Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MTRNR2L9-201ENST00000622562 75 ntBASIC0.01□□□□□ -2.41
COL4A4P53420 SNORD114-5-201ENST00000362928 70 ntBASIC0□□□□□ -2.41
COL4A4P53420 SNORD115-33-201ENST00000363723 82 ntBASIC0□□□□□ -2.41
COL4A4P53420 Y_RNA.321-201ENST00000365149 102 ntBASIC0□□□□□ -2.41
COL4A4P53420 MT-TQ-201ENST00000387372 72 ntBASIC0□□□□□ -2.41
COL4A4P53420 AC093726.3-201ENST00000637588 150 ntBASIC0□□□□□ -2.41
COL4A4P53420 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.01□□□□□ -2.41
COL4A4P53420 RNU6-742P-201ENST00000365289 107 ntBASIC-0.01□□□□□ -2.41
COL4A4P53420 MIR204-201ENST00000385200 110 ntBASIC-0.01□□□□□ -2.41
COL4A4P53420 RNU6-930P-201ENST00000390938 100 ntBASIC-0.01□□□□□ -2.41
COL4A4P53420 RNA5SP66-201ENST00000517178 101 ntBASIC-0.01□□□□□ -2.41
COL4A4P53420 RNU6-361P-201ENST00000364454 107 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 SNORD60-201ENST00000383903 83 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 MIR224-201ENST00000384889 81 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 AP000533.3-201ENST00000447704 118 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 SNORD4A-201ENST00000459174 72 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 MIR3666-201ENST00000607845 111 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 MIR548H4-201ENST00000408689 111 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 SNORD63.2-201ENST00000516303 64 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 MIR3179-1-201ENST00000578940 84 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 MIR3179-2-201ENST00000579107 84 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 MIR3179-3-201ENST00000579566 84 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 MIR3179-4-201ENST00000617599 84 ntBASIC-0.02□□□□□ -2.41
COL4A4P53420 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.03□□□□□ -2.41
COL4A4P53420 SNORD114-17-201ENST00000364699 75 ntBASIC-0.03□□□□□ -2.41
COL4A4P53420 RNU6-530P-201ENST00000391180 107 ntBASIC-0.03□□□□□ -2.41
COL4A4P53420 RNA5SP300-201ENST00000391197 107 ntBASIC-0.03□□□□□ -2.41
COL4A4P53420 RNU6-721P-201ENST00000410155 105 ntBASIC-0.03□□□□□ -2.41
COL4A4P53420 SNORA13-201ENST00000458790 133 ntBASIC-0.03□□□□□ -2.41
COL4A4P53420 MIR5683-201ENST00000636514 76 ntBASIC-0.03□□□□□ -2.41
COL4A4P53420 SNORD114-3-201ENST00000364969 75 ntBASIC-0.04□□□□□ -2.42
COL4A4P53420 AL353691.2-201ENST00000443795 59 ntBASIC-0.04□□□□□ -2.42
COL4A4P53420 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.04□□□□□ -2.42
COL4A4P53420 MIR4317-201ENST00000637586 65 ntBASIC-0.04□□□□□ -2.42
COL4A4P53420 MIR520D-201ENST00000385002 87 ntBASIC-0.05□□□□□ -2.42
COL4A4P53420 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
COL4A4P53420 AL445193.1-201ENST00000441183 141 ntBASIC-0.05□□□□□ -2.42
COL4A4P53420 RNU6-732P-201ENST00000516033 103 ntBASIC-0.05□□□□□ -2.42
COL4A4P53420 RNA5SP169-201ENST00000517268 117 ntBASIC-0.05□□□□□ -2.42
COL4A4P53420 SNORD114-11-201ENST00000363738 75 ntBASIC-0.06□□□□□ -2.42
COL4A4P53420 RNU6-176P-201ENST00000517196 105 ntBASIC-0.06□□□□□ -2.42
COL4A4P53420 MIR23C-201ENST00000579846 100 ntBASIC-0.06□□□□□ -2.42
COL4A4P53420 RNU6-608P-201ENST00000383927 104 ntBASIC-0.07□□□□□ -2.42
COL4A4P53420 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
COL4A4P53420 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.07□□□□□ -2.42
COL4A4P53420 MIR4788-201ENST00000639104 80 ntBASIC-0.07□□□□□ -2.42
COL4A4P53420 RNU6-1008P-201ENST00000384160 104 ntBASIC-0.08□□□□□ -2.42
