Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-987P-201ENST00000384759 104 ntBASIC-0.36□□□□□ -2.47
LIG3P49916 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.36□□□□□ -2.47
LIG3P49916 RNU4-37P-201ENST00000410214 84 ntBASIC-0.36□□□□□ -2.47
LIG3P49916 RNU6-284P-201ENST00000411105 106 ntBASIC-0.36□□□□□ -2.47
LIG3P49916 RNU6-320P-201ENST00000516511 106 ntBASIC-0.36□□□□□ -2.47
LIG3P49916 RNU6-419P-201ENST00000517030 63 ntBASIC-0.36□□□□□ -2.47
LIG3P49916 Y_RNA.722-201ENST00000517279 114 ntBASIC-0.37□□□□□ -2.47
LIG3P49916 RNU6-431P-201ENST00000383874 107 ntBASIC-0.38□□□□□ -2.47
LIG3P49916 MIR604-201ENST00000384880 94 ntBASIC-0.38□□□□□ -2.47
LIG3P49916 RNA5SP25-201ENST00000410815 110 ntBASIC-0.38□□□□□ -2.47
LIG3P49916 MIR101-1-201ENST00000362265 75 ntBASIC-0.39□□□□□ -2.47
LIG3P49916 RNU4-33P-201ENST00000364316 85 ntBASIC-0.39□□□□□ -2.47
LIG3P49916 AC021146.6-201ENST00000514659 117 ntBASIC-0.39□□□□□ -2.47
LIG3P49916 SNORD114-25-201ENST00000363742 72 ntBASIC-0.4□□□□□ -2.47
LIG3P49916 RNA5SP368-201ENST00000364298 116 ntBASIC-0.4□□□□□ -2.47
LIG3P49916 SNORD64-201ENST00000386683 67 ntBASIC-0.4□□□□□ -2.47
LIG3P49916 RNU6-753P-201ENST00000363926 107 ntBASIC-0.41□□□□□ -2.48
LIG3P49916 RNA5SP26-201ENST00000362406 119 ntBASIC-0.42□□□□□ -2.48
LIG3P49916 RNA5SP275-201ENST00000363936 118 ntBASIC-0.42□□□□□ -2.48
LIG3P49916 SNORD14C-201ENST00000365382 88 ntBASIC-0.42□□□□□ -2.48
LIG3P49916 RNY3P8-201ENST00000411366 126 ntBASIC-0.42□□□□□ -2.48
LIG3P49916 AL451105.1-201ENST00000450005 189 ntBASIC-0.42□□□□□ -2.48
LIG3P49916 Y_RNA.699-201ENST00000516803 93 ntBASIC-0.42□□□□□ -2.48
LIG3P49916 MIR8064-201ENST00000612863 90 ntBASIC-0.42□□□□□ -2.48
LIG3P49916 SNORD114-14-201ENST00000362723 75 ntBASIC-0.44□□□□□ -2.48
LIG3P49916 RNU6-530P-201ENST00000391180 107 ntBASIC-0.44□□□□□ -2.48
LIG3P49916 MIR29B1-201ENST00000385015 81 ntBASIC-0.45□□□□□ -2.48
LIG3P49916 MIR147A-201ENST00000385079 72 ntBASIC-0.45□□□□□ -2.48
LIG3P49916 RNU6-141P-201ENST00000410499 105 ntBASIC-0.45□□□□□ -2.48
LIG3P49916 Y_RNA.603-201ENST00000410571 108 ntBASIC-0.45□□□□□ -2.48
LIG3P49916 RNU4-88P-201ENST00000411220 86 ntBASIC-0.45□□□□□ -2.48
LIG3P49916 AC090616.4-201ENST00000448026 115 ntBASIC-0.45□□□□□ -2.48
LIG3P49916 Y_RNA.379-201ENST00000365653 102 ntBASIC-0.46□□□□□ -2.48
LIG3P49916 RNA5SP451-201ENST00000410588 110 ntBASIC-0.46□□□□□ -2.48
LIG3P49916 snoU13.19-201ENST00000459148 104 ntBASIC-0.46□□□□□ -2.48
LIG3P49916 SNORD114-15-201ENST00000364687 72 ntBASIC-0.47□□□□□ -2.48
LIG3P49916 MIR1468-201ENST00000410600 86 ntBASIC-0.47□□□□□ -2.48
LIG3P49916 RNU7-134P-201ENST00000458997 64 ntBASIC-0.47□□□□□ -2.48
LIG3P49916 SNORA27.2-201ENST00000363365 126 ntBASIC-0.48□□□□□ -2.49
LIG3P49916 RNU6-742P-201ENST00000365289 107 ntBASIC-0.48□□□□□ -2.49
LIG3P49916 RNU6-808P-201ENST00000391233 108 ntBASIC-0.48□□□□□ -2.49
LIG3P49916 AL500527.2-201ENST00000454105 95 ntBASIC-0.48□□□□□ -2.49
LIG3P49916 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.48□□□□□ -2.49
LIG3P49916 SNORA32.3-201ENST00000384772 121 ntBASIC-0.49□□□□□ -2.49
LIG3P49916 MIR382-201ENST00000637119 76 ntBASIC-0.49□□□□□ -2.49
LIG3P49916 RNU6-563P-201ENST00000364872 108 ntBASIC-0.5□□□□□ -2.49
LIG3P49916 MIR202-201ENST00000362219 110 ntBASIC-0.51□□□□□ -2.49
LIG3P49916 SNORD95.1-201ENST00000364099 68 ntBASIC-0.51□□□□□ -2.49
LIG3P49916 RPS29P8-201ENST00000445109 171 ntBASIC-0.51□□□□□ -2.49
LIG3P49916 Y_RNA.321-201ENST00000365149 102 ntBASIC-0.52□□□□□ -2.49
