Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 U4.4-201ENST00000620626 117 ntBASIC-1.08□□□□□ -2.58
LIME1Q9H400 MIR664A-201ENST00000626086 82 ntBASIC-1.08□□□□□ -2.58
LIME1Q9H400 RNA5SP215-201ENST00000363440 122 ntBASIC-1.1□□□□□ -2.59
LIME1Q9H400 SNORD45A-201ENST00000384512 84 ntBASIC-1.1□□□□□ -2.59
LIME1Q9H400 MIR29B1-201ENST00000385015 81 ntBASIC-1.1□□□□□ -2.59
LIME1Q9H400 AL353691.2-201ENST00000443795 59 ntBASIC-1.1□□□□□ -2.59
LIME1Q9H400 U7.5-201ENST00000517224 61 ntBASIC-1.1□□□□□ -2.59
LIME1Q9H400 RNA5SP192-201ENST00000364404 120 ntBASIC-1.11□□□□□ -2.59
LIME1Q9H400 Y_RNA.282-201ENST00000364793 102 ntBASIC-1.11□□□□□ -2.59
LIME1Q9H400 Y_RNA.325-201ENST00000365171 122 ntBASIC-1.11□□□□□ -2.59
LIME1Q9H400 RNU6-458P-201ENST00000384179 107 ntBASIC-1.11□□□□□ -2.59
LIME1Q9H400 RNU6-24P-201ENST00000384440 107 ntBASIC-1.11□□□□□ -2.59
LIME1Q9H400 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.11□□□□□ -2.59
LIME1Q9H400 snoU83B.1-201ENST00000517136 88 ntBASIC-1.11□□□□□ -2.59
LIME1Q9H400 U6.58-201ENST00000613107 107 ntBASIC-1.11□□□□□ -2.59
LIME1Q9H400 MIR365A-201ENST00000362260 87 ntBASIC-1.12□□□□□ -2.59
LIME1Q9H400 RNU6-820P-201ENST00000384273 107 ntBASIC-1.12□□□□□ -2.59
LIME1Q9H400 MIR3165-201ENST00000579874 75 ntBASIC-1.12□□□□□ -2.59
LIME1Q9H400 MIR548V-201ENST00000584165 80 ntBASIC-1.12□□□□□ -2.59
LIME1Q9H400 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.12□□□□□ -2.59
LIME1Q9H400 RNU6-668P-201ENST00000364180 107 ntBASIC-1.13□□□□□ -2.59
LIME1Q9H400 RNU6-1241P-201ENST00000384536 107 ntBASIC-1.13□□□□□ -2.59
LIME1Q9H400 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.13□□□□□ -2.59
LIME1Q9H400 RNU6-787P-201ENST00000384032 107 ntBASIC-1.14□□□□□ -2.59
LIME1Q9H400 RNU7-88P-201ENST00000458752 63 ntBASIC-1.14□□□□□ -2.59
LIME1Q9H400 MIR429-201ENST00000362106 83 ntBASIC-1.15□□□□□ -2.59
LIME1Q9H400 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.15□□□□□ -2.59
LIME1Q9H400 SNORD19-201ENST00000391191 68 ntBASIC-1.15□□□□□ -2.59
LIME1Q9H400 MIR4306-201ENST00000583390 91 ntBASIC-1.15□□□□□ -2.59
LIME1Q9H400 Y_RNA.788-201ENST00000622394 112 ntBASIC-1.15□□□□□ -2.59
LIME1Q9H400 Y_RNA.236-201ENST00000364427 111 ntBASIC-1.16□□□□□ -2.6
LIME1Q9H400 RNU6-696P-201ENST00000390834 107 ntBASIC-1.16□□□□□ -2.6
LIME1Q9H400 AC062037.1-201ENST00000605302 128 ntBASIC-1.16□□□□□ -2.6
LIME1Q9H400 RNU6-1298P-201ENST00000362456 101 ntBASIC-1.17□□□□□ -2.6
LIME1Q9H400 MIR527-201ENST00000385244 85 ntBASIC-1.17□□□□□ -2.6
LIME1Q9H400 RNU6-70P-201ENST00000516438 60 ntBASIC-1.17□□□□□ -2.6
LIME1Q9H400 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC-1.18□□□□□ -2.6
LIME1Q9H400 MIR4441-201ENST00000582623 100 ntBASIC-1.18□□□□□ -2.6
LIME1Q9H400 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 Y_RNA.109-201ENST00000363215 102 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 RNA5SP173-201ENST00000364857 136 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 MIR154-201ENST00000385243 84 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 SNORD113-2-201ENST00000391082 72 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 RNA5SP180-201ENST00000516181 101 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 AP002795.1-201ENST00000534879 84 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 MIR6818-201ENST00000621576 65 ntBASIC-1.19□□□□□ -2.6
LIME1Q9H400 SNORD116-16-201ENST00000384533 92 ntBASIC-1.2□□□□□ -2.6
LIME1Q9H400 SNORD116-24-201ENST00000384549 92 ntBASIC-1.2□□□□□ -2.6
LIME1Q9H400 MIR630-201ENST00000384957 97 ntBASIC-1.2□□□□□ -2.6
