU6-1015P-201ENST00000517121 99 ntBASIC-2.5□□□□□ -2.81
CCDC65Q8IXS2 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-2.5□□□□□ -2.81
CCDC65Q8IXS2 Y_RNA.69-201ENST00000362885 109 ntBASIC-2.51□□□□□ -2.81
CCDC65Q8IXS2 RNU6-411P-201ENST00000384451 107 ntBASIC-2.51□□□□□ -2.81
CCDC65Q8IXS2 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.51□□□□□ -2.81
CCDC65Q8IXS2 MIR4723-201ENST00000585070 81 ntBASIC-2.51□□□□□ -2.81
CCDC65Q8IXS2 MIR7110-201ENST00000612638 86 ntBASIC-2.52□□□□□ -2.81
CCDC65Q8IXS2 U6.97-201ENST00000636904 101 ntBASIC-2.52□□□□□ -2.81
CCDC65Q8IXS2 RNU6-228P-201ENST00000362700 106 ntBASIC-2.53□□□□□ -2.81
CCDC65Q8IXS2 RNU6-294P-201ENST00000364999 102 ntBASIC-2.53□□□□□ -2.81
CCDC65Q8IXS2 Y_RNA.502-201ENST00000384478 113 ntBASIC-2.53□□□□□ -2.81
CCDC65Q8IXS2 RNU6-231P-201ENST00000517122 103 ntBASIC-2.54□□□□□ -2.82
CCDC65Q8IXS2 SNORD19B.1-201ENST00000630615 80 ntBASIC-2.54□□□□□ -2.82
CCDC65Q8IXS2 Y_RNA.443-201ENST00000384135 111 ntBASIC-2.55□□□□□ -2.82
CCDC65Q8IXS2 Y_RNA.694-201ENST00000516677 117 ntBASIC-2.55□□□□□ -2.82
CCDC65Q8IXS2 RNU6-810P-201ENST00000364001 107 ntBASIC-2.56□□□□□ -2.82
CCDC65Q8IXS2 RNU6-634P-201ENST00000459134 106 ntBASIC-2.56□□□□□ -2.82
CCDC65Q8IXS2 U7.4-201ENST00000614961 63 ntBASIC-2.57□□□□□ -2.82
CCDC65Q8IXS2 RNU6-828P-201ENST00000364876 107 ntBASIC-2.58□□□□□ -2.82
CCDC65Q8IXS2 RNU6-520P-201ENST00000384717 104 ntBASIC-2.58□□□□□ -2.82
CCDC65Q8IXS2 RNY4P27-201ENST00000363341 96 ntBASIC-2.59□□□□□ -2.82
CCDC65Q8IXS2 MIR4756-201ENST00000577874 78 ntBASIC-2.59□□□□□ -2.82
CCDC65Q8IXS2 RNU6-820P-201ENST00000384273 107 ntBASIC-2.6□□□□□ -2.83
CCDC65Q8IXS2 MIR581-201ENST00000384895 96 ntBASIC-2.61□□□□□ -2.83
CCDC65Q8IXS2 RNU6-663P-201ENST00000391105 106 ntBASIC-2.62□□□□□ -2.83
CCDC65Q8IXS2 SNORD116.2-201ENST00000391251 93 ntBASIC-2.62□□□□□ -2.83
CCDC65Q8IXS2 MIR1207-201ENST00000408249 87 ntBASIC-2.62□□□□□ -2.83
CCDC65Q8IXS2 RNU6-1206P-201ENST00000516339 103 ntBASIC-2.63□□□□□ -2.83
CCDC65Q8IXS2 RNU6-122P-201ENST00000516818 107 ntBASIC-2.63□□□□□ -2.83
CCDC65Q8IXS2 MIR5582-201ENST00000579697 68 ntBASIC-2.63□□□□□ -2.83
CCDC65Q8IXS2 MIR548W-201ENST00000581970 74 ntBASIC-2.63□□□□□ -2.83
CCDC65Q8IXS2 AC062037.1-201ENST00000605302 128 ntBASIC-2.63□□□□□ -2.83
CCDC65Q8IXS2 SNORD18C-201ENST00000362704 69 ntBASIC-2.64□□□□□ -2.83
CCDC65Q8IXS2 SNORA25.5-201ENST00000363782 126 ntBASIC-2.64□□□□□ -2.83
CCDC65Q8IXS2 Y_RNA.369-201ENST00000365568 117 ntBASIC-2.64□□□□□ -2.83
CCDC65Q8IXS2 RNU4-88P-201ENST00000411220 86 ntBASIC-2.64□□□□□ -2.83
CCDC65Q8IXS2 SNORA40B-201ENST00000385573 128 ntBASIC-2.65□□□□□ -2.83
CCDC65Q8IXS2 MIR664B-201ENST00000626756 61 ntBASIC-2.66□□□□□ -2.84
CCDC65Q8IXS2 MIR202-201ENST00000362219 110 ntBASIC-2.67□□□□□ -2.84
CCDC65Q8IXS2 MIR548N-201ENST00000408742 75 ntBASIC-2.67□□□□□ -2.84
CCDC65Q8IXS2 snoU13.10-201ENST00000459301 103 ntBASIC-2.67□□□□□ -2.84
CCDC65Q8IXS2 SNORD60-201ENST00000383903 83 ntBASIC-2.68□□□□□ -2.84
CCDC65Q8IXS2 SNORA40.16-201ENST00000517238 121 ntBASIC-2.68□□□□□ -2.84
CCDC65Q8IXS2 SNORA25.4-201ENST00000363666 124 ntBASIC-2.69□□□□□ -2.84
CCDC65Q8IXS2 RNU6-649P-201ENST00000384463 107 ntBASIC-2.69□□□□□ -2.84
CCDC65Q8IXS2 RNU6-361P-201ENST00000364454 107 ntBASIC-2.7□□□□□ -2.84
CCDC65Q8IXS2 RNU6-980P-201ENST00000516925 103 ntBASIC-2.7□□□□□ -2.84
CCDC65Q8IXS2 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-2.7□□□□□ -2.84
CCDC65Q8IXS2 U2.22-201ENST00000636441 106 ntBASIC-2.71□□□□□ -2.84
CCDC65Q8IXS2 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.72□□□□□ -2.84
CCDC65Q8IXS2 SNORA17.4-201ENST00000391287 132 ntBASIC-2.72□□□□□ -2.84
CCDC65Q8IXS2 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.72□□□□□ -2.84
CCDC65Q8IXS2 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.73□□□□□ -2.85
CCDC65Q8IXS2 Y_RNA.545-201ENST00000384652 105 ntBASIC-2.75□□□□□ -2.85
CCDC65Q8IXS2 SNORD30.1-201ENST00000391309 70 ntBASIC-2.75□□□□□ -2.85
CCDC65Q8IXS2 Y_RNA.81-201ENST00000362997 102 ntBASIC-2.77□□□□□ -2.85
CCDC65Q8IXS2 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.77□□□□□ -2.85
CCDC65Q8IXS2 RNU7-119P-201ENST00000459279 63 ntBASIC-2.77□□□□□ -2.85
CCDC65Q8IXS2 RNU6-530P-201ENST00000391180 107 ntBASIC-2.78□□□□□ -2.85
CCDC65Q8IXS2 MIR4511-201ENST00000582784 87 ntBASIC-2.78□□□□□ -2.85
CCDC65Q8IXS2 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.79□□□□□ -2.86
Retrieved 100 of 98,524 protein–RNA pairs in 311.3 ms