LIG3P49916 MIR548AZ-201ENST00000616567 95 ntBASIC-0.52□□□□□ -2.49
LIG3P49916 AC013734.1-201ENST00000619329 111 ntBASIC-0.52□□□□□ -2.49
LIG3P49916 RNU6-30P-201ENST00000384561 107 ntBASIC-0.54□□□□□ -2.5
LIG3P49916 MIR224-201ENST00000384889 81 ntBASIC-0.54□□□□□ -2.5
LIG3P49916 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.55□□□□□ -2.5
LIG3P49916 MIR6818-201ENST00000621576 65 ntBASIC-0.55□□□□□ -2.5
LIG3P49916 RNU6-1008P-201ENST00000384160 104 ntBASIC-0.57□□□□□ -2.5
LIG3P49916 RNU6-930P-201ENST00000390938 100 ntBASIC-0.57□□□□□ -2.5
LIG3P49916 AC120024.2-201ENST00000576526 175 ntBASIC-0.57□□□□□ -2.5
LIG3P49916 RNU6-986P-201ENST00000363133 102 ntBASIC-0.58□□□□□ -2.5
LIG3P49916 MIR548F3-201ENST00000408509 87 ntBASIC-0.58□□□□□ -2.5
LIG3P49916 snoU83B.1-201ENST00000517136 88 ntBASIC-0.58□□□□□ -2.5
LIG3P49916 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-0.58□□□□□ -2.5
LIG3P49916 U6.97-201ENST00000636904 101 ntBASIC-0.58□□□□□ -2.5
LIG3P49916 MIR4426-201ENST00000640330 63 ntBASIC-0.58□□□□□ -2.5
LIG3P49916 SNORD45.2-201ENST00000363552 72 ntBASIC-0.59□□□□□ -2.5
LIG3P49916 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-0.59□□□□□ -2.5
LIG3P49916 RNU6-838P-201ENST00000363399 108 ntBASIC-0.6□□□□□ -2.51
LIG3P49916 MIR548AL-201ENST00000578416 97 ntBASIC-0.6□□□□□ -2.51
LIG3P49916 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.61□□□□□ -2.51
LIG3P49916 MIR581-201ENST00000384895 96 ntBASIC-0.61□□□□□ -2.51
LIG3P49916 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.61□□□□□ -2.51
LIG3P49916 MIR6874-201ENST00000635894 71 ntBASIC-0.62□□□□□ -2.51
LIG3P49916 MIR545-201ENST00000385085 106 ntBASIC-0.63□□□□□ -2.51
LIG3P49916 MIR196A1-201ENST00000388006 70 ntBASIC-0.63□□□□□ -2.51
LIG3P49916 DLEU2_4.2-201ENST00000616613 58 ntBASIC-0.63□□□□□ -2.51
LIG3P49916 RNU6-361P-201ENST00000364454 107 ntBASIC-0.64□□□□□ -2.51
LIG3P49916 SNORA17.4-201ENST00000391287 132 ntBASIC-0.64□□□□□ -2.51
LIG3P49916 RNU6-164P-201ENST00000364604 103 ntBASIC-0.66□□□□□ -2.52
LIG3P49916 MIR548H4-201ENST00000408689 111 ntBASIC-0.66□□□□□ -2.52
LIG3P49916 AC091912.2-201ENST00000624798 167 ntBASIC-0.66□□□□□ -2.52
LIG3P49916 AC018880.2-201ENST00000414265 201 ntBASIC-0.67□□□□□ -2.52
LIG3P49916 RNA5SP67-201ENST00000516422 131 ntBASIC-0.67□□□□□ -2.52
LIG3P49916 MIR4499-201ENST00000584834 69 ntBASIC-0.67□□□□□ -2.52
LIG3P49916 uc_338.19-201ENST00000616808 99 ntBASIC-0.67□□□□□ -2.52
LIG3P49916 MIR8485-201ENST00000401372 91 ntBASIC-0.68□□□□□ -2.52
LIG3P49916 RNU6-300P-201ENST00000459080 104 ntBASIC-0.68□□□□□ -2.52
LIG3P49916 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.69□□□□□ -2.52
LIG3P49916 MT-TQ-201ENST00000387372 72 ntBASIC-0.69□□□□□ -2.52
LIG3P49916 RNU4-63P-201ENST00000411313 118 ntBASIC-0.69□□□□□ -2.52
LIG3P49916 MIR548N-201ENST00000408742 75 ntBASIC-0.71□□□□□ -2.52
LIG3P49916 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.71□□□□□ -2.52
LIG3P49916 MIR548AX-201ENST00000580117 73 ntBASIC-0.71□□□□□ -2.52
LIG3P49916 AL627230.5-201ENST00000619807 58 ntBASIC-0.71□□□□□ -2.52
LIG3P49916 RNU6-79P-201ENST00000362511 107 ntBASIC-0.72□□□□□ -2.52
LIG3P49916 RNU6-1047P-201ENST00000364418 107 ntBASIC-0.72□□□□□ -2.52
LIG3P49916 SNORD60-201ENST00000383903 83 ntBASIC-0.72□□□□□ -2.52
LIG3P49916 MIR23C-201ENST00000579846 100 ntBASIC-0.72□□□□□ -2.52
LIG3P49916 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-0.72□□□□□ -2.52
LIG3P49916 RNU6-1204P-201ENST00000363948 107 ntBASIC-0.74□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 224.7 ms