Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 SNORD18.1-201ENST00000363807 70 ntBASIC-1.07□□□□□ -2.58
LHX1P48742 MIR581-201ENST00000384895 96 ntBASIC-1.07□□□□□ -2.58
LHX1P48742 MIR450A2-201ENST00000385022 100 ntBASIC-1.07□□□□□ -2.58
LHX1P48742 MIR1468-201ENST00000410600 86 ntBASIC-1.07□□□□□ -2.58
LHX1P48742 AC108019.1-201ENST00000512540 175 ntBASIC-1.07□□□□□ -2.58
LHX1P48742 Y_RNA.694-201ENST00000516677 117 ntBASIC-1.07□□□□□ -2.58
LHX1P48742 MIR548AM-201ENST00000584298 74 ntBASIC-1.07□□□□□ -2.58
LHX1P48742 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.08□□□□□ -2.58
LHX1P48742 RNU6-242P-201ENST00000384359 107 ntBASIC-1.08□□□□□ -2.58
LHX1P48742 RNU7-160P-201ENST00000516660 62 ntBASIC-1.08□□□□□ -2.58
LHX1P48742 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.08□□□□□ -2.58
LHX1P48742 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.09□□□□□ -2.58
LHX1P48742 RNU6-294P-201ENST00000364999 102 ntBASIC-1.09□□□□□ -2.58
LHX1P48742 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.09□□□□□ -2.58
LHX1P48742 Y_RNA.443-201ENST00000384135 111 ntBASIC-1.09□□□□□ -2.58
LHX1P48742 RNU6-231P-201ENST00000517122 103 ntBASIC-1.09□□□□□ -2.58
LHX1P48742 MIR4756-201ENST00000577874 78 ntBASIC-1.09□□□□□ -2.58
LHX1P48742 AC062037.1-201ENST00000605302 128 ntBASIC-1.09□□□□□ -2.58
LHX1P48742 RNU6-810P-201ENST00000364001 107 ntBASIC-1.1□□□□□ -2.59
LHX1P48742 RNU6-411P-201ENST00000384451 107 ntBASIC-1.1□□□□□ -2.59
LHX1P48742 RNU6-634P-201ENST00000459134 106 ntBASIC-1.1□□□□□ -2.59
LHX1P48742 MIR548W-201ENST00000581970 74 ntBASIC-1.1□□□□□ -2.59
LHX1P48742 MIR7110-201ENST00000612638 86 ntBASIC-1.1□□□□□ -2.59
LHX1P48742 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.1□□□□□ -2.59
LHX1P48742 U6.97-201ENST00000636904 101 ntBASIC-1.1□□□□□ -2.59
LHX1P48742 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.11□□□□□ -2.59
LHX1P48742 MIR5582-201ENST00000579697 68 ntBASIC-1.11□□□□□ -2.59
LHX1P48742 Y_RNA.369-201ENST00000365568 117 ntBASIC-1.12□□□□□ -2.59
LHX1P48742 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.12□□□□□ -2.59
LHX1P48742 RNU6-983P-201ENST00000516004 103 ntBASIC-1.12□□□□□ -2.59
LHX1P48742 RNU6-122P-201ENST00000516818 107 ntBASIC-1.12□□□□□ -2.59
LHX1P48742 SNORA40.16-201ENST00000517238 121 ntBASIC-1.12□□□□□ -2.59
LHX1P48742 Y_RNA.321-201ENST00000365149 102 ntBASIC-1.13□□□□□ -2.59
LHX1P48742 RNU6-820P-201ENST00000384273 107 ntBASIC-1.13□□□□□ -2.59
LHX1P48742 RNU6-520P-201ENST00000384717 104 ntBASIC-1.13□□□□□ -2.59
LHX1P48742 RNU4-88P-201ENST00000411220 86 ntBASIC-1.13□□□□□ -2.59
LHX1P48742 snoU13.19-201ENST00000459148 104 ntBASIC-1.13□□□□□ -2.59
LHX1P48742 U7.4-201ENST00000614961 63 ntBASIC-1.13□□□□□ -2.59
LHX1P48742 MIR1246-201ENST00000636535 73 ntBASIC-1.13□□□□□ -2.59
LHX1P48742 MIR4320-201ENST00000636981 65 ntBASIC-1.13□□□□□ -2.59
LHX1P48742 SNORA25.5-201ENST00000363782 126 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 RNU6-828P-201ENST00000364876 107 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 SNORA40B-201ENST00000385573 128 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 RNU6-663P-201ENST00000391105 106 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 MIR548N-201ENST00000408742 75 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 snoU13.10-201ENST00000459301 103 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 RNA5SP180-201ENST00000516181 101 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 MIR664B-201ENST00000626756 61 ntBASIC-1.14□□□□□ -2.59
LHX1P48742 MIR202-201ENST00000362219 110 ntBASIC-1.15□□□□□ -2.59