COL4A4P53420 RNU6-258P-201ENST00000390884 101 ntBASIC-0.08□□□□□ -2.42
COL4A4P53420 SNORA17.4-201ENST00000391287 132 ntBASIC-0.08□□□□□ -2.42
COL4A4P53420 SNORD75.1-201ENST00000408373 60 ntBASIC-0.08□□□□□ -2.42
COL4A4P53420 U6.103-201ENST00000637085 61 ntBASIC-0.08□□□□□ -2.42
COL4A4P53420 RNU6-986P-201ENST00000363133 102 ntBASIC-0.08□□□□□ -2.42
COL4A4P53420 RNU6-1204P-201ENST00000363948 107 ntBASIC-0.08□□□□□ -2.42
COL4A4P53420 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.08□□□□□ -2.42
COL4A4P53420 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL4A4P53420 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.09□□□□□ -2.42
COL4A4P53420 RNU6-822P-201ENST00000362707 106 ntBASIC-0.1□□□□□ -2.43
COL4A4P53420 MIR507-201ENST00000385234 94 ntBASIC-0.1□□□□□ -2.43
COL4A4P53420 SNORA32.1-201ENST00000364514 115 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 SNORD14C-201ENST00000365382 88 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 RNU6-59P-201ENST00000384787 107 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 MIR548N-201ENST00000408742 75 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 RNY3P8-201ENST00000411366 126 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 AC090616.4-201ENST00000448026 115 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 MIR4436A-201ENST00000585278 85 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 AC013734.1-201ENST00000619329 111 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 SNORA32.3-201ENST00000384772 121 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 RNU6-300P-201ENST00000459080 104 ntBASIC-0.11□□□□□ -2.43
COL4A4P53420 MIR202-201ENST00000362219 110 ntBASIC-0.12□□□□□ -2.43
COL4A4P53420 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.12□□□□□ -2.43
COL4A4P53420 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.12□□□□□ -2.43
COL4A4P53420 AC021146.6-201ENST00000514659 117 ntBASIC-0.12□□□□□ -2.43
COL4A4P53420 AC120024.2-201ENST00000576526 175 ntBASIC-0.12□□□□□ -2.43
COL4A4P53420 MIR4426-201ENST00000640330 63 ntBASIC-0.12□□□□□ -2.43
COL4A4P53420 MIR379-201ENST00000362218 67 ntBASIC-0.13□□□□□ -2.43
COL4A4P53420 RNA5SP26-201ENST00000362406 119 ntBASIC-0.13□□□□□ -2.43
COL4A4P53420 SNORD64-201ENST00000386683 67 ntBASIC-0.13□□□□□ -2.43
COL4A4P53420 RNU6-320P-201ENST00000516511 106 ntBASIC-0.13□□□□□ -2.43
COL4A4P53420 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 MIR196A2-201ENST00000385189 110 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 RNU4-63P-201ENST00000411313 118 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 RPL35AP4-201ENST00000412007 102 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 AC018880.2-201ENST00000414265 201 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.14□□□□□ -2.43
COL4A4P53420 RNU6-79P-201ENST00000362511 107 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 RNU6-431P-201ENST00000383874 107 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 MIR581-201ENST00000384895 96 ntBASIC-0.14□□□□□ -2.43
COL4A4P53420 SNORD114-14-201ENST00000362723 75 ntBASIC-0.15□□□□□ -2.43
COL4A4P53420 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.15□□□□□ -2.43
COL4A4P53420 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.16□□□□□ -2.44
COL4A4P53420 SNORA3B-201ENST00000391305 131 ntBASIC-0.17□□□□□ -2.44
COL4A4P53420 U4.2-201ENST00000618561 85 ntBASIC-0.18□□□□□ -2.44
COL4A4P53420 Y_RNA.781-201ENST00000620301 103 ntBASIC-0.18□□□□□ -2.44
COL4A4P53420 U6.97-201ENST00000636904 101 ntBASIC-0.18□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms