Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MIR1295B-201ENST00000636144 60 ntBASIC0.04□□□□□ -2.4
USHBP1Q8N6Y0 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.04□□□□□ -2.4
USHBP1Q8N6Y0 SNORD114-31-201ENST00000363219 75 ntBASIC0.03□□□□□ -2.4
USHBP1Q8N6Y0 RNA5SP368-201ENST00000364298 116 ntBASIC0.03□□□□□ -2.4
USHBP1Q8N6Y0 Y_RNA.613-201ENST00000410726 97 ntBASIC0.03□□□□□ -2.4
USHBP1Q8N6Y0 AC114755.3-201ENST00000481111 251 ntBASIC0.03□□□□□ -2.4
USHBP1Q8N6Y0 RNU6-1312P-201ENST00000362425 108 ntBASIC0.02□□□□□ -2.41
USHBP1Q8N6Y0 MIR124-2-201ENST00000385081 109 ntBASIC0.02□□□□□ -2.41
USHBP1Q8N6Y0 AL445193.1-201ENST00000441183 141 ntBASIC0.02□□□□□ -2.41
USHBP1Q8N6Y0 RNU7-88P-201ENST00000458752 63 ntBASIC0.01□□□□□ -2.41
USHBP1Q8N6Y0 snoU13.19-201ENST00000459148 104 ntBASIC0.01□□□□□ -2.41
USHBP1Q8N6Y0 SNORA40.16-201ENST00000517238 121 ntBASIC0.01□□□□□ -2.41
USHBP1Q8N6Y0 SNORA18.1-201ENST00000363418 128 ntBASIC0□□□□□ -2.41
USHBP1Q8N6Y0 RNU6-810P-201ENST00000364001 107 ntBASIC0□□□□□ -2.41
USHBP1Q8N6Y0 SNORD114-12-201ENST00000365400 75 ntBASIC0□□□□□ -2.41
USHBP1Q8N6Y0 MIR548AA1-201ENST00000384971 97 ntBASIC0□□□□□ -2.41
USHBP1Q8N6Y0 MIR4263-201ENST00000584745 83 ntBASIC0□□□□□ -2.41
USHBP1Q8N6Y0 SPRY4-IT1_2.1-201ENST00000612613 121 ntBASIC0□□□□□ -2.41
USHBP1Q8N6Y0 U2.18-201ENST00000622185 84 ntBASIC0□□□□□ -2.41
USHBP1Q8N6Y0 SNORA40B-201ENST00000385573 128 ntBASIC-0.01□□□□□ -2.41
USHBP1Q8N6Y0 RNU6-1174P-201ENST00000517278 101 ntBASIC-0.01□□□□□ -2.41
USHBP1Q8N6Y0 RNA5SP66-201ENST00000517178 101 ntBASIC-0.02□□□□□ -2.41
USHBP1Q8N6Y0 IGLVI-20-201ENST00000519296 130 ntBASIC-0.02□□□□□ -2.41
USHBP1Q8N6Y0 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
USHBP1Q8N6Y0 RNU7-151P-201ENST00000516930 53 ntBASIC-0.03□□□□□ -2.41
USHBP1Q8N6Y0 SNORD74.6-201ENST00000364796 70 ntBASIC-0.04□□□□□ -2.42
USHBP1Q8N6Y0 SNORD63.1-201ENST00000516178 80 ntBASIC-0.04□□□□□ -2.42
USHBP1Q8N6Y0 MIR6851-201ENST00000617060 67 ntBASIC-0.04□□□□□ -2.42
USHBP1Q8N6Y0 SNORA32.1-201ENST00000364514 115 ntBASIC-0.05□□□□□ -2.42
USHBP1Q8N6Y0 RNU6-995P-201ENST00000391244 107 ntBASIC-0.05□□□□□ -2.42
USHBP1Q8N6Y0 RNU6-758P-201ENST00000516292 89 ntBASIC-0.05□□□□□ -2.42
USHBP1Q8N6Y0 RNU7-160P-201ENST00000516660 62 ntBASIC-0.05□□□□□ -2.42
USHBP1Q8N6Y0 AL590491.3-201ENST00000610731 82 ntBASIC-0.05□□□□□ -2.42