LHX1P48742 RNU6-30P-201ENST00000384561 107 ntBASIC-1.15□□□□□ -2.59
LHX1P48742 SNORD116.2-201ENST00000391251 93 ntBASIC-1.15□□□□□ -2.59
LHX1P48742 HAR1A.1-201ENST00000459583 118 ntBASIC-1.15□□□□□ -2.59
LHX1P48742 RNA5SP67-201ENST00000516422 131 ntBASIC-1.15□□□□□ -2.59
LHX1P48742 SNORD18C-201ENST00000362704 69 ntBASIC-1.16□□□□□ -2.6
LHX1P48742 RNU6-361P-201ENST00000364454 107 ntBASIC-1.16□□□□□ -2.6
LHX1P48742 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.16□□□□□ -2.6
LHX1P48742 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.16□□□□□ -2.6
LHX1P48742 Y_RNA.81-201ENST00000362997 102 ntBASIC-1.17□□□□□ -2.6
LHX1P48742 SNORA25.4-201ENST00000363666 124 ntBASIC-1.17□□□□□ -2.6
LHX1P48742 RNU6-68P-201ENST00000516576 104 ntBASIC-1.17□□□□□ -2.6
LHX1P48742 RNU6-649P-201ENST00000384463 107 ntBASIC-1.18□□□□□ -2.6
LHX1P48742 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.18□□□□□ -2.6
LHX1P48742 RNU6-980P-201ENST00000516925 103 ntBASIC-1.18□□□□□ -2.6
LHX1P48742 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.19□□□□□ -2.6
LHX1P48742 SNORA17.4-201ENST00000391287 132 ntBASIC-1.19□□□□□ -2.6
LHX1P48742 MIR4511-201ENST00000582784 87 ntBASIC-1.19□□□□□ -2.6
LHX1P48742 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-1.19□□□□□ -2.6
LHX1P48742 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.2□□□□□ -2.6
LHX1P48742 SNORD60-201ENST00000383903 83 ntBASIC-1.2□□□□□ -2.6
LHX1P48742 RNU6-573P-201ENST00000383938 106 ntBASIC-1.2□□□□□ -2.6
LHX1P48742 Y_RNA.545-201ENST00000384652 105 ntBASIC-1.2□□□□□ -2.6
LHX1P48742 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.2□□□□□ -2.6
LHX1P48742 SNORD73B-201ENST00000364394 72 ntBASIC-1.21□□□□□ -2.6
LHX1P48742 RNU6-530P-201ENST00000391180 107 ntBASIC-1.21□□□□□ -2.6
LHX1P48742 RNU6-279P-201ENST00000391297 101 ntBASIC-1.21□□□□□ -2.6
LHX1P48742 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.21□□□□□ -2.6
LHX1P48742 AL451105.1-201ENST00000450005 189 ntBASIC-1.21□□□□□ -2.6
LHX1P48742 RNU6-857P-201ENST00000515893 110 ntBASIC-1.21□□□□□ -2.6
LHX1P48742 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.21□□□□□ -2.6
LHX1P48742 U6.111-201ENST00000636093 83 ntBASIC-1.21□□□□□ -2.6
LHX1P48742 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.22□□□□□ -2.6
LHX1P48742 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.22□□□□□ -2.6
LHX1P48742 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.22□□□□□ -2.6
LHX1P48742 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.22□□□□□ -2.6
LHX1P48742 RNU6-1124P-201ENST00000384169 107 ntBASIC-1.22□□□□□ -2.6
LHX1P48742 SNORD30.1-201ENST00000391309 70 ntBASIC-1.22□□□□□ -2.6
LHX1P48742 MIR1255A-201ENST00000408338 113 ntBASIC-1.22□□□□□ -2.6
LHX1P48742 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.22□□□□□ -2.6
LHX1P48742 MIR3202-2-201ENST00000635980 79 ntBASIC-1.22□□□□□ -2.6
LHX1P48742 AC103706.3-201ENST00000636297 85 ntBASIC-1.23□□□□□ -2.61
LHX1P48742 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.24□□□□□ -2.61
LHX1P48742 RNY4P29-201ENST00000410801 97 ntBASIC-1.24□□□□□ -2.61
LHX1P48742 RNU7-119P-201ENST00000459279 63 ntBASIC-1.24□□□□□ -2.61
LHX1P48742 RNU6-539P-201ENST00000516665 103 ntBASIC-1.24□□□□□ -2.61
LHX1P48742 RNU6-419P-201ENST00000517030 63 ntBASIC-1.24□□□□□ -2.61
LHX1P48742 MIR3938-201ENST00000582157 103 ntBASIC-1.24□□□□□ -2.61
LHX1P48742 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.24□□□□□ -2.61
LHX1P48742 RNA5SP405-201ENST00000363059 114 ntBASIC-1.25□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 191.3 ms