LIME1Q9H400 MIR3134-201ENST00000579433 74 ntBASIC-1.2□□□□□ -2.6
LIME1Q9H400 MIR5683-201ENST00000636514 76 ntBASIC-1.2□□□□□ -2.6
LIME1Q9H400 RNA5SP170-201ENST00000517150 101 ntBASIC-1.21□□□□□ -2.6
LIME1Q9H400 MIR3115-201ENST00000577915 68 ntBASIC-1.21□□□□□ -2.6
LIME1Q9H400 RNA5SP26-201ENST00000362406 119 ntBASIC-1.22□□□□□ -2.6
LIME1Q9H400 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.22□□□□□ -2.6
LIME1Q9H400 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.22□□□□□ -2.6
LIME1Q9H400 MIR1285-2-201ENST00000408311 88 ntBASIC-1.22□□□□□ -2.6
LIME1Q9H400 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.22□□□□□ -2.6
LIME1Q9H400 RNU6-687P-201ENST00000516443 89 ntBASIC-1.22□□□□□ -2.6
LIME1Q9H400 SNORD115-31-201ENST00000365318 82 ntBASIC-1.23□□□□□ -2.61
LIME1Q9H400 MIR4490-201ENST00000582647 84 ntBASIC-1.23□□□□□ -2.61
LIME1Q9H400 RNU6-598P-201ENST00000364017 105 ntBASIC-1.24□□□□□ -2.61
LIME1Q9H400 RNU6-895P-201ENST00000384125 103 ntBASIC-1.24□□□□□ -2.61
LIME1Q9H400 AC138207.3-201ENST00000585289 166 ntBASIC-1.26□□□□□ -2.61
LIME1Q9H400 MIR3202-2-201ENST00000635980 79 ntBASIC-1.26□□□□□ -2.61
LIME1Q9H400 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.27□□□□□ -2.61
LIME1Q9H400 RNU6-411P-201ENST00000384451 107 ntBASIC-1.27□□□□□ -2.61
LIME1Q9H400 MIR507-201ENST00000385234 94 ntBASIC-1.27□□□□□ -2.61
LIME1Q9H400 SNORA41B-201ENST00000384785 128 ntBASIC-1.28□□□□□ -2.61
LIME1Q9H400 RNA5SP461-201ENST00000516451 104 ntBASIC-1.28□□□□□ -2.61
LIME1Q9H400 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.28□□□□□ -2.61
LIME1Q9H400 SNORD73B-201ENST00000364394 72 ntBASIC-1.29□□□□□ -2.62
LIME1Q9H400 RNU7-134P-201ENST00000458997 64 ntBASIC-1.29□□□□□ -2.62
LIME1Q9H400 MIR548Q-201ENST00000408404 100 ntBASIC-1.3□□□□□ -2.62
LIME1Q9H400 RNU6-1015P-201ENST00000517121 99 ntBASIC-1.3□□□□□ -2.62
LIME1Q9H400 U7.4-201ENST00000614961 63 ntBASIC-1.3□□□□□ -2.62
LIME1Q9H400 U2.18-201ENST00000622185 84 ntBASIC-1.3□□□□□ -2.62
LIME1Q9H400 RNY4P27-201ENST00000363341 96 ntBASIC-1.31□□□□□ -2.62
LIME1Q9H400 SNORD1B-201ENST00000363091 84 ntBASIC-1.32□□□□□ -2.62
LIME1Q9H400 RNU6-576P-201ENST00000390854 102 ntBASIC-1.32□□□□□ -2.62
LIME1Q9H400 MIR8485-201ENST00000401372 91 ntBASIC-1.32□□□□□ -2.62
LIME1Q9H400 RNU6-542P-201ENST00000516405 103 ntBASIC-1.32□□□□□ -2.62
LIME1Q9H400 RNY4P29-201ENST00000410801 97 ntBASIC-1.33□□□□□ -2.62
LIME1Q9H400 RNU6-634P-201ENST00000459134 106 ntBASIC-1.33□□□□□ -2.62
LIME1Q9H400 RNU6-706P-201ENST00000517229 104 ntBASIC-1.33□□□□□ -2.62
LIME1Q9H400 RNU6-1255P-201ENST00000363434 112 ntBASIC-1.34□□□□□ -2.62
LIME1Q9H400 RNU6-164P-201ENST00000364604 103 ntBASIC-1.34□□□□□ -2.62
LIME1Q9H400 RNU6-630P-201ENST00000391258 106 ntBASIC-1.34□□□□□ -2.62
LIME1Q9H400 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.34□□□□□ -2.62
LIME1Q9H400 Y_RNA.43-201ENST00000362670 111 ntBASIC-1.35□□□□□ -2.63
LIME1Q9H400 MIR548AA1-201ENST00000384971 97 ntBASIC-1.35□□□□□ -2.63
LIME1Q9H400 MIR520D-201ENST00000385002 87 ntBASIC-1.35□□□□□ -2.63
LIME1Q9H400 RNU6-228P-201ENST00000362700 106 ntBASIC-1.36□□□□□ -2.63
LIME1Q9H400 SNORA26.2-201ENST00000390922 122 ntBASIC-1.36□□□□□ -2.63
LIME1Q9H400 RNU6-279P-201ENST00000391297 101 ntBASIC-1.36□□□□□ -2.63
LIME1Q9H400 RNU6-608P-201ENST00000383927 104 ntBASIC-1.37□□□□□ -2.63
LIME1Q9H400 AC090616.4-201ENST00000448026 115 ntBASIC-1.37□□□□□ -2.63
LIME1Q9H400 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC-1.37□□□□□ -2.63
LIME1Q9H400 Y_RNA.388-201ENST00000383919 113 ntBASIC-1.38□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 193.4 ms