USHBP1Q8N6Y0 MIR579-201ENST00000385221 98 ntBASIC-0.06□□□□□ -2.42
USHBP1Q8N6Y0 RNU6-141P-201ENST00000410499 105 ntBASIC-0.06□□□□□ -2.42
USHBP1Q8N6Y0 SNORD57-201ENST00000448188 72 ntBASIC-0.06□□□□□ -2.42
USHBP1Q8N6Y0 SNORD38.3-201ENST00000516599 73 ntBASIC-0.06□□□□□ -2.42
USHBP1Q8N6Y0 Y_RNA.722-201ENST00000517279 114 ntBASIC-0.06□□□□□ -2.42
USHBP1Q8N6Y0 MIR7978-201ENST00000636158 59 ntBASIC-0.06□□□□□ -2.42
USHBP1Q8N6Y0 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
USHBP1Q8N6Y0 Z95118.1-201ENST00000421372 247 ntBASIC-0.07□□□□□ -2.42
USHBP1Q8N6Y0 MIR4490-201ENST00000582647 84 ntBASIC-0.07□□□□□ -2.42
USHBP1Q8N6Y0 AP001180.6-201ENST00000584918 159 ntBASIC-0.07□□□□□ -2.42
USHBP1Q8N6Y0 MIR3666-201ENST00000607845 111 ntBASIC-0.07□□□□□ -2.42
USHBP1Q8N6Y0 RNU6-808P-201ENST00000391233 108 ntBASIC-0.08□□□□□ -2.42
USHBP1Q8N6Y0 AC093726.3-201ENST00000637588 150 ntBASIC-0.08□□□□□ -2.42
USHBP1Q8N6Y0 MIR518B-201ENST00000385127 83 ntBASIC-0.09□□□□□ -2.42
USHBP1Q8N6Y0 RNU6-1238P-201ENST00000517215 102 ntBASIC-0.09□□□□□ -2.42
USHBP1Q8N6Y0 RNU6-936P-201ENST00000384005 107 ntBASIC-0.1□□□□□ -2.43
USHBP1Q8N6Y0 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-0.1□□□□□ -2.43
USHBP1Q8N6Y0 SNORD4A-201ENST00000459174 72 ntBASIC-0.1□□□□□ -2.43
USHBP1Q8N6Y0 RNA5SP67-201ENST00000516422 131 ntBASIC-0.1□□□□□ -2.43
USHBP1Q8N6Y0 MIR604-201ENST00000384880 94 ntBASIC-0.11□□□□□ -2.43
USHBP1Q8N6Y0 MIR214-201ENST00000385214 110 ntBASIC-0.11□□□□□ -2.43
USHBP1Q8N6Y0 RNU6-1267P-201ENST00000410747 107 ntBASIC-0.11□□□□□ -2.43
USHBP1Q8N6Y0 SNORD18.2-201ENST00000459604 70 ntBASIC-0.11□□□□□ -2.43
USHBP1Q8N6Y0 RNU6-732P-201ENST00000516033 103 ntBASIC-0.11□□□□□ -2.43
USHBP1Q8N6Y0 MIR8064-201ENST00000612863 90 ntBASIC-0.11□□□□□ -2.43
USHBP1Q8N6Y0 MIR548X-201ENST00000580069 75 ntBASIC-0.13□□□□□ -2.43
USHBP1Q8N6Y0 MIR4493-201ENST00000584016 73 ntBASIC-0.13□□□□□ -2.43
USHBP1Q8N6Y0 RNU6-1233P-201ENST00000362922 102 ntBASIC-0.14□□□□□ -2.43
USHBP1Q8N6Y0 MIR204-201ENST00000385200 110 ntBASIC-0.14□□□□□ -2.43
USHBP1Q8N6Y0 Y_RNA.69-201ENST00000362885 109 ntBASIC-0.15□□□□□ -2.43
USHBP1Q8N6Y0 RNA5SP25-201ENST00000410815 110 ntBASIC-0.15□□□□□ -2.43
USHBP1Q8N6Y0 RNU6-1206P-201ENST00000516339 103 ntBASIC-0.15□□□□□ -2.43
USHBP1Q8N6Y0 MIR4645-201ENST00000583158 77 ntBASIC-0.15□□□□□ -2.43
USHBP1Q8N6Y0 MIR4788-201ENST00000639104 80 ntBASIC-0.15□□□□□ -2.43
USHBP1Q8N6Y0 SNORD114-15-201ENST00000364687 72 ntBASIC-0.16□□□□□ -2.44
USHBP1Q8N6Y0 MIR125B1-201ENST00000385236 88 ntBASIC-0.16□□□□□ -2.44
USHBP1Q8N6Y0 RNA5SP300-201ENST00000391197 107 ntBASIC-0.16□□□□□ -2.44
USHBP1Q8N6Y0 SNORA13-201ENST00000458790 133 ntBASIC-0.16□□□□□ -2.44
USHBP1Q8N6Y0 SNORD22.1-201ENST00000516331 125 ntBASIC-0.16□□□□□ -2.44
USHBP1Q8N6Y0 AL627230.5-201ENST00000619807 58 ntBASIC-0.16□□□□□ -2.44
USHBP1Q8N6Y0 SNORD114-28-201ENST00000363610 72 ntBASIC-0.17□□□□□ -2.44
USHBP1Q8N6Y0 MIR548Q-201ENST00000408404 100 ntBASIC-0.17□□□□□ -2.44
USHBP1Q8N6Y0 RNU6-419P-201ENST00000517030 63 ntBASIC-0.17□□□□□ -2.44
USHBP1Q8N6Y0 MIR3681-201ENST00000580089 72 ntBASIC-0.17□□□□□ -2.44
USHBP1Q8N6Y0 RNU6-828P-201ENST00000364876 107 ntBASIC-0.18□□□□□ -2.44
USHBP1Q8N6Y0 MIR101-1-201ENST00000362265 75 ntBASIC-0.19□□□□□ -2.44
USHBP1Q8N6Y0 RNU4-33P-201ENST00000364316 85 ntBASIC-0.19□□□□□ -2.44
USHBP1Q8N6Y0 SNORD19-201ENST00000391191 68 ntBASIC-0.19□□□□□ -2.44
USHBP1Q8N6Y0 RNU6-980P-201ENST00000516925 103 ntBASIC-0.19□□□□□ -2.44
USHBP1Q8N6Y0 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.2□□□□□ -2.44
USHBP1Q8N6Y0 MIR3170-201ENST00000582699 77 ntBASIC-0.2□□□□□ -2.44
USHBP1Q8N6Y0 MIR224-201ENST00000384889 81 ntBASIC-0.21□□□□□ -2.44
USHBP1Q8N6Y0 SNORD75.1-201ENST00000408373 60 ntBASIC-0.21□□□□□ -2.44
USHBP1Q8N6Y0 MIR3179-1-201ENST00000578940 84 ntBASIC-0.21□□□□□ -2.44
USHBP1Q8N6Y0 MIR3179-2-201ENST00000579107 84 ntBASIC-0.21□□□□□ -2.44
USHBP1Q8N6Y0 MIR3179-3-201ENST00000579566 84 ntBASIC-0.21□□□□□ -2.44
USHBP1Q8N6Y0 MIR3179-4-201ENST00000617599 84 ntBASIC-0.21□□□□□ -2.44
USHBP1Q8N6Y0 SNORD115-33-201ENST00000363723 82 ntBASIC-0.22□□□□□ -2.44
USHBP1Q8N6Y0 RNU6-1111P-201ENST00000391118 107 ntBASIC-0.22□□□□□ -2.44
USHBP1Q8N6Y0 SNORA26.4-201ENST00000391188 123 ntBASIC-0.22□□□□□ -2.44
USHBP1Q8N6Y0 RPS29P8-201ENST00000445109 171 ntBASIC-0.22□□□□□ -2.44
USHBP1Q8N6Y0 RNA5SP451-201ENST00000410588 110 ntBASIC-0.23□□□□□ -2.45
USHBP1Q8N6Y0 RNU4-63P-201ENST00000411313 118 ntBASIC-0.23□□□□□ -2.45
USHBP1Q8N6Y0 RNU6-247P-201ENST00000362636 107 ntBASIC-0.24□□□□□ -2.45
USHBP1Q8N6Y0 SNORD114-11-201ENST00000363738 75 ntBASIC-0.24□□□□□ -2.45
USHBP1Q8N6Y0 RNA5SP275-201ENST00000363936 118 ntBASIC-0.24□□□□□ -2.45
USHBP1Q8N6Y0 RNU6-320P-201ENST00000516511 106 ntBASIC-0.24□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 254.7